Wall clock time and date at job start Wed Apr 1 2020 03:57:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52988 * 109.47601 * 2 1 4 4 C 1.53000 * 109.46927 * 120.00576 * 2 1 3 5 5 C 1.53005 * 109.47399 * 65.91769 * 4 2 1 6 6 H 1.08996 * 109.46849 * 305.22809 * 5 4 2 7 7 C 1.50702 * 109.46934 * 185.22640 * 5 4 2 8 8 O 1.21279 * 120.00138 * 0.02562 * 7 5 4 9 9 N 1.34774 * 119.99672 * 179.97438 * 7 5 4 10 10 C 1.46502 * 119.99872 * 179.97438 * 9 7 5 11 11 H 1.08999 * 110.55448 * 36.45352 * 10 9 7 12 12 C 1.54847 * 110.62905 * 273.55021 * 10 9 7 13 13 C 1.55843 * 103.44951 * 241.50989 * 12 10 9 14 14 H 1.08998 * 115.56332 * 158.81445 * 13 12 10 15 15 C 1.55846 * 105.06196 * 287.42655 * 13 12 10 16 16 C 1.56678 * 102.60058 * 72.29892 * 15 13 12 17 17 C 1.55839 * 110.62609 * 159.52377 * 10 9 7 18 18 H 1.09005 * 115.56040 * 319.67909 * 17 10 9 19 19 N 1.50235 * 101.05275 * 85.55397 * 17 10 9 20 20 C 1.36941 * 130.84199 * 233.99236 * 19 17 10 21 21 H 1.07990 * 119.99874 * 359.97438 * 20 19 17 22 22 C 1.38810 * 120.00043 * 179.97438 * 20 19 17 23 23 N 1.31626 * 119.99948 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 120.00037 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.47180 * 0.02562 * 24 22 20 26 26 H 1.48504 * 109.47302 * 119.99959 * 24 22 20 27 27 H 1.48505 * 109.47250 * 239.99749 * 24 22 20 28 28 N 1.46500 * 109.47011 * 65.22707 * 5 4 2 29 29 C 1.36872 * 126.39720 * 235.17898 * 28 5 4 30 30 C 1.34671 * 106.81865 * 180.02562 * 29 28 5 31 31 N 1.34121 * 108.01752 * 359.97438 * 30 29 28 32 32 C 1.30494 * 109.25922 * 0.02562 * 31 30 29 33 33 H 1.09004 * 109.47280 * 299.99994 * 1 2 3 34 34 H 1.09009 * 109.46949 * 59.99695 * 1 2 3 35 35 H 1.08999 * 109.47736 * 179.97438 * 1 2 3 36 36 H 1.09007 * 109.46783 * 239.99967 * 2 1 3 37 37 H 1.09006 * 109.47257 * 55.04441 * 3 2 1 38 38 H 1.08997 * 109.47527 * 175.04384 * 3 2 1 39 39 H 1.09002 * 109.47841 * 295.04723 * 3 2 1 40 40 H 1.08998 * 109.46824 * 305.91638 * 4 2 1 41 41 H 1.08998 * 109.47123 * 185.92230 * 4 2 1 42 42 H 0.96994 * 120.00005 * 0.02562 * 9 7 5 43 43 H 1.09000 * 110.62669 * 0.02562 * 12 10 9 44 44 H 1.09007 * 110.62356 * 123.01674 * 12 10 9 45 45 H 1.09004 * 110.62666 * 190.31187 * 15 13 12 46 46 H 1.09001 * 110.62565 * 313.32764 * 15 13 12 47 47 H 1.09004 * 110.35485 * 241.21635 * 16 15 13 48 48 H 1.08998 * 110.88612 * 118.36369 * 16 15 13 49 49 H 0.97005 * 119.99497 * 179.97438 * 23 22 20 50 50 H 1.08003 * 126.59016 * 0.02562 * 29 28 5 51 51 H 1.07997 * 125.99162 * 180.02562 * 30 29 28 52 52 H 1.08006 * 125.65143 * 180.02562 * 32 31 30 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4423 0.0000 4 6 2.0399 -0.7214 1.2492 5 6 1.6550 -2.2005 1.1769 6 1 0.5787 -2.2889 1.0290 7 6 2.0433 -2.8839 2.4627 8 8 2.5751 -2.2504 3.3497 9 7 1.7987 -4.1990 2.6273 10 6 2.1766 -4.8636 3.8770 11 1 2.0257 -4.1968 4.7259 12 6 3.6472 -5.3447 3.8159 13 6 3.5296 -6.8908 3.9722 14 1 4.3802 -7.4665 3.6074 15 6 3.1546 -7.1193 5.4675 16 6 1.6648 -6.6373 5.5238 17 6 1.3706 -6.1845 4.0619 18 1 0.3198 -6.1382 3.7760 19 7 2.2191 -7.1508 3.2849 20 6 1.8972 -8.0050 2.2642 21 1 0.8821 -8.0514 1.8987 22 6 2.8758 -8.8114 1.6993 23 7 4.1132 -8.7544 2.1445 24 14 2.4366 -9.9772 0.3075 25 1 0.9906 -9.8511 -0.0062 26 1 3.2355 -9.6340 -0.8964 27 1 2.7348 -11.3728 0.7180 28 7 2.3555 -2.8332 0.0566 29 6 1.7801 -3.5267 -0.9736 30 6 2.7817 -3.9348 -1.7760 31 7 3.9371 -3.5018 -1.2503 32 6 3.6896 -2.8413 -0.1524 33 1 -0.3634 0.5138 0.8900 34 1 -0.3633 0.5139 -0.8900 35 1 -0.3634 -1.0276 -0.0005 36 1 1.8933 -0.5139 -0.8901 37 1 1.6061 1.9812 0.8423 38 1 3.1264 1.4436 0.0888 39 1 1.7511 1.9301 -0.9310 40 1 1.5927 -0.2724 2.1360 41 1 3.1247 -0.6305 1.3038 42 1 1.3730 -4.7056 1.9181 43 1 4.0955 -5.0885 2.8559 44 1 4.2250 -4.9186 4.6362 45 1 3.2259 -8.1763 5.7241 46 1 3.7918 -6.5212 6.1189 47 1 1.5633 -5.7990 6.2131 48 1 1.0030 -7.4534 5.8135 49 1 4.7969 -9.3182 1.7500 50 1 0.7254 -3.7112 -1.1156 51 1 2.6734 -4.5093 -2.6841 52 1 4.4293 -2.3774 0.4834 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001110697083.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:57:23 Heat of formation + Delta-G solvation = 47.648083 kcal Electronic energy + Delta-G solvation = -32562.359720 eV Core-core repulsion = 28563.297778 eV Total energy + Delta-G solvation = -3999.061942 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 3.96 seconds Orbital eigenvalues (eV) -43.19476 -41.30896 -40.06626 -37.75827 -35.44170 -34.67901 -34.26447 -30.98236 -30.89663 -30.41272 -29.90104 -29.27101 -28.03905 -26.24514 -25.66524 -23.28313 -22.39442 -22.24292 -21.56159 -21.19702 -20.70168 -20.33806 -18.86773 -18.83251 -17.77060 -17.45712 -16.80390 -16.46436 -16.10588 -15.88570 -15.48191 -15.32109 -15.08161 -15.02509 -14.83849 -14.80708 -14.41891 -14.23359 -13.77194 -13.68252 -13.60649 -13.22248 -13.04938 -12.93696 -12.91136 -12.79499 -12.69520 -12.65967 -12.12454 -11.98366 -11.90443 -11.85661 -11.75241 -11.69308 -11.57580 -11.45657 -11.09604 -10.96804 -10.93444 -10.87150 -10.38410 -10.03137 -9.42373 -8.87954 -7.76526 -5.16138 1.00202 1.19604 1.46882 1.48078 1.56654 2.03237 2.12630 2.25383 2.49338 3.36726 3.41709 3.45327 3.46661 3.77837 3.81216 3.89488 3.97606 4.02737 4.04837 4.07937 4.26045 4.30447 4.41985 4.44672 4.57521 4.59522 4.65745 4.67378 4.72912 4.76381 4.80448 4.83407 4.87583 4.94968 5.01395 5.04511 5.05795 5.14374 5.15423 5.25502 5.30041 5.36747 5.41422 5.45728 5.49399 5.55050 5.66901 5.83333 5.87751 6.16702 6.26211 6.47406 7.04091 7.07733 7.14374 7.72809 8.57357 9.30663 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.011345 B = 0.004054 C = 0.003318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2467.543399 B = 6905.806905 C = 8437.585161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.091 4.091 3 C -0.144 4.144 4 C -0.101 4.101 5 C 0.127 3.873 6 H 0.153 0.847 7 C 0.501 3.499 8 O -0.561 6.561 9 N -0.694 5.694 10 C 0.140 3.860 11 H 0.092 0.908 12 C -0.129 4.129 13 C 0.138 3.862 14 H 0.109 0.891 15 C -0.132 4.132 16 C -0.117 4.117 17 C 0.128 3.872 18 H 0.107 0.893 19 N -0.608 5.608 20 C -0.209 4.209 21 H 0.087 0.913 22 C -0.066 4.066 23 N -0.947 5.947 24 Si 0.969 3.031 25 H -0.261 1.261 26 H -0.303 1.303 27 H -0.300 1.300 28 N -0.439 5.439 29 C -0.036 4.036 30 C -0.057 4.057 31 N -0.529 5.529 32 C 0.178 3.822 33 H 0.064 0.936 34 H 0.062 0.938 35 H 0.059 0.941 36 H 0.058 0.942 37 H 0.063 0.937 38 H 0.048 0.952 39 H 0.061 0.939 40 H 0.096 0.904 41 H 0.063 0.937 42 H 0.404 0.596 43 H 0.024 0.976 44 H 0.064 0.936 45 H 0.037 0.963 46 H 0.072 0.928 47 H 0.083 0.917 48 H 0.061 0.939 49 H 0.242 0.758 50 H 0.211 0.789 51 H 0.176 0.824 52 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.870 17.549 -1.034 20.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.110 4.110 3 C -0.202 4.202 4 C -0.139 4.139 5 C 0.021 3.979 6 H 0.170 0.830 7 C 0.286 3.714 8 O -0.439 6.439 9 N -0.342 5.342 10 C 0.034 3.966 11 H 0.110 0.890 12 C -0.170 4.170 13 C 0.031 3.969 14 H 0.127 0.873 15 C -0.172 4.172 16 C -0.157 4.157 17 C 0.021 3.979 18 H 0.124 0.876 19 N -0.329 5.329 20 C -0.338 4.338 21 H 0.105 0.895 22 C -0.259 4.259 23 N -0.597 5.597 24 Si 0.799 3.201 25 H -0.185 1.185 26 H -0.231 1.231 27 H -0.227 1.227 28 N -0.124 5.124 29 C -0.169 4.169 30 C -0.203 4.203 31 N -0.248 5.248 32 C -0.105 4.105 33 H 0.083 0.917 34 H 0.081 0.919 35 H 0.078 0.922 36 H 0.076 0.924 37 H 0.083 0.917 38 H 0.067 0.933 39 H 0.080 0.920 40 H 0.114 0.886 41 H 0.082 0.918 42 H 0.238 0.762 43 H 0.043 0.957 44 H 0.083 0.917 45 H 0.056 0.944 46 H 0.090 0.910 47 H 0.102 0.898 48 H 0.079 0.921 49 H 0.052 0.948 50 H 0.227 0.773 51 H 0.193 0.807 52 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -9.769 17.686 -0.830 20.222 hybrid contribution -0.225 -1.308 -0.785 1.542 sum -9.994 16.378 -1.614 19.254 Atomic orbital electron populations 1.21914 0.93668 1.02234 1.02755 1.21052 0.97036 0.96504 0.96365 1.21790 1.00775 0.95132 1.02456 1.21787 1.02213 0.89605 1.00333 1.21823 1.00580 0.94228 0.81299 0.83007 1.20972 0.78777 0.82401 0.89291 1.90697 1.43433 1.65305 1.44476 1.46011 1.60277 1.08790 1.19123 1.22501 0.94663 0.93714 0.85735 0.89016 1.23271 0.96206 0.98565 0.98952 1.23521 0.91398 0.91964 0.90015 0.87349 1.23267 0.96857 0.99319 0.97730 1.23115 0.95865 1.00556 0.96131 1.23373 0.94801 0.87633 0.92073 0.87552 1.46681 1.05460 1.43325 1.37477 1.19335 0.94594 1.12574 1.07311 0.89535 1.25392 0.95622 1.02336 1.02516 1.69742 1.01591 1.43273 1.45100 0.85129 0.77830 0.78269 0.78853 1.18510 1.23120 1.22735 1.45402 1.07087 1.40700 1.19173 1.23204 1.01378 1.01732 0.90540 1.22611 0.88199 1.06225 1.03277 1.70239 1.30072 1.14668 1.09803 1.24867 0.84766 1.03354 0.97491 0.91655 0.91885 0.92231 0.92361 0.91749 0.93308 0.91964 0.88567 0.91778 0.76177 0.95696 0.91745 0.94435 0.90971 0.89807 0.92050 0.94800 0.77268 0.80655 0.78551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.67 8.97 71.98 0.65 -1.02 16 2 C -0.09 -1.35 2.86 -10.80 -0.03 -1.38 16 3 C -0.14 -1.98 9.19 71.98 0.66 -1.32 16 4 C -0.10 -1.83 3.43 30.60 0.11 -1.73 16 5 C 0.13 2.55 2.65 44.25 0.12 2.66 16 6 H 0.15 2.13 6.32 -2.39 -0.02 2.11 16 7 C 0.50 13.97 7.16 87.66 0.63 14.59 16 8 O -0.56 -18.72 15.63 -3.03 -0.05 -18.77 16 9 N -0.69 -21.03 5.10 -434.93 -2.22 -23.25 16 10 C 0.14 4.72 2.73 46.60 0.13 4.84 16 11 H 0.09 2.92 7.36 -2.39 -0.02 2.90 16 12 C -0.13 -5.23 6.22 32.21 0.20 -5.03 16 13 C 0.14 6.31 4.67 46.23 0.22 6.52 16 14 H 0.11 6.01 5.52 -2.39 -0.01 6.00 16 15 C -0.13 -5.02 6.58 32.86 0.22 -4.80 16 16 C -0.12 -3.76 6.49 32.86 0.21 -3.54 16 17 C 0.13 4.48 5.04 46.23 0.23 4.71 16 18 H 0.11 3.32 8.14 -2.38 -0.02 3.30 16 19 N -0.61 -27.92 2.99 -615.25 -1.84 -29.76 16 20 C -0.21 -10.75 10.59 84.03 0.89 -9.86 16 21 H 0.09 4.18 7.83 -2.92 -0.02 4.16 16 22 C -0.07 -3.62 5.50 84.86 0.47 -3.15 16 23 N -0.95 -55.75 10.47 21.65 0.23 -55.52 16 24 Si 0.97 45.08 29.55 68.60 2.03 47.11 16 25 H -0.26 -11.12 7.11 99.48 0.71 -10.41 16 26 H -0.30 -14.64 7.11 99.48 0.71 -13.93 16 27 H -0.30 -14.20 7.11 99.48 0.71 -13.50 16 28 N -0.44 -10.52 1.97 -510.46 -1.01 -11.53 16 29 C -0.04 -0.84 11.55 83.09 0.96 0.12 16 30 C -0.06 -1.66 11.87 83.53 0.99 -0.67 16 31 N -0.53 -18.53 11.25 -200.32 -2.25 -20.79 16 32 C 0.18 5.41 11.57 180.26 2.09 7.49 16 33 H 0.06 0.66 8.14 -2.38 -0.02 0.64 16 34 H 0.06 0.66 8.14 -2.38 -0.02 0.64 16 35 H 0.06 0.59 6.49 -2.39 -0.02 0.58 16 36 H 0.06 1.07 7.61 -2.38 -0.02 1.05 16 37 H 0.06 0.78 8.14 -2.38 -0.02 0.77 16 38 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 39 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 40 H 0.10 1.70 7.95 -2.39 -0.02 1.68 16 41 H 0.06 1.38 7.57 -2.39 -0.02 1.36 16 42 H 0.40 12.27 8.62 -92.71 -0.80 11.47 16 43 H 0.02 1.14 7.98 -2.39 -0.02 1.12 16 44 H 0.06 2.41 7.80 -2.38 -0.02 2.39 16 45 H 0.04 1.53 8.14 -2.38 -0.02 1.51 16 46 H 0.07 2.39 7.80 -2.39 -0.02 2.37 16 47 H 0.08 2.19 7.82 -2.39 -0.02 2.17 16 48 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 49 H 0.24 14.19 8.31 -92.70 -0.77 13.42 16 50 H 0.21 3.07 8.06 -2.91 -0.02 3.04 16 51 H 0.18 4.54 8.06 -2.91 -0.02 4.52 16 52 H 0.20 5.64 7.90 -2.91 -0.02 5.62 16 Total: -1.00 -69.40 409.48 3.72 -65.68 By element: Atomic # 1 Polarization: 38.27 SS G_CDS: 0.11 Total: 38.38 kcal Atomic # 6 Polarization: -0.29 SS G_CDS: 8.72 Total: 8.43 kcal Atomic # 7 Polarization: -133.74 SS G_CDS: -7.09 Total: -140.84 kcal Atomic # 8 Polarization: -18.72 SS G_CDS: -0.05 Total: -18.77 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.11 kcal Total: -69.40 3.72 -65.68 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001110697083.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.326 kcal (2) G-P(sol) polarization free energy of solvation -69.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.678 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.97 seconds