Wall clock time and date at job start Wed Apr 1 2020 03:57:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47522 * 2 1 4 4 C 1.53000 * 109.47049 * 239.99287 * 2 1 3 5 5 C 1.52994 * 109.47489 * 295.00738 * 4 2 1 6 6 H 1.08994 * 109.47364 * 54.99790 * 5 4 2 7 7 C 1.50699 * 109.47540 * 175.00008 * 5 4 2 8 8 O 1.21290 * 119.99479 * 359.97438 * 7 5 4 9 9 N 1.34774 * 120.00772 * 179.97438 * 7 5 4 10 10 C 1.46498 * 120.00518 * 179.97438 * 9 7 5 11 11 H 1.08996 * 110.55586 * 36.44898 * 10 9 7 12 12 C 1.54849 * 110.62745 * 273.54697 * 10 9 7 13 13 C 1.55844 * 103.44513 * 241.50879 * 12 10 9 14 14 H 1.09004 * 115.55356 * 158.80887 * 13 12 10 15 15 C 1.55835 * 105.06405 * 287.42336 * 13 12 10 16 16 C 1.56687 * 102.60085 * 72.30333 * 15 13 12 17 17 C 1.55843 * 103.59434 * 359.66498 * 16 15 13 18 18 H 1.09003 * 116.12417 * 159.38198 * 17 16 15 19 19 N 1.50229 * 101.05406 * 33.16682 * 17 16 15 20 20 C 1.36938 * 130.83594 * 126.05217 * 19 17 16 21 21 H 1.07998 * 120.00134 * 171.55304 * 20 19 17 22 22 C 1.38812 * 120.00142 * 351.55226 * 20 19 17 23 23 N 1.31626 * 120.00067 * 157.94662 * 22 20 19 24 24 Si 1.86800 * 120.00103 * 337.94637 * 22 20 19 25 25 H 1.48500 * 109.47039 * 93.13884 * 24 22 20 26 26 H 1.48496 * 109.47414 * 213.14319 * 24 22 20 27 27 H 1.48498 * 109.46938 * 333.13948 * 24 22 20 28 28 N 1.46506 * 109.46787 * 294.99791 * 5 4 2 29 29 C 1.36878 * 126.39895 * 120.00239 * 28 5 4 30 30 C 1.34665 * 106.81957 * 179.97438 * 29 28 5 31 31 N 1.34124 * 108.02093 * 359.97438 * 30 29 28 32 32 C 1.30497 * 109.25559 * 359.72680 * 31 30 29 33 33 H 1.08990 * 109.47152 * 180.02562 * 1 2 3 34 34 H 1.09004 * 109.46741 * 300.00661 * 1 2 3 35 35 H 1.08996 * 109.46479 * 60.00174 * 1 2 3 36 36 H 1.09005 * 109.47030 * 119.99732 * 2 1 3 37 37 H 1.08993 * 109.47279 * 59.99572 * 3 2 1 38 38 H 1.09002 * 109.46912 * 180.02562 * 3 2 1 39 39 H 1.09005 * 109.46749 * 299.99904 * 3 2 1 40 40 H 1.09008 * 109.47071 * 55.00795 * 4 2 1 41 41 H 1.09004 * 109.47186 * 175.00438 * 4 2 1 42 42 H 0.97004 * 119.99124 * 359.97438 * 9 7 5 43 43 H 1.09007 * 110.62379 * 0.02562 * 12 10 9 44 44 H 1.08999 * 110.62625 * 123.01597 * 12 10 9 45 45 H 1.08998 * 110.62725 * 190.31649 * 15 13 12 46 46 H 1.09005 * 110.63123 * 313.33148 * 15 13 12 47 47 H 1.08995 * 110.35600 * 241.21759 * 16 15 13 48 48 H 1.08997 * 110.88289 * 118.36341 * 16 15 13 49 49 H 0.97000 * 119.99720 * 180.02562 * 23 22 20 50 50 H 1.08009 * 126.58609 * 359.96151 * 29 28 5 51 51 H 1.08009 * 125.98893 * 180.02562 * 30 29 28 52 52 H 1.08001 * 125.65471 * 180.28927 * 32 31 30 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 1.6351 -2.1955 -1.1879 6 1 0.5562 -2.2707 -1.0527 7 6 2.0292 -2.8786 -2.4720 8 8 2.5794 -2.2482 -3.3501 9 7 1.7704 -4.1899 -2.6449 10 6 2.1531 -4.8538 -3.8935 11 1 3.0988 -4.4577 -4.2633 12 6 1.0409 -4.6944 -4.9591 13 6 0.6091 -6.1624 -5.2547 14 1 -0.3816 -6.2819 -5.6933 15 6 1.7855 -6.7734 -6.0739 16 6 2.9063 -6.9388 -4.9915 17 6 2.2417 -6.3964 -3.6903 18 1 2.6891 -6.7221 -2.7512 19 7 0.8108 -6.7984 -3.9086 20 6 -0.0461 -7.5215 -3.1225 21 1 -1.0903 -7.5957 -3.3882 22 6 0.4273 -8.1590 -1.9839 23 7 -0.4034 -8.4749 -1.0130 24 14 2.2433 -8.5687 -1.8296 25 1 2.9407 -7.4665 -1.1197 26 1 2.4027 -9.8304 -1.0629 27 1 2.8299 -8.7348 -3.1836 28 7 2.3146 -2.8421 -0.0624 29 6 1.7152 -3.4531 1.0058 30 6 2.7034 -3.9101 1.7982 31 7 3.8743 -3.5875 1.2292 32 6 3.6492 -2.9530 0.1113 33 1 -0.3633 -1.0276 0.0005 34 1 -0.3633 0.5140 0.8900 35 1 -0.3632 0.5138 -0.8900 36 1 1.8934 -0.5138 0.8901 37 1 1.6768 1.9563 0.8899 38 1 3.1301 1.4423 -0.0005 39 1 1.6768 1.9563 -0.8901 40 1 1.6054 -0.2619 -2.1370 41 1 3.1264 -0.6446 -1.2951 42 1 1.3308 -4.6941 -1.9424 43 1 0.2048 -4.1210 -4.5587 44 1 1.4357 -4.2218 -5.8585 45 1 1.5039 -7.7424 -6.4859 46 1 2.0952 -6.0931 -6.8673 47 1 3.7789 -6.3411 -5.2548 48 1 3.1814 -7.9869 -4.8740 49 1 -0.0725 -8.9201 -0.2173 50 1 0.6536 -3.5498 1.1797 51 1 2.5755 -4.4438 2.7285 52 1 4.4050 -2.5762 -0.5620 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001110697084.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:57:31 Heat of formation + Delta-G solvation = 73.230063 kcal Electronic energy + Delta-G solvation = -32747.138974 eV Core-core repulsion = 28749.186350 eV Total energy + Delta-G solvation = -3997.952624 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -42.17183 -40.16351 -38.95024 -36.91883 -34.16037 -33.55645 -32.64620 -29.89412 -29.71839 -29.33854 -28.94916 -28.31874 -27.43230 -24.91441 -24.05036 -22.16967 -21.37795 -21.19380 -20.37347 -20.20638 -19.72091 -19.05467 -17.87542 -17.16406 -16.80918 -16.46008 -15.77180 -15.37283 -14.71289 -14.60530 -14.42728 -14.08683 -14.02800 -13.92179 -13.73708 -13.52433 -13.39874 -13.18696 -12.90397 -12.69054 -12.48047 -12.37519 -12.36768 -11.97332 -11.63798 -11.50392 -11.23024 -11.16344 -11.10710 -11.00030 -10.97190 -10.87521 -10.45451 -10.40649 -10.24621 -9.89293 -9.86485 -9.73454 -9.37144 -9.29498 -9.00593 -8.73922 -8.40230 -7.36366 -6.03130 -3.29086 2.08021 2.22260 3.10510 3.18833 3.24435 3.31752 3.38670 3.43807 4.33283 4.42666 4.44878 4.54341 4.59725 4.76343 4.78195 4.82499 4.94749 5.00073 5.05774 5.20322 5.30193 5.37621 5.40766 5.47202 5.52731 5.56200 5.59019 5.60523 5.66894 5.70880 5.71341 5.78693 5.81004 5.81393 5.90865 5.94287 6.03425 6.08296 6.12408 6.15151 6.30422 6.33295 6.37909 6.54776 6.63275 6.76241 6.82414 6.86241 7.19082 7.24575 7.67674 8.16801 8.20138 8.24371 8.61038 9.53957 10.13117 11.12746 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.011532 B = 0.004303 C = 0.003669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2427.421663 B = 6505.225944 C = 7630.371100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.099 4.099 3 C -0.144 4.144 4 C -0.106 4.106 5 C 0.116 3.884 6 H 0.124 0.876 7 C 0.503 3.497 8 O -0.537 6.537 9 N -0.694 5.694 10 C 0.131 3.869 11 H 0.085 0.915 12 C -0.135 4.135 13 C 0.140 3.860 14 H 0.095 0.905 15 C -0.133 4.133 16 C -0.134 4.134 17 C 0.116 3.884 18 H 0.095 0.905 19 N -0.604 5.604 20 C -0.229 4.229 21 H 0.098 0.902 22 C 0.020 3.980 23 N -0.909 5.909 24 Si 0.864 3.136 25 H -0.289 1.289 26 H -0.303 1.303 27 H -0.261 1.261 28 N -0.448 5.448 29 C -0.049 4.049 30 C -0.027 4.027 31 N -0.492 5.492 32 C 0.187 3.813 33 H 0.054 0.946 34 H 0.057 0.943 35 H 0.057 0.943 36 H 0.073 0.927 37 H 0.055 0.945 38 H 0.055 0.945 39 H 0.056 0.944 40 H 0.091 0.909 41 H 0.078 0.922 42 H 0.409 0.591 43 H 0.064 0.936 44 H 0.065 0.935 45 H 0.061 0.939 46 H 0.060 0.940 47 H 0.058 0.942 48 H 0.069 0.931 49 H 0.263 0.737 50 H 0.176 0.824 51 H 0.169 0.831 52 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.040 15.718 -0.972 16.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.117 4.117 3 C -0.201 4.201 4 C -0.144 4.144 5 C 0.009 3.991 6 H 0.142 0.858 7 C 0.286 3.714 8 O -0.414 6.414 9 N -0.343 5.343 10 C 0.024 3.976 11 H 0.103 0.897 12 C -0.175 4.175 13 C 0.033 3.967 14 H 0.113 0.887 15 C -0.173 4.173 16 C -0.173 4.173 17 C 0.009 3.991 18 H 0.113 0.887 19 N -0.326 5.326 20 C -0.355 4.355 21 H 0.116 0.884 22 C -0.178 4.178 23 N -0.553 5.553 24 Si 0.697 3.303 25 H -0.217 1.217 26 H -0.231 1.231 27 H -0.187 1.187 28 N -0.133 5.133 29 C -0.181 4.181 30 C -0.175 4.175 31 N -0.210 5.210 32 C -0.095 4.095 33 H 0.073 0.927 34 H 0.076 0.924 35 H 0.076 0.924 36 H 0.091 0.909 37 H 0.074 0.926 38 H 0.074 0.926 39 H 0.075 0.925 40 H 0.110 0.890 41 H 0.097 0.903 42 H 0.245 0.755 43 H 0.083 0.917 44 H 0.083 0.917 45 H 0.079 0.921 46 H 0.079 0.921 47 H 0.077 0.923 48 H 0.088 0.912 49 H 0.073 0.927 50 H 0.193 0.807 51 H 0.186 0.814 52 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges 3.941 15.810 -1.127 16.332 hybrid contribution -0.057 -0.625 0.260 0.679 sum 3.884 15.185 -0.867 15.698 Atomic orbital electron populations 1.21922 0.95000 1.01816 1.02101 1.21135 0.96050 0.96523 0.97999 1.21787 1.01062 0.95465 1.01809 1.21805 1.02776 0.90419 0.99398 1.21774 0.99896 0.94065 0.83337 0.85827 1.20415 0.79773 0.82881 0.88358 1.90703 1.42310 1.64518 1.43830 1.46072 1.59277 1.09026 1.19905 1.22590 0.97466 0.93990 0.83504 0.89743 1.23351 0.98028 0.98429 0.97719 1.22937 0.96549 0.90786 0.86467 0.88651 1.23302 0.96787 1.00549 0.96623 1.23351 0.97074 1.01251 0.95647 1.23357 0.87924 0.90834 0.97033 0.88735 1.46898 1.08041 1.60973 1.16729 1.18638 0.90365 1.24372 1.02110 0.88400 1.24686 0.96837 1.00330 0.95924 1.69813 1.34415 1.44637 1.06404 0.87218 0.87567 0.77449 0.78102 1.21747 1.23108 1.18668 1.45421 1.07499 1.42718 1.17662 1.22805 1.00237 1.04431 0.90583 1.22270 0.87898 1.05390 1.01918 1.70302 1.28119 1.15338 1.07235 1.24845 0.83848 1.03054 0.97794 0.92690 0.92423 0.92357 0.90850 0.92600 0.92621 0.92523 0.89010 0.90335 0.75531 0.91743 0.91654 0.92052 0.92115 0.92326 0.91211 0.92693 0.80723 0.81419 0.78611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 8.95 37.16 0.33 -0.90 16 2 C -0.10 -0.88 2.86 -90.62 -0.26 -1.14 16 3 C -0.14 -1.14 9.19 37.16 0.34 -0.80 16 4 C -0.11 -1.08 3.50 -26.73 -0.09 -1.17 16 5 C 0.12 1.38 2.64 -69.08 -0.18 1.19 16 6 H 0.12 1.32 6.29 -51.93 -0.33 0.99 16 7 C 0.50 7.56 7.04 -10.99 -0.08 7.48 16 8 O -0.54 -9.10 15.64 5.55 0.09 -9.01 16 9 N -0.69 -11.67 5.10 -51.40 -0.26 -11.93 16 10 C 0.13 2.28 2.73 -65.44 -0.18 2.10 16 11 H 0.08 1.45 7.36 -51.93 -0.38 1.07 16 12 C -0.13 -2.20 6.22 -24.24 -0.15 -2.35 16 13 C 0.14 2.48 5.43 -62.81 -0.34 2.14 16 14 H 0.10 1.62 8.14 -51.93 -0.42 1.20 16 15 C -0.13 -2.13 6.58 -23.23 -0.15 -2.28 16 16 C -0.13 -2.35 6.26 -23.22 -0.15 -2.49 16 17 C 0.12 2.31 3.14 -62.81 -0.20 2.11 16 18 H 0.10 2.11 3.47 -51.93 -0.18 1.93 16 19 N -0.60 -13.16 2.85 -145.83 -0.42 -13.58 16 20 C -0.23 -5.97 10.94 -15.06 -0.16 -6.14 16 21 H 0.10 2.74 8.06 -52.49 -0.42 2.31 16 22 C 0.02 0.56 5.49 -17.43 -0.10 0.46 16 23 N -0.91 -26.58 13.97 55.49 0.78 -25.80 16 24 Si 0.86 21.46 24.63 -169.99 -4.19 17.27 16 25 H -0.29 -7.23 6.76 56.52 0.38 -6.85 16 26 H -0.30 -7.85 7.11 56.52 0.40 -7.45 16 27 H -0.26 -6.16 4.83 56.52 0.27 -5.88 16 28 N -0.45 -5.78 1.98 -112.70 -0.22 -6.00 16 29 C -0.05 -0.64 11.54 -16.56 -0.19 -0.83 16 30 C -0.03 -0.41 11.87 -17.82 -0.21 -0.62 16 31 N -0.49 -8.03 11.25 -14.66 -0.16 -8.20 16 32 C 0.19 2.69 11.59 -90.38 -1.05 1.64 16 33 H 0.05 0.46 6.46 -51.93 -0.34 0.12 16 34 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 35 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.07 0.76 7.62 -51.93 -0.40 0.36 16 37 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 39 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.09 0.95 7.96 -51.92 -0.41 0.54 16 41 H 0.08 0.85 7.81 -51.93 -0.41 0.44 16 42 H 0.41 7.50 8.62 -40.82 -0.35 7.15 16 43 H 0.06 1.09 7.98 -51.93 -0.41 0.67 16 44 H 0.06 0.95 7.80 -51.93 -0.40 0.55 16 45 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 46 H 0.06 0.82 7.81 -51.93 -0.41 0.41 16 47 H 0.06 0.89 7.82 -51.93 -0.41 0.48 16 48 H 0.07 1.31 6.58 -51.93 -0.34 0.97 16 49 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 50 H 0.18 1.91 8.06 -52.48 -0.42 1.49 16 51 H 0.17 2.15 8.06 -52.48 -0.42 1.73 16 52 H 0.20 2.47 8.06 -52.49 -0.42 2.05 16 LS Contribution 401.20 15.07 6.05 6.05 Total: -1.00 -30.93 401.20 -9.86 -40.79 By element: Atomic # 1 Polarization: 20.70 SS G_CDS: -8.70 Total: 12.00 kcal Atomic # 6 Polarization: 1.23 SS G_CDS: -2.81 Total: -1.58 kcal Atomic # 7 Polarization: -65.22 SS G_CDS: -0.29 Total: -65.51 kcal Atomic # 8 Polarization: -9.10 SS G_CDS: 0.09 Total: -9.01 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -4.19 Total: 17.27 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -30.93 -9.86 -40.79 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001110697084.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.016 kcal (2) G-P(sol) polarization free energy of solvation -30.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.786 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds