Wall clock time and date at job start Wed Apr 1 2020 03:57:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53008 * 109.46907 * 2 1 4 4 C 1.53006 * 109.47279 * 119.99784 * 2 1 3 5 5 C 1.52991 * 109.47286 * 175.00469 * 4 2 1 6 6 H 1.08997 * 109.47557 * 54.99618 * 5 4 2 7 7 C 1.50703 * 109.47337 * 175.00266 * 5 4 2 8 8 O 1.21280 * 119.99710 * 359.97438 * 7 5 4 9 9 N 1.34774 * 120.00285 * 180.02562 * 7 5 4 10 10 C 1.46505 * 120.00010 * 179.97438 * 9 7 5 11 11 H 1.09003 * 110.55356 * 36.97250 * 10 9 7 12 12 C 1.54854 * 110.62449 * 160.03927 * 10 9 7 13 13 C 1.55846 * 103.44122 * 118.48970 * 12 10 9 14 14 H 1.09002 * 116.12636 * 159.14346 * 13 12 10 15 15 C 1.55841 * 105.06533 * 288.17452 * 13 12 10 16 16 C 1.54854 * 103.44572 * 71.82876 * 15 13 12 17 17 C 1.55836 * 110.62633 * 274.06989 * 10 9 7 18 18 H 1.09000 * 115.56830 * 82.70001 * 17 10 9 19 19 N 1.50240 * 101.04998 * 32.94228 * 13 12 10 20 20 C 1.36937 * 130.84178 * 126.05252 * 19 13 12 21 21 H 1.08002 * 120.00247 * 179.97438 * 20 19 13 22 22 C 1.38805 * 120.00026 * 359.96927 * 20 19 13 23 23 N 1.31625 * 120.00248 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 120.00165 * 180.02562 * 22 20 19 25 25 H 1.48496 * 109.47510 * 89.99892 * 24 22 20 26 26 H 1.48509 * 109.47179 * 210.00093 * 24 22 20 27 27 H 1.48501 * 109.47075 * 329.99321 * 24 22 20 28 28 N 1.46498 * 109.47026 * 294.99880 * 5 4 2 29 29 C 1.36886 * 126.39915 * 119.71565 * 28 5 4 30 30 C 1.34673 * 106.81578 * 179.83971 * 29 28 5 31 31 N 1.34123 * 108.02199 * 0.42509 * 30 29 28 32 32 C 1.30503 * 109.25874 * 359.72864 * 31 30 29 33 33 H 1.08995 * 109.47278 * 300.00257 * 1 2 3 34 34 H 1.09004 * 109.47053 * 60.00441 * 1 2 3 35 35 H 1.08996 * 109.46811 * 180.02562 * 1 2 3 36 36 H 1.08995 * 109.47278 * 239.99743 * 2 1 3 37 37 H 1.08995 * 109.47362 * 59.99794 * 3 2 1 38 38 H 1.08999 * 109.46911 * 179.97438 * 3 2 1 39 39 H 1.08996 * 109.47051 * 299.99371 * 3 2 1 40 40 H 1.08993 * 109.46967 * 55.00022 * 4 2 1 41 41 H 1.09006 * 109.46803 * 295.00124 * 4 2 1 42 42 H 0.97002 * 119.99877 * 359.97438 * 9 7 5 43 43 H 1.08998 * 110.62767 * 236.98141 * 12 10 9 44 44 H 1.09000 * 110.62767 * 0.02562 * 12 10 9 45 45 H 1.09009 * 110.62275 * 190.31225 * 15 13 12 46 46 H 1.08997 * 110.62706 * 313.17379 * 15 13 12 47 47 H 1.09003 * 110.62259 * 241.51067 * 16 15 13 48 48 H 1.08996 * 110.62979 * 118.48846 * 16 15 13 49 49 H 0.96995 * 120.00362 * 179.97438 * 23 22 20 50 50 H 1.07991 * 126.58871 * 359.97438 * 29 28 5 51 51 H 1.07996 * 125.98663 * 180.11664 * 30 29 28 52 52 H 1.07993 * 125.65210 * 179.97438 * 32 31 30 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5648 -0.8309 1.1881 6 1 3.9953 0.1612 1.0528 7 6 4.0773 -1.4301 2.4724 8 8 3.2996 -1.7386 3.3503 9 7 5.4000 -1.6223 2.6457 10 6 5.8982 -2.2043 3.8944 11 1 5.2145 -2.9710 4.2588 12 6 7.3197 -2.7857 3.6962 13 6 8.1931 -1.9507 4.6805 14 1 9.1424 -2.3971 4.9768 15 6 8.2878 -0.5347 4.0366 16 6 6.8663 0.0467 4.2348 17 6 6.1063 -1.0974 4.9714 18 1 5.2129 -0.8031 5.5222 19 7 7.2134 -1.6974 5.7909 20 6 7.3022 -1.9386 7.1359 21 1 6.4787 -1.6825 7.7861 22 6 8.4506 -2.5125 7.6638 23 7 9.4540 -2.8252 6.8714 24 14 8.5715 -2.8422 9.4984 25 1 8.0557 -4.2034 9.7919 26 1 9.9906 -2.7478 9.9259 27 1 7.7646 -1.8373 10.2362 28 7 3.9480 -1.6871 0.0628 29 6 4.7194 -1.3241 -1.0082 30 6 4.8253 -2.4098 -1.7979 31 7 4.1295 -3.4057 -1.2296 32 6 3.6012 -2.9802 -0.1147 33 1 -0.3633 0.5138 0.8899 34 1 -0.3633 0.5138 -0.8901 35 1 -0.3633 -1.0276 0.0005 36 1 1.8933 -0.5138 -0.8899 37 1 1.6766 1.9564 0.8899 38 1 3.1299 1.4426 0.0005 39 1 1.6767 1.9563 -0.8900 40 1 1.6054 -1.7197 1.2952 41 1 1.7516 -0.1582 2.1370 42 1 6.0220 -1.3752 1.9436 43 1 7.3432 -3.8421 3.9635 44 1 7.6541 -2.6406 2.6690 45 1 9.0276 0.0745 4.5560 46 1 8.5301 -0.6103 2.9766 47 1 6.4008 0.2593 3.2724 48 1 6.9011 0.9442 4.8523 49 1 10.2567 -3.2258 7.2403 50 1 5.1604 -0.3542 -1.1846 51 1 5.3703 -2.4669 -2.7285 52 1 2.9880 -3.5650 0.5548 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001109431646.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:57:15 Heat of formation + Delta-G solvation = 52.312273 kcal Electronic energy + Delta-G solvation = -32120.324051 eV Core-core repulsion = 28121.464363 eV Total energy + Delta-G solvation = -3998.859688 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -43.18379 -41.51802 -40.06635 -37.74796 -35.60666 -34.68036 -34.10074 -31.06395 -30.94535 -30.66248 -29.86664 -29.18233 -28.03026 -26.40843 -25.49543 -23.12498 -22.68942 -22.19958 -21.75788 -21.18012 -20.66528 -20.20619 -19.14160 -18.70009 -17.67198 -17.23643 -16.86823 -16.58376 -16.32855 -15.87783 -15.65892 -15.39979 -15.17724 -14.91354 -14.78459 -14.71067 -14.24121 -14.13320 -13.92578 -13.64820 -13.48747 -13.28813 -13.19796 -13.04426 -12.91241 -12.80057 -12.69710 -12.62727 -12.43670 -12.01992 -11.92723 -11.84928 -11.71402 -11.60181 -11.56646 -11.41049 -11.16140 -11.05443 -10.89055 -10.82638 -10.44441 -10.08013 -9.38365 -8.89189 -7.81828 -5.21440 1.05879 1.16158 1.45137 1.46385 1.54276 1.98111 2.06555 2.28642 2.47922 3.31154 3.36318 3.47516 3.52974 3.79189 3.86181 3.89025 3.94387 4.04160 4.05254 4.10755 4.13210 4.31695 4.37913 4.42389 4.55491 4.64011 4.67233 4.69070 4.73162 4.74699 4.81089 4.84775 4.92767 4.96963 5.02960 5.03364 5.05486 5.10287 5.15587 5.27412 5.29364 5.34262 5.42121 5.43216 5.47690 5.50438 5.68811 5.85988 5.89232 6.17237 6.24470 6.44101 7.02404 7.09859 7.18124 7.67024 8.52176 9.24996 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.016860 B = 0.002852 C = 0.002677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1660.349175 B = 9814.550960 C =10455.873638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.088 4.088 3 C -0.150 4.150 4 C -0.106 4.106 5 C 0.132 3.868 6 H 0.157 0.843 7 C 0.501 3.499 8 O -0.563 6.563 9 N -0.688 5.688 10 C 0.148 3.852 11 H 0.052 0.948 12 C -0.125 4.125 13 C 0.138 3.862 14 H 0.119 0.881 15 C -0.126 4.126 16 C -0.114 4.114 17 C 0.122 3.878 18 H 0.070 0.930 19 N -0.618 5.618 20 C -0.225 4.225 21 H 0.073 0.927 22 C -0.063 4.063 23 N -0.944 5.944 24 Si 0.975 3.025 25 H -0.290 1.290 26 H -0.292 1.292 27 H -0.274 1.274 28 N -0.441 5.441 29 C -0.036 4.036 30 C -0.052 4.052 31 N -0.526 5.526 32 C 0.174 3.826 33 H 0.058 0.942 34 H 0.064 0.936 35 H 0.048 0.952 36 H 0.065 0.935 37 H 0.058 0.942 38 H 0.064 0.936 39 H 0.064 0.936 40 H 0.064 0.936 41 H 0.088 0.912 42 H 0.411 0.589 43 H 0.042 0.958 44 H 0.090 0.910 45 H 0.036 0.964 46 H 0.085 0.915 47 H 0.088 0.912 48 H 0.045 0.955 49 H 0.249 0.751 50 H 0.213 0.787 51 H 0.183 0.817 52 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.649 10.087 -19.942 25.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.107 4.107 3 C -0.208 4.208 4 C -0.145 4.145 5 C 0.025 3.975 6 H 0.174 0.826 7 C 0.286 3.714 8 O -0.440 6.440 9 N -0.340 5.340 10 C 0.040 3.960 11 H 0.070 0.930 12 C -0.165 4.165 13 C 0.032 3.968 14 H 0.136 0.864 15 C -0.165 4.165 16 C -0.153 4.153 17 C 0.014 3.986 18 H 0.089 0.911 19 N -0.340 5.340 20 C -0.354 4.354 21 H 0.090 0.910 22 C -0.256 4.256 23 N -0.593 5.593 24 Si 0.804 3.196 25 H -0.218 1.218 26 H -0.218 1.218 27 H -0.200 1.200 28 N -0.126 5.126 29 C -0.168 4.168 30 C -0.199 4.199 31 N -0.245 5.245 32 C -0.108 4.108 33 H 0.077 0.923 34 H 0.083 0.917 35 H 0.067 0.933 36 H 0.083 0.917 37 H 0.077 0.923 38 H 0.083 0.917 39 H 0.083 0.917 40 H 0.082 0.918 41 H 0.106 0.894 42 H 0.248 0.752 43 H 0.061 0.939 44 H 0.108 0.892 45 H 0.055 0.945 46 H 0.103 0.897 47 H 0.107 0.893 48 H 0.064 0.936 49 H 0.059 0.941 50 H 0.230 0.770 51 H 0.201 0.799 52 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -12.168 9.065 -19.223 24.490 hybrid contribution 0.507 0.103 1.565 1.649 sum -11.661 9.168 -17.657 23.061 Atomic orbital electron populations 1.21803 0.94531 1.01666 1.02361 1.21041 0.96389 0.96852 0.96410 1.21931 1.01460 0.94748 1.02615 1.21810 0.90065 1.02384 1.00211 1.21747 0.98775 0.95955 0.80986 0.82553 1.21041 0.82510 0.78698 0.89172 1.90756 1.56659 1.51167 1.45407 1.46010 1.07186 1.62339 1.18429 1.22116 0.94653 0.95271 0.83911 0.92980 1.23090 0.94258 0.98962 1.00174 1.23673 0.95174 0.93471 0.84481 0.86361 1.22937 0.96095 0.97575 0.99881 1.22799 0.95854 0.96775 0.99871 1.23318 0.91198 0.93529 0.90594 0.91146 1.46736 1.14382 1.70534 1.02308 1.19297 1.00202 1.33169 0.82713 0.90961 1.25409 0.96273 1.02129 1.01740 1.69666 1.06391 1.49196 1.34088 0.85124 0.76533 0.77731 0.80221 1.21760 1.21787 1.19964 1.45457 1.38733 1.10660 1.17727 1.23309 1.01292 1.02912 0.89248 1.22699 1.04622 0.89686 1.02881 1.70300 1.13828 1.32220 1.08125 1.24895 1.04070 0.84137 0.97704 0.92323 0.91743 0.93333 0.91668 0.92260 0.91702 0.91742 0.91759 0.89360 0.75187 0.93922 0.89200 0.94538 0.89685 0.89347 0.93600 0.94144 0.76995 0.79944 0.78914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.78 9.19 71.98 0.66 -1.11 16 2 C -0.09 -1.06 2.86 -10.79 -0.03 -1.09 16 3 C -0.15 -1.32 8.96 71.98 0.64 -0.68 16 4 C -0.11 -1.67 3.49 30.59 0.11 -1.56 16 5 C 0.13 2.01 2.64 44.24 0.12 2.13 16 6 H 0.16 1.42 6.28 -2.39 -0.02 1.41 16 7 C 0.50 12.22 7.05 87.66 0.62 12.83 16 8 O -0.56 -18.74 15.65 -3.03 -0.05 -18.79 16 9 N -0.69 -17.00 3.63 -434.91 -1.58 -18.58 16 10 C 0.15 5.17 3.08 46.60 0.14 5.32 16 11 H 0.05 2.17 7.70 -2.39 -0.02 2.15 16 12 C -0.13 -4.58 6.20 32.21 0.20 -4.38 16 13 C 0.14 6.08 4.72 46.23 0.22 6.30 16 14 H 0.12 6.19 5.52 -2.39 -0.01 6.17 16 15 C -0.13 -4.40 6.44 32.21 0.21 -4.19 16 16 C -0.11 -3.68 6.33 32.21 0.20 -3.47 16 17 C 0.12 4.84 5.35 46.23 0.25 5.09 16 18 H 0.07 2.99 8.14 -2.39 -0.02 2.97 16 19 N -0.62 -30.65 2.99 -615.24 -1.84 -32.49 16 20 C -0.22 -12.57 10.59 84.03 0.89 -11.68 16 21 H 0.07 3.99 7.83 -2.91 -0.02 3.97 16 22 C -0.06 -3.51 5.50 84.86 0.47 -3.05 16 23 N -0.94 -54.61 10.47 21.65 0.23 -54.38 16 24 Si 0.97 45.91 29.55 68.60 2.03 47.94 16 25 H -0.29 -13.62 7.11 99.48 0.71 -12.92 16 26 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 27 H -0.27 -12.44 7.11 99.48 0.71 -11.74 16 28 N -0.44 -7.03 1.98 -510.48 -1.01 -8.04 16 29 C -0.04 -0.46 11.54 83.09 0.96 0.50 16 30 C -0.05 -0.95 11.87 83.53 0.99 0.04 16 31 N -0.53 -13.01 11.25 -200.31 -2.25 -15.26 16 32 C 0.17 3.82 11.59 180.26 2.09 5.91 16 33 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 34 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 35 H 0.05 0.65 8.14 -2.39 -0.02 0.64 16 36 H 0.06 0.91 7.62 -2.39 -0.02 0.89 16 37 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 38 H 0.06 0.42 6.46 -2.39 -0.02 0.40 16 39 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 40 H 0.06 1.22 7.80 -2.39 -0.02 1.20 16 41 H 0.09 1.52 7.96 -2.38 -0.02 1.50 16 42 H 0.41 7.87 8.02 -92.71 -0.74 7.13 16 43 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 44 H 0.09 2.61 7.34 -2.39 -0.02 2.59 16 45 H 0.04 1.41 8.14 -2.38 -0.02 1.39 16 46 H 0.08 2.30 7.82 -2.39 -0.02 2.28 16 47 H 0.09 2.13 6.48 -2.39 -0.02 2.11 16 48 H 0.05 1.55 8.14 -2.39 -0.02 1.54 16 49 H 0.25 14.04 8.31 -92.71 -0.77 13.27 16 50 H 0.21 0.99 8.06 -2.92 -0.02 0.96 16 51 H 0.18 2.53 8.06 -2.91 -0.02 2.50 16 52 H 0.19 4.18 8.06 -2.91 -0.02 4.15 16 Total: -1.00 -71.45 406.81 4.43 -67.02 By element: Atomic # 1 Polarization: 25.52 SS G_CDS: 0.17 Total: 25.69 kcal Atomic # 6 Polarization: -1.84 SS G_CDS: 8.73 Total: 6.89 kcal Atomic # 7 Polarization: -122.29 SS G_CDS: -6.45 Total: -128.75 kcal Atomic # 8 Polarization: -18.74 SS G_CDS: -0.05 Total: -18.79 kcal Atomic # 14 Polarization: 45.91 SS G_CDS: 2.03 Total: 47.94 kcal Total: -71.45 4.43 -67.02 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001109431646.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.333 kcal (2) G-P(sol) polarization free energy of solvation -71.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.020 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds