Wall clock time and date at job start Wed Apr 1 2020 03:57:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47522 * 2 1 4 4 C 1.53000 * 109.47049 * 239.99287 * 2 1 3 5 5 C 1.52994 * 109.47489 * 295.00738 * 4 2 1 6 6 H 1.08994 * 109.47364 * 54.99790 * 5 4 2 7 7 C 1.50699 * 109.47540 * 175.00008 * 5 4 2 8 8 O 1.21290 * 119.99479 * 359.97438 * 7 5 4 9 9 N 1.34774 * 120.00772 * 179.97438 * 7 5 4 10 10 C 1.46498 * 120.00518 * 179.97438 * 9 7 5 11 11 H 1.08996 * 110.55586 * 36.44898 * 10 9 7 12 12 C 1.54849 * 110.62745 * 273.54697 * 10 9 7 13 13 C 1.55844 * 103.44513 * 241.50879 * 12 10 9 14 14 H 1.09004 * 115.55356 * 158.80887 * 13 12 10 15 15 C 1.55835 * 105.06405 * 287.42336 * 13 12 10 16 16 C 1.56687 * 102.60085 * 72.30333 * 15 13 12 17 17 C 1.55843 * 103.59434 * 359.66498 * 16 15 13 18 18 H 1.09003 * 116.12417 * 159.38198 * 17 16 15 19 19 N 1.50229 * 101.05406 * 33.16682 * 17 16 15 20 20 C 1.36938 * 130.83594 * 126.05217 * 19 17 16 21 21 H 1.07998 * 120.00134 * 171.55304 * 20 19 17 22 22 C 1.38812 * 120.00142 * 351.55226 * 20 19 17 23 23 N 1.31626 * 120.00067 * 157.94662 * 22 20 19 24 24 Si 1.86800 * 120.00103 * 337.94637 * 22 20 19 25 25 H 1.48500 * 109.47039 * 93.13884 * 24 22 20 26 26 H 1.48496 * 109.47414 * 213.14319 * 24 22 20 27 27 H 1.48498 * 109.46938 * 333.13948 * 24 22 20 28 28 N 1.46506 * 109.46787 * 294.99791 * 5 4 2 29 29 C 1.36878 * 126.39895 * 120.00239 * 28 5 4 30 30 C 1.34665 * 106.81957 * 179.97438 * 29 28 5 31 31 N 1.34124 * 108.02093 * 359.97438 * 30 29 28 32 32 C 1.30497 * 109.25559 * 359.72680 * 31 30 29 33 33 H 1.08990 * 109.47152 * 180.02562 * 1 2 3 34 34 H 1.09004 * 109.46741 * 300.00661 * 1 2 3 35 35 H 1.08996 * 109.46479 * 60.00174 * 1 2 3 36 36 H 1.09005 * 109.47030 * 119.99732 * 2 1 3 37 37 H 1.08993 * 109.47279 * 59.99572 * 3 2 1 38 38 H 1.09002 * 109.46912 * 180.02562 * 3 2 1 39 39 H 1.09005 * 109.46749 * 299.99904 * 3 2 1 40 40 H 1.09008 * 109.47071 * 55.00795 * 4 2 1 41 41 H 1.09004 * 109.47186 * 175.00438 * 4 2 1 42 42 H 0.97004 * 119.99124 * 359.97438 * 9 7 5 43 43 H 1.09007 * 110.62379 * 0.02562 * 12 10 9 44 44 H 1.08999 * 110.62625 * 123.01597 * 12 10 9 45 45 H 1.08998 * 110.62725 * 190.31649 * 15 13 12 46 46 H 1.09005 * 110.63123 * 313.33148 * 15 13 12 47 47 H 1.08995 * 110.35600 * 241.21759 * 16 15 13 48 48 H 1.08997 * 110.88289 * 118.36341 * 16 15 13 49 49 H 0.97000 * 119.99720 * 180.02562 * 23 22 20 50 50 H 1.08009 * 126.58609 * 359.96151 * 29 28 5 51 51 H 1.08009 * 125.98893 * 180.02562 * 30 29 28 52 52 H 1.08001 * 125.65471 * 180.28927 * 32 31 30 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 1.6351 -2.1955 -1.1879 6 1 0.5562 -2.2707 -1.0527 7 6 2.0292 -2.8786 -2.4720 8 8 2.5794 -2.2482 -3.3501 9 7 1.7704 -4.1899 -2.6449 10 6 2.1531 -4.8538 -3.8935 11 1 3.0988 -4.4577 -4.2633 12 6 1.0409 -4.6944 -4.9591 13 6 0.6091 -6.1624 -5.2547 14 1 -0.3816 -6.2819 -5.6933 15 6 1.7855 -6.7734 -6.0739 16 6 2.9063 -6.9388 -4.9915 17 6 2.2417 -6.3964 -3.6903 18 1 2.6891 -6.7221 -2.7512 19 7 0.8108 -6.7984 -3.9086 20 6 -0.0461 -7.5215 -3.1225 21 1 -1.0903 -7.5957 -3.3882 22 6 0.4273 -8.1590 -1.9839 23 7 -0.4034 -8.4749 -1.0130 24 14 2.2433 -8.5687 -1.8296 25 1 2.9407 -7.4665 -1.1197 26 1 2.4027 -9.8304 -1.0629 27 1 2.8299 -8.7348 -3.1836 28 7 2.3146 -2.8421 -0.0624 29 6 1.7152 -3.4531 1.0058 30 6 2.7034 -3.9101 1.7982 31 7 3.8743 -3.5875 1.2292 32 6 3.6492 -2.9530 0.1113 33 1 -0.3633 -1.0276 0.0005 34 1 -0.3633 0.5140 0.8900 35 1 -0.3632 0.5138 -0.8900 36 1 1.8934 -0.5138 0.8901 37 1 1.6768 1.9563 0.8899 38 1 3.1301 1.4423 -0.0005 39 1 1.6768 1.9563 -0.8901 40 1 1.6054 -0.2619 -2.1370 41 1 3.1264 -0.6446 -1.2951 42 1 1.3308 -4.6941 -1.9424 43 1 0.2048 -4.1210 -4.5587 44 1 1.4357 -4.2218 -5.8585 45 1 1.5039 -7.7424 -6.4859 46 1 2.0952 -6.0931 -6.8673 47 1 3.7789 -6.3411 -5.2548 48 1 3.1814 -7.9869 -4.8740 49 1 -0.0725 -8.9201 -0.2173 50 1 0.6536 -3.5498 1.1797 51 1 2.5755 -4.4438 2.7285 52 1 4.4050 -2.5762 -0.5620 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001110697084.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:57:30 Heat of formation + Delta-G solvation = 56.086192 kcal Electronic energy + Delta-G solvation = -32747.882388 eV Core-core repulsion = 28749.186350 eV Total energy + Delta-G solvation = -3998.696038 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -43.25827 -41.52593 -40.25211 -37.79961 -35.47226 -34.74406 -34.44852 -31.52026 -30.97131 -30.70698 -30.08376 -29.54065 -28.06887 -26.11155 -25.66940 -23.38387 -22.51067 -22.29705 -21.99809 -21.25470 -20.71554 -20.48993 -19.10905 -18.90523 -18.08070 -17.68011 -17.09385 -16.59462 -16.01870 -15.79253 -15.48132 -15.34376 -15.32174 -15.15941 -14.93475 -14.87050 -14.71054 -14.33568 -14.27080 -13.94492 -13.69465 -13.32468 -13.27323 -13.06761 -12.98242 -12.88935 -12.85759 -12.69771 -12.42748 -12.00967 -11.92037 -11.87411 -11.75531 -11.60782 -11.59131 -11.42777 -11.26544 -11.07791 -11.00924 -10.93876 -10.47074 -10.13049 -9.50100 -9.23667 -8.14295 -5.33131 0.96381 1.10671 1.23276 1.36221 1.41989 1.99845 2.00184 2.17648 2.39159 2.91259 3.15133 3.35004 3.44852 3.70474 3.74238 3.75884 3.79710 3.84395 4.01072 4.01883 4.05277 4.21627 4.27256 4.27960 4.44441 4.49152 4.53072 4.57689 4.64703 4.68061 4.70576 4.73010 4.76382 4.81080 4.91625 4.98591 5.02600 5.03877 5.08317 5.18162 5.21052 5.25977 5.29883 5.37551 5.38983 5.43168 5.51416 5.57979 5.74834 6.11596 6.11826 6.35774 6.61452 6.96077 7.05828 7.49080 8.21923 9.05263 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.011532 B = 0.004303 C = 0.003669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2427.421663 B = 6505.225944 C = 7630.371100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.091 4.091 3 C -0.142 4.142 4 C -0.098 4.098 5 C 0.123 3.877 6 H 0.140 0.860 7 C 0.507 3.493 8 O -0.551 6.551 9 N -0.703 5.703 10 C 0.136 3.864 11 H 0.094 0.906 12 C -0.122 4.122 13 C 0.133 3.867 14 H 0.100 0.900 15 C -0.121 4.121 16 C -0.133 4.133 17 C 0.105 3.895 18 H 0.069 0.931 19 N -0.624 5.624 20 C -0.199 4.199 21 H 0.072 0.928 22 C -0.031 4.031 23 N -0.954 5.954 24 Si 0.919 3.081 25 H -0.298 1.298 26 H -0.324 1.324 27 H -0.243 1.243 28 N -0.442 5.442 29 C -0.043 4.043 30 C -0.053 4.053 31 N -0.525 5.525 32 C 0.179 3.821 33 H 0.052 0.948 34 H 0.063 0.937 35 H 0.064 0.936 36 H 0.058 0.942 37 H 0.062 0.938 38 H 0.052 0.948 39 H 0.063 0.937 40 H 0.095 0.905 41 H 0.072 0.928 42 H 0.401 0.599 43 H 0.056 0.944 44 H 0.093 0.907 45 H 0.058 0.942 46 H 0.098 0.902 47 H 0.088 0.912 48 H 0.053 0.947 49 H 0.257 0.743 50 H 0.197 0.803 51 H 0.178 0.822 52 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.598 17.818 -3.091 18.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.110 4.110 3 C -0.200 4.200 4 C -0.136 4.136 5 C 0.017 3.983 6 H 0.157 0.843 7 C 0.291 3.709 8 O -0.429 6.429 9 N -0.351 5.351 10 C 0.030 3.970 11 H 0.112 0.888 12 C -0.162 4.162 13 C 0.028 3.972 14 H 0.118 0.882 15 C -0.160 4.160 16 C -0.172 4.172 17 C -0.002 4.002 18 H 0.086 0.914 19 N -0.347 5.347 20 C -0.327 4.327 21 H 0.089 0.911 22 C -0.225 4.225 23 N -0.602 5.602 24 Si 0.753 3.247 25 H -0.227 1.227 26 H -0.254 1.254 27 H -0.167 1.167 28 N -0.126 5.126 29 C -0.175 4.175 30 C -0.199 4.199 31 N -0.243 5.243 32 C -0.103 4.103 33 H 0.071 0.929 34 H 0.082 0.918 35 H 0.083 0.917 36 H 0.077 0.923 37 H 0.081 0.919 38 H 0.071 0.929 39 H 0.082 0.918 40 H 0.114 0.886 41 H 0.091 0.909 42 H 0.234 0.766 43 H 0.075 0.925 44 H 0.112 0.888 45 H 0.077 0.923 46 H 0.116 0.884 47 H 0.106 0.894 48 H 0.072 0.928 49 H 0.066 0.934 50 H 0.214 0.786 51 H 0.196 0.804 52 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges 4.533 17.955 -3.316 18.813 hybrid contribution -0.272 -1.202 0.839 1.491 sum 4.261 16.753 -2.476 17.463 Atomic orbital electron populations 1.21924 0.94217 1.01863 1.02785 1.21057 0.96621 0.96799 0.96527 1.21774 1.00898 0.94787 1.02503 1.21784 1.02467 0.89167 1.00222 1.21844 1.00600 0.94464 0.81433 0.84286 1.20799 0.78871 0.82130 0.89088 1.90693 1.42853 1.64638 1.44716 1.46164 1.59647 1.09696 1.19585 1.22511 0.98368 0.91992 0.84128 0.88803 1.23269 0.97370 0.97242 0.98353 1.23222 0.97888 0.91309 0.84788 0.88163 1.23260 0.94915 1.01228 0.96605 1.23355 0.98548 1.00649 0.94686 1.23456 0.86779 0.92818 0.97128 0.91384 1.46962 1.08665 1.60656 1.18440 1.18534 0.90044 1.22491 1.01668 0.91053 1.25094 0.99332 1.01849 0.96246 1.69919 1.35851 1.47230 1.07231 0.86356 0.84357 0.75687 0.78345 1.22692 1.25380 1.16691 1.45427 1.07118 1.42380 1.17704 1.23154 1.01029 1.03267 0.90086 1.22601 0.88032 1.06367 1.02935 1.70256 1.29234 1.16478 1.08361 1.25088 0.84681 1.02891 0.97637 0.92945 0.91802 0.91667 0.92311 0.91940 0.92919 0.91807 0.88625 0.90921 0.76554 0.92473 0.88819 0.92281 0.88382 0.89352 0.92814 0.93356 0.78586 0.80440 0.77386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.12 8.95 71.98 0.64 -1.48 16 2 C -0.09 -1.46 2.86 -10.79 -0.03 -1.49 16 3 C -0.14 -1.98 9.19 71.98 0.66 -1.31 16 4 C -0.10 -1.82 3.50 30.59 0.11 -1.71 16 5 C 0.12 2.70 2.64 44.24 0.12 2.82 16 6 H 0.14 2.68 6.29 -2.39 -0.02 2.66 16 7 C 0.51 14.26 7.04 87.66 0.62 14.88 16 8 O -0.55 -17.30 15.64 -3.06 -0.05 -17.35 16 9 N -0.70 -22.56 5.10 -434.92 -2.22 -24.78 16 10 C 0.14 4.39 2.73 46.61 0.13 4.52 16 11 H 0.09 2.89 7.36 -2.39 -0.02 2.87 16 12 C -0.12 -3.57 6.22 32.21 0.20 -3.37 16 13 C 0.13 4.36 5.43 46.23 0.25 4.61 16 14 H 0.10 3.16 8.14 -2.38 -0.02 3.14 16 15 C -0.12 -3.37 6.58 32.86 0.22 -3.16 16 16 C -0.13 -4.24 6.26 32.87 0.21 -4.03 16 17 C 0.10 3.98 3.14 46.23 0.15 4.13 16 18 H 0.07 2.99 3.47 -2.39 -0.01 2.98 16 19 N -0.62 -26.45 2.85 -615.30 -1.76 -28.21 16 20 C -0.20 -10.49 10.94 84.03 0.92 -9.57 16 21 H 0.07 4.08 8.06 -2.91 -0.02 4.06 16 22 C -0.03 -1.74 5.49 84.86 0.47 -1.28 16 23 N -0.95 -57.67 13.97 21.65 0.30 -57.37 16 24 Si 0.92 45.74 24.63 68.60 1.69 47.43 16 25 H -0.30 -14.99 6.76 99.48 0.67 -14.32 16 26 H -0.32 -17.02 7.11 99.48 0.71 -16.31 16 27 H -0.24 -11.12 4.83 99.48 0.48 -10.63 16 28 N -0.44 -10.98 1.98 -510.47 -1.01 -11.99 16 29 C -0.04 -1.11 11.54 83.09 0.96 -0.15 16 30 C -0.05 -1.56 11.87 83.52 0.99 -0.57 16 31 N -0.52 -17.20 11.25 -200.31 -2.25 -19.45 16 32 C 0.18 5.07 11.59 180.26 2.09 7.16 16 33 H 0.05 0.76 6.46 -2.39 -0.02 0.74 16 34 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 35 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 36 H 0.06 1.14 7.62 -2.38 -0.02 1.12 16 37 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 38 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 39 H 0.06 0.80 8.14 -2.38 -0.02 0.78 16 40 H 0.10 1.74 7.96 -2.38 -0.02 1.73 16 41 H 0.07 1.45 7.81 -2.38 -0.02 1.43 16 42 H 0.40 14.44 8.62 -92.71 -0.80 13.64 16 43 H 0.06 1.76 7.98 -2.38 -0.02 1.75 16 44 H 0.09 2.25 7.80 -2.39 -0.02 2.23 16 45 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 46 H 0.10 2.06 7.81 -2.38 -0.02 2.05 16 47 H 0.09 2.30 7.82 -2.39 -0.02 2.28 16 48 H 0.05 1.88 6.58 -2.39 -0.02 1.87 16 49 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16 50 H 0.20 4.05 8.06 -2.91 -0.02 4.02 16 51 H 0.18 4.62 8.06 -2.91 -0.02 4.60 16 52 H 0.21 5.11 8.06 -2.91 -0.02 5.08 16 Total: -1.00 -68.02 401.20 3.25 -64.77 By element: Atomic # 1 Polarization: 37.09 SS G_CDS: -0.14 Total: 36.95 kcal Atomic # 6 Polarization: 1.31 SS G_CDS: 8.69 Total: 10.00 kcal Atomic # 7 Polarization: -134.86 SS G_CDS: -6.93 Total: -141.80 kcal Atomic # 8 Polarization: -17.30 SS G_CDS: -0.05 Total: -17.35 kcal Atomic # 14 Polarization: 45.74 SS G_CDS: 1.69 Total: 47.43 kcal Total: -68.02 3.25 -64.77 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001110697084.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.856 kcal (2) G-P(sol) polarization free energy of solvation -68.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.770 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds