Wall clock time and date at job start Wed Apr 1 2020 03:57:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52988 * 109.47601 * 2 1 4 4 C 1.53000 * 109.46927 * 120.00576 * 2 1 3 5 5 C 1.53005 * 109.47399 * 65.91769 * 4 2 1 6 6 H 1.08996 * 109.46849 * 305.22809 * 5 4 2 7 7 C 1.50702 * 109.46934 * 185.22640 * 5 4 2 8 8 O 1.21279 * 120.00138 * 0.02562 * 7 5 4 9 9 N 1.34774 * 119.99672 * 179.97438 * 7 5 4 10 10 C 1.46502 * 119.99872 * 179.97438 * 9 7 5 11 11 H 1.08999 * 110.55448 * 36.45352 * 10 9 7 12 12 C 1.54847 * 110.62905 * 273.55021 * 10 9 7 13 13 C 1.55843 * 103.44951 * 241.50989 * 12 10 9 14 14 H 1.08998 * 115.56332 * 158.81445 * 13 12 10 15 15 C 1.55846 * 105.06196 * 287.42655 * 13 12 10 16 16 C 1.56678 * 102.60058 * 72.29892 * 15 13 12 17 17 C 1.55839 * 110.62609 * 159.52377 * 10 9 7 18 18 H 1.09005 * 115.56040 * 319.67909 * 17 10 9 19 19 N 1.50235 * 101.05275 * 85.55397 * 17 10 9 20 20 C 1.36941 * 130.84199 * 233.99236 * 19 17 10 21 21 H 1.07990 * 119.99874 * 359.97438 * 20 19 17 22 22 C 1.38810 * 120.00043 * 179.97438 * 20 19 17 23 23 N 1.31626 * 119.99948 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 120.00037 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.47180 * 0.02562 * 24 22 20 26 26 H 1.48504 * 109.47302 * 119.99959 * 24 22 20 27 27 H 1.48505 * 109.47250 * 239.99749 * 24 22 20 28 28 N 1.46500 * 109.47011 * 65.22707 * 5 4 2 29 29 C 1.36872 * 126.39720 * 235.17898 * 28 5 4 30 30 C 1.34671 * 106.81865 * 180.02562 * 29 28 5 31 31 N 1.34121 * 108.01752 * 359.97438 * 30 29 28 32 32 C 1.30494 * 109.25922 * 0.02562 * 31 30 29 33 33 H 1.09004 * 109.47280 * 299.99994 * 1 2 3 34 34 H 1.09009 * 109.46949 * 59.99695 * 1 2 3 35 35 H 1.08999 * 109.47736 * 179.97438 * 1 2 3 36 36 H 1.09007 * 109.46783 * 239.99967 * 2 1 3 37 37 H 1.09006 * 109.47257 * 55.04441 * 3 2 1 38 38 H 1.08997 * 109.47527 * 175.04384 * 3 2 1 39 39 H 1.09002 * 109.47841 * 295.04723 * 3 2 1 40 40 H 1.08998 * 109.46824 * 305.91638 * 4 2 1 41 41 H 1.08998 * 109.47123 * 185.92230 * 4 2 1 42 42 H 0.96994 * 120.00005 * 0.02562 * 9 7 5 43 43 H 1.09000 * 110.62669 * 0.02562 * 12 10 9 44 44 H 1.09007 * 110.62356 * 123.01674 * 12 10 9 45 45 H 1.09004 * 110.62666 * 190.31187 * 15 13 12 46 46 H 1.09001 * 110.62565 * 313.32764 * 15 13 12 47 47 H 1.09004 * 110.35485 * 241.21635 * 16 15 13 48 48 H 1.08998 * 110.88612 * 118.36369 * 16 15 13 49 49 H 0.97005 * 119.99497 * 179.97438 * 23 22 20 50 50 H 1.08003 * 126.59016 * 0.02562 * 29 28 5 51 51 H 1.07997 * 125.99162 * 180.02562 * 30 29 28 52 52 H 1.08006 * 125.65143 * 180.02562 * 32 31 30 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4423 0.0000 4 6 2.0399 -0.7214 1.2492 5 6 1.6550 -2.2005 1.1769 6 1 0.5787 -2.2889 1.0290 7 6 2.0433 -2.8839 2.4627 8 8 2.5751 -2.2504 3.3497 9 7 1.7987 -4.1990 2.6273 10 6 2.1766 -4.8636 3.8770 11 1 2.0257 -4.1968 4.7259 12 6 3.6472 -5.3447 3.8159 13 6 3.5296 -6.8908 3.9722 14 1 4.3802 -7.4665 3.6074 15 6 3.1546 -7.1193 5.4675 16 6 1.6648 -6.6373 5.5238 17 6 1.3706 -6.1845 4.0619 18 1 0.3198 -6.1382 3.7760 19 7 2.2191 -7.1508 3.2849 20 6 1.8972 -8.0050 2.2642 21 1 0.8821 -8.0514 1.8987 22 6 2.8758 -8.8114 1.6993 23 7 4.1132 -8.7544 2.1445 24 14 2.4366 -9.9772 0.3075 25 1 0.9906 -9.8511 -0.0062 26 1 3.2355 -9.6340 -0.8964 27 1 2.7348 -11.3728 0.7180 28 7 2.3555 -2.8332 0.0566 29 6 1.7801 -3.5267 -0.9736 30 6 2.7817 -3.9348 -1.7760 31 7 3.9371 -3.5018 -1.2503 32 6 3.6896 -2.8413 -0.1524 33 1 -0.3634 0.5138 0.8900 34 1 -0.3633 0.5139 -0.8900 35 1 -0.3634 -1.0276 -0.0005 36 1 1.8933 -0.5139 -0.8901 37 1 1.6061 1.9812 0.8423 38 1 3.1264 1.4436 0.0888 39 1 1.7511 1.9301 -0.9310 40 1 1.5927 -0.2724 2.1360 41 1 3.1247 -0.6305 1.3038 42 1 1.3730 -4.7056 1.9181 43 1 4.0955 -5.0885 2.8559 44 1 4.2250 -4.9186 4.6362 45 1 3.2259 -8.1763 5.7241 46 1 3.7918 -6.5212 6.1189 47 1 1.5633 -5.7990 6.2131 48 1 1.0030 -7.4534 5.8135 49 1 4.7969 -9.3182 1.7500 50 1 0.7254 -3.7112 -1.1156 51 1 2.6734 -4.5093 -2.6841 52 1 4.4293 -2.3774 0.4834 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001110697083.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:57:26 Heat of formation + Delta-G solvation = 63.442268 kcal Electronic energy + Delta-G solvation = -32561.674833 eV Core-core repulsion = 28563.297778 eV Total energy + Delta-G solvation = -3998.377055 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.79 seconds Orbital eigenvalues (eV) -42.10831 -39.91933 -38.66018 -36.89158 -34.08489 -33.51130 -32.50451 -29.83357 -29.13852 -29.00621 -28.70275 -27.84051 -27.46310 -24.87601 -24.15297 -21.99010 -21.23657 -21.13808 -20.13535 -19.91019 -19.64113 -18.76729 -17.69691 -17.06444 -16.68572 -16.20849 -15.50272 -14.92747 -14.81880 -14.53772 -14.36058 -14.04449 -13.93749 -13.83230 -13.69837 -13.58497 -13.27767 -12.92888 -12.78974 -12.49075 -12.37787 -12.08379 -11.96144 -11.88280 -11.31043 -11.17612 -11.14572 -11.01658 -10.95733 -10.92023 -10.88647 -10.59183 -10.47200 -10.23739 -10.09014 -9.92035 -9.78735 -9.51096 -9.27044 -9.12719 -8.99345 -8.60988 -8.33728 -6.97914 -5.76198 -3.15976 2.11765 2.30051 3.14856 3.28681 3.36616 3.40262 3.41040 3.44743 4.30262 4.38970 4.47049 4.58422 4.74892 4.81845 4.89537 4.95500 5.00715 5.06585 5.32530 5.35119 5.39647 5.46422 5.55373 5.57266 5.58532 5.61680 5.65090 5.69826 5.81912 5.83464 5.90251 5.98323 5.99573 6.01761 6.08362 6.10986 6.21897 6.34310 6.35516 6.42087 6.52470 6.66200 6.76871 6.87419 6.88525 7.00265 7.25060 7.27779 7.43322 7.74524 7.77077 8.14343 8.25874 8.32728 9.04516 9.68702 10.48016 11.32658 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.011345 B = 0.004054 C = 0.003318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2467.543399 B = 6905.806905 C = 8437.585161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.099 4.099 3 C -0.144 4.144 4 C -0.107 4.107 5 C 0.118 3.882 6 H 0.119 0.881 7 C 0.500 3.500 8 O -0.537 6.537 9 N -0.691 5.691 10 C 0.127 3.873 11 H 0.079 0.921 12 C -0.140 4.140 13 C 0.154 3.846 14 H 0.152 0.848 15 C -0.139 4.139 16 C -0.127 4.127 17 C 0.125 3.875 18 H 0.087 0.913 19 N -0.588 5.588 20 C -0.218 4.218 21 H 0.077 0.923 22 C -0.006 4.006 23 N -0.916 5.916 24 Si 0.914 3.086 25 H -0.281 1.281 26 H -0.289 1.289 27 H -0.291 1.291 28 N -0.447 5.447 29 C -0.057 4.057 30 C -0.022 4.022 31 N -0.489 5.489 32 C 0.195 3.805 33 H 0.057 0.943 34 H 0.056 0.944 35 H 0.052 0.948 36 H 0.073 0.927 37 H 0.055 0.945 38 H 0.056 0.944 39 H 0.054 0.946 40 H 0.091 0.909 41 H 0.079 0.921 42 H 0.403 0.597 43 H 0.058 0.942 44 H 0.053 0.947 45 H 0.056 0.944 46 H 0.050 0.950 47 H 0.050 0.950 48 H 0.058 0.942 49 H 0.254 0.746 50 H 0.172 0.828 51 H 0.167 0.833 52 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.527 15.889 -1.620 17.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.117 4.117 3 C -0.202 4.202 4 C -0.145 4.145 5 C 0.011 3.989 6 H 0.137 0.863 7 C 0.282 3.718 8 O -0.413 6.413 9 N -0.340 5.340 10 C 0.021 3.979 11 H 0.096 0.904 12 C -0.181 4.181 13 C 0.047 3.953 14 H 0.169 0.831 15 C -0.179 4.179 16 C -0.167 4.167 17 C 0.017 3.983 18 H 0.105 0.895 19 N -0.309 5.309 20 C -0.346 4.346 21 H 0.095 0.905 22 C -0.202 4.202 23 N -0.563 5.563 24 Si 0.744 3.256 25 H -0.206 1.206 26 H -0.216 1.216 27 H -0.218 1.218 28 N -0.132 5.132 29 C -0.189 4.189 30 C -0.169 4.169 31 N -0.207 5.207 32 C -0.088 4.088 33 H 0.076 0.924 34 H 0.075 0.925 35 H 0.071 0.929 36 H 0.092 0.908 37 H 0.075 0.925 38 H 0.075 0.925 39 H 0.073 0.927 40 H 0.109 0.891 41 H 0.098 0.902 42 H 0.238 0.762 43 H 0.077 0.923 44 H 0.071 0.929 45 H 0.074 0.926 46 H 0.069 0.931 47 H 0.069 0.931 48 H 0.076 0.924 49 H 0.065 0.935 50 H 0.189 0.811 51 H 0.184 0.816 52 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -6.383 15.992 -1.431 17.278 hybrid contribution -1.290 -0.846 -0.639 1.670 sum -7.672 15.146 -2.070 17.104 Atomic orbital electron populations 1.21913 0.95132 1.01608 1.02042 1.21134 0.95924 0.96583 0.98074 1.21791 1.01221 0.95430 1.01727 1.21805 1.03018 0.90379 0.99289 1.21728 0.99133 0.94326 0.83756 0.86281 1.20434 0.79869 0.83025 0.88426 1.90706 1.42598 1.64884 1.43161 1.46044 1.60028 1.08278 1.19614 1.22735 0.96960 0.93800 0.84400 0.90350 1.23438 0.94175 1.00033 1.00432 1.23712 0.92439 0.91105 0.88029 0.83101 1.23371 0.94738 0.99886 0.99862 1.23163 0.97776 0.99346 0.96373 1.23135 0.94327 0.88727 0.92146 0.89530 1.46502 1.04188 1.42778 1.37407 1.18978 0.94524 1.13483 1.07585 0.90502 1.24687 0.95432 1.00106 0.99955 1.69467 1.00857 1.42244 1.43746 0.86019 0.77362 0.80487 0.81684 1.20643 1.21639 1.21815 1.45379 1.07804 1.41104 1.18955 1.22665 1.00173 1.04056 0.91973 1.22241 0.88012 1.04761 1.01918 1.70315 1.28290 1.13497 1.08564 1.24829 0.83537 1.02866 0.97520 0.92395 0.92484 0.92853 0.90818 0.92550 0.92490 0.92651 0.89054 0.90242 0.76244 0.92315 0.92853 0.92557 0.93119 0.93104 0.92360 0.93531 0.81096 0.81597 0.78685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 8.97 37.16 0.33 -0.77 16 2 C -0.10 -0.84 2.86 -90.63 -0.26 -1.10 16 3 C -0.14 -1.12 9.19 37.15 0.34 -0.78 16 4 C -0.11 -1.07 3.43 -26.73 -0.09 -1.16 16 5 C 0.12 1.33 2.65 -69.08 -0.18 1.14 16 6 H 0.12 1.10 6.32 -51.93 -0.33 0.77 16 7 C 0.50 7.48 7.16 -10.99 -0.08 7.40 16 8 O -0.54 -9.43 15.63 5.56 0.09 -9.35 16 9 N -0.69 -11.22 5.10 -51.40 -0.26 -11.48 16 10 C 0.13 2.28 2.73 -65.44 -0.18 2.10 16 11 H 0.08 1.39 7.36 -51.93 -0.38 1.01 16 12 C -0.14 -2.85 6.22 -24.24 -0.15 -3.00 16 13 C 0.15 3.48 4.67 -62.80 -0.29 3.19 16 14 H 0.15 3.98 5.52 -51.93 -0.29 3.69 16 15 C -0.14 -2.71 6.58 -23.23 -0.15 -2.87 16 16 C -0.13 -2.23 6.49 -23.23 -0.15 -2.38 16 17 C 0.13 2.36 5.04 -62.81 -0.32 2.04 16 18 H 0.09 1.52 8.14 -51.93 -0.42 1.10 16 19 N -0.59 -13.70 2.99 -145.82 -0.44 -14.13 16 20 C -0.22 -5.65 10.59 -15.06 -0.16 -5.81 16 21 H 0.08 1.93 7.83 -52.49 -0.41 1.52 16 22 C -0.01 -0.15 5.50 -17.43 -0.10 -0.24 16 23 N -0.92 -25.86 10.47 55.49 0.58 -25.28 16 24 Si 0.91 21.61 29.55 -169.99 -5.02 16.59 16 25 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 26 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 27 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 28 N -0.45 -5.68 1.97 -112.70 -0.22 -5.90 16 29 C -0.06 -0.72 11.55 -16.56 -0.19 -0.91 16 30 C -0.02 -0.32 11.87 -17.81 -0.21 -0.53 16 31 N -0.49 -8.36 11.25 -14.67 -0.17 -8.53 16 32 C 0.19 2.93 11.57 -90.38 -1.05 1.88 16 33 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.06 0.39 8.14 -51.92 -0.42 -0.03 16 35 H 0.05 0.38 6.49 -51.93 -0.34 0.04 16 36 H 0.07 0.74 7.61 -51.92 -0.39 0.35 16 37 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 38 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 39 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 40 H 0.09 0.92 7.95 -51.93 -0.41 0.51 16 41 H 0.08 0.88 7.57 -51.93 -0.39 0.48 16 42 H 0.40 6.62 8.62 -40.82 -0.35 6.27 16 43 H 0.06 1.33 7.98 -51.93 -0.41 0.92 16 44 H 0.05 1.02 7.80 -51.92 -0.40 0.61 16 45 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 46 H 0.05 0.88 7.80 -51.93 -0.41 0.48 16 47 H 0.05 0.78 7.82 -51.93 -0.41 0.38 16 48 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 49 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 50 H 0.17 1.62 8.06 -52.48 -0.42 1.19 16 51 H 0.17 2.16 8.06 -52.49 -0.42 1.74 16 52 H 0.20 2.67 7.90 -52.48 -0.41 2.26 16 LS Contribution 409.48 15.07 6.17 6.17 Total: -1.00 -30.77 409.48 -10.86 -41.63 By element: Atomic # 1 Polarization: 20.79 SS G_CDS: -8.71 Total: 12.08 kcal Atomic # 6 Polarization: 1.08 SS G_CDS: -2.88 Total: -1.80 kcal Atomic # 7 Polarization: -64.81 SS G_CDS: -0.51 Total: -65.32 kcal Atomic # 8 Polarization: -9.43 SS G_CDS: 0.09 Total: -9.35 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -30.77 -10.86 -41.63 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001110697083.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.069 kcal (2) G-P(sol) polarization free energy of solvation -30.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.627 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.79 seconds