Wall clock time and date at job start Wed Apr 1 2020 04:37:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50700 * 120.00438 * 2 1 4 4 N 1.46501 * 109.47143 * 125.92950 * 3 2 1 5 5 C 1.36458 * 127.13233 * 275.09912 * 4 3 2 6 6 N 1.38580 * 126.47386 * 0.02775 * 5 4 3 7 7 C 1.47120 * 110.99563 * 286.04877 * 6 5 4 8 8 C 1.51687 * 108.63794 * 171.86261 * 7 6 5 9 9 C 1.51387 * 111.65010 * 57.87873 * 8 7 6 10 10 H 1.09004 * 109.33423 * 188.03204 * 9 8 7 11 11 O 1.43482 * 112.51526 * 66.97406 * 9 8 7 12 12 C 1.44077 * 106.30917 * 196.75796 * 11 9 8 13 13 C 1.54191 * 107.30855 * 25.98703 * 12 11 9 14 14 C 1.54183 * 112.42383 * 309.61492 * 9 8 7 15 15 H 1.09001 * 112.44971 * 281.33444 * 14 9 8 16 16 C 1.46516 * 110.99884 * 163.02526 * 6 5 4 17 17 N 1.31215 * 107.05143 * 180.28487 * 5 4 3 18 18 N 1.28526 * 109.86127 * 359.56107 * 17 5 4 19 19 C 1.30296 * 110.05068 * 0.45504 * 18 17 5 20 20 C 1.50702 * 126.34401 * 179.76137 * 19 18 17 21 21 C 1.53006 * 109.46787 * 125.43078 * 20 19 18 22 22 C 1.53000 * 109.47070 * 245.42726 * 20 19 18 23 23 C 1.50703 * 109.47566 * 5.43178 * 20 19 18 24 24 H 1.07995 * 119.99396 * 359.97438 * 23 20 19 25 25 C 1.37869 * 120.00019 * 180.02562 * 23 20 19 26 26 N 1.31508 * 120.00456 * 359.97438 * 25 23 20 27 27 Si 1.86800 * 119.99678 * 179.97438 * 25 23 20 28 28 H 1.48501 * 109.47507 * 60.00029 * 27 25 23 29 29 H 1.48504 * 109.47115 * 179.97438 * 27 25 23 30 30 H 1.48501 * 109.47237 * 299.99591 * 27 25 23 31 31 H 1.08002 * 119.99903 * 179.97438 * 1 2 3 32 32 H 1.08005 * 119.99671 * 0.02562 * 1 2 3 33 33 H 1.08009 * 119.99628 * 180.02562 * 2 1 3 34 34 H 1.09001 * 109.46868 * 5.92744 * 3 2 1 35 35 H 1.08998 * 109.47037 * 245.92708 * 3 2 1 36 36 H 1.09001 * 109.68132 * 291.20019 * 7 6 5 37 37 H 1.08997 * 109.68161 * 51.71496 * 7 6 5 38 38 H 1.09002 * 108.14599 * 297.74340 * 8 7 6 39 39 H 1.09004 * 109.51737 * 178.92389 * 8 7 6 40 40 H 1.09005 * 109.87425 * 266.55855 * 12 11 9 41 41 H 1.08998 * 110.00026 * 145.48505 * 12 11 9 42 42 H 1.09007 * 110.52739 * 240.69256 * 13 12 11 43 43 H 1.09005 * 110.64661 * 118.00606 * 13 12 11 44 44 H 1.08993 * 109.20992 * 66.72693 * 16 6 5 45 45 H 1.09004 * 109.16862 * 307.39063 * 16 6 5 46 46 H 1.08996 * 109.47270 * 66.41849 * 21 20 19 47 47 H 1.09008 * 109.47092 * 186.41624 * 21 20 19 48 48 H 1.08999 * 109.47111 * 306.41035 * 21 20 19 49 49 H 1.08997 * 109.46796 * 65.70410 * 22 20 19 50 50 H 1.09007 * 109.47117 * 185.69786 * 22 20 19 51 51 H 1.08992 * 109.47155 * 305.69584 * 22 20 19 52 52 H 0.96997 * 120.00446 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 7 3.0097 1.3226 1.1184 5 6 2.7526 1.6829 2.4092 6 7 1.5356 2.1059 2.9197 7 6 1.2294 3.4774 2.4844 8 6 -0.1907 3.8121 2.8993 9 6 -0.3827 3.6749 4.3946 10 1 -1.4406 3.7830 4.6341 11 8 0.3623 4.6516 5.1361 12 6 0.4160 4.1738 6.4943 13 6 0.2781 2.6388 6.4465 14 6 0.1256 2.3218 4.9312 15 1 -0.5757 1.5090 4.7420 16 6 1.5222 2.0224 4.3824 17 7 3.8766 1.5585 3.0746 18 7 4.8044 1.1394 2.2900 19 6 4.3334 0.9821 1.0854 20 6 5.1047 0.5112 -0.1206 21 6 4.3949 -0.6938 -0.7413 22 6 5.1839 1.6416 -1.1487 23 6 6.4970 0.1137 0.2971 24 1 6.7938 0.1944 1.3324 25 6 7.3921 -0.3521 -0.6424 26 7 7.0309 -0.4499 -1.9031 27 14 9.1182 -0.8441 -0.1245 28 1 9.0419 -1.9414 0.8731 29 1 9.8781 -1.3083 -1.3130 30 1 9.8066 0.3257 0.4779 31 1 -0.5400 -0.9353 -0.0004 32 1 -0.5400 0.9354 -0.0004 33 1 1.8500 -0.9354 -0.0004 34 1 1.3601 2.1308 0.1061 35 1 2.6083 1.4100 -0.9383 36 1 1.9170 4.1760 2.9612 37 1 1.3261 3.5490 1.4010 38 1 -0.8647 3.1254 2.3872 39 1 -0.4263 4.8335 2.6002 40 1 -0.4044 4.6019 7.0705 41 1 1.3690 4.4463 6.9480 42 1 -0.6073 2.3173 6.9951 43 1 1.1707 2.1600 6.8491 44 1 2.2299 2.7446 4.7893 45 1 1.8195 1.0187 4.6863 46 1 3.4328 -0.3800 -1.1461 47 1 5.0095 -1.1047 -1.5423 48 1 4.2369 -1.4554 0.0224 49 1 5.7768 2.4610 -0.7426 50 1 5.6524 1.2712 -2.0606 51 1 4.1790 1.9976 -1.3753 52 1 7.6605 -0.7779 -2.5640 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001121561672.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:37:13 Heat of formation + Delta-G solvation = 71.851099 kcal Electronic energy + Delta-G solvation = -32670.809984 eV Core-core repulsion = 28672.797564 eV Total energy + Delta-G solvation = -3998.012420 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.32898 -40.60813 -37.30957 -36.25106 -35.11893 -33.00574 -32.53718 -32.24521 -31.03616 -28.85174 -28.06407 -26.62173 -25.90791 -25.16513 -24.41963 -23.74453 -22.02590 -21.49284 -20.71376 -20.20842 -19.52665 -18.93010 -17.21761 -16.66527 -16.11513 -16.01330 -15.85850 -15.36861 -15.26199 -14.98027 -14.65831 -14.59022 -14.22705 -13.63725 -13.40604 -13.38481 -12.96962 -12.79746 -12.50866 -12.34412 -12.19796 -11.89566 -11.83525 -11.72255 -11.43316 -11.33611 -11.19061 -11.05970 -10.89055 -10.76224 -10.63055 -10.62994 -10.60007 -10.14496 -10.08825 -9.94336 -9.82208 -9.74155 -9.53170 -9.36673 -9.09575 -8.67582 -8.36927 -7.71540 -6.01195 -4.06584 2.11299 2.47493 2.93979 3.38266 3.40210 3.47335 3.60973 3.70489 3.94059 4.27400 4.43421 4.46259 4.62478 4.69560 4.79172 4.88288 4.92661 4.97469 5.03403 5.18276 5.27884 5.28129 5.30842 5.36085 5.45537 5.48796 5.52997 5.58713 5.61358 5.69147 5.71265 5.78693 5.89788 5.90981 5.91991 6.10590 6.19426 6.47108 6.55680 6.58348 6.62501 6.68457 6.69762 6.74899 6.77998 6.90288 7.15163 7.26994 7.37713 7.64203 7.83135 7.84526 8.11412 8.33701 9.00189 9.55799 9.67872 11.02487 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.016555 B = 0.003210 C = 0.002893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1690.938670 B = 8719.353318 C = 9677.634845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.162 4.162 3 C 0.138 3.862 4 N -0.474 5.474 5 C 0.317 3.683 6 N -0.446 5.446 7 C 0.057 3.943 8 C -0.105 4.105 9 C 0.083 3.917 10 H 0.063 0.937 11 O -0.370 6.370 12 C 0.047 3.953 13 C -0.154 4.154 14 C -0.111 4.111 15 H 0.101 0.899 16 C 0.083 3.917 17 N -0.328 5.328 18 N -0.288 5.288 19 C 0.241 3.759 20 C 0.147 3.853 21 C -0.138 4.138 22 C -0.130 4.130 23 C -0.491 4.491 24 H 0.076 0.924 25 C 0.063 3.937 26 N -0.895 5.895 27 Si 0.900 3.100 28 H -0.277 1.277 29 H -0.289 1.289 30 H -0.276 1.276 31 H 0.100 0.900 32 H 0.096 0.904 33 H 0.119 0.881 34 H 0.086 0.914 35 H 0.111 0.889 36 H 0.053 0.947 37 H 0.076 0.924 38 H 0.086 0.914 39 H 0.080 0.920 40 H 0.058 0.942 41 H 0.083 0.917 42 H 0.077 0.923 43 H 0.083 0.917 44 H 0.057 0.943 45 H 0.082 0.918 46 H 0.018 0.982 47 H 0.099 0.901 48 H 0.026 0.974 49 H 0.035 0.965 50 H 0.095 0.905 51 H 0.007 0.993 52 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.512 6.214 7.499 21.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.180 4.180 3 C 0.015 3.985 4 N -0.169 5.169 5 C -0.040 4.040 6 N -0.170 5.170 7 C -0.070 4.070 8 C -0.143 4.143 9 C 0.025 3.975 10 H 0.081 0.919 11 O -0.290 6.290 12 C -0.030 4.030 13 C -0.192 4.192 14 C -0.131 4.131 15 H 0.119 0.881 16 C -0.044 4.044 17 N -0.172 5.172 18 N -0.124 5.124 19 C -0.026 4.026 20 C 0.144 3.856 21 C -0.196 4.196 22 C -0.188 4.188 23 C -0.530 4.530 24 H 0.094 0.906 25 C -0.137 4.137 26 N -0.535 5.535 27 Si 0.728 3.272 28 H -0.202 1.202 29 H -0.215 1.215 30 H -0.202 1.202 31 H 0.118 0.882 32 H 0.114 0.886 33 H 0.137 0.863 34 H 0.104 0.896 35 H 0.129 0.871 36 H 0.072 0.928 37 H 0.095 0.905 38 H 0.104 0.896 39 H 0.099 0.901 40 H 0.076 0.924 41 H 0.102 0.898 42 H 0.096 0.904 43 H 0.102 0.898 44 H 0.076 0.924 45 H 0.101 0.899 46 H 0.037 0.963 47 H 0.117 0.883 48 H 0.046 0.954 49 H 0.054 0.946 50 H 0.114 0.886 51 H 0.026 0.974 52 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -18.714 6.089 8.242 21.336 hybrid contribution 0.324 -0.065 -0.359 0.487 sum -18.390 6.024 7.884 20.896 Atomic orbital electron populations 1.23756 0.95419 1.01786 0.99998 1.23214 0.96138 0.98528 1.00161 1.21016 0.91366 0.96616 0.89515 1.46257 1.10763 1.51568 1.08262 1.22248 0.92047 1.05865 0.83809 1.58831 1.23788 1.22874 1.11483 1.22010 0.97030 0.87425 1.00567 1.20972 0.97050 1.02758 0.93547 1.22348 0.95310 0.87207 0.92650 0.91859 1.88841 1.75592 1.44655 1.19873 1.23185 1.02001 0.93350 0.84465 1.23174 1.03455 0.96272 0.96285 1.22781 0.97707 0.98299 0.94275 0.88080 1.21891 0.95454 1.03045 0.84026 1.74544 0.95697 1.20155 1.26786 1.74076 1.21502 1.17643 0.99228 1.26164 0.79547 0.98081 0.98777 1.16903 0.92733 0.92095 0.83863 1.22056 0.97667 0.98199 1.01706 1.21928 0.96940 0.97602 1.02326 1.21045 0.94149 1.42063 0.95750 0.90568 1.24856 0.98697 0.95376 0.94811 1.69768 1.35367 1.47339 1.01015 0.86508 0.83863 0.79099 0.77711 1.20223 1.21484 1.20158 0.88209 0.88587 0.86318 0.89588 0.87132 0.92835 0.90523 0.89571 0.90125 0.92351 0.89832 0.90408 0.89816 0.92432 0.89905 0.96305 0.88274 0.95441 0.94601 0.88617 0.97415 0.92898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.88 14.32 29.01 0.42 -1.46 16 2 C -0.16 -2.23 8.82 -36.03 -0.32 -2.55 16 3 C 0.14 2.06 5.56 -5.19 -0.03 2.03 16 4 N -0.47 -8.98 2.79 -115.37 -0.32 -9.30 16 5 C 0.32 5.98 6.87 -318.87 -2.19 3.79 16 6 N -0.45 -6.50 4.70 -175.42 -0.82 -7.33 16 7 C 0.06 0.72 5.29 -4.37 -0.02 0.70 16 8 C -0.11 -1.00 5.71 -28.21 -0.16 -1.16 16 9 C 0.08 0.79 3.15 -26.93 -0.08 0.71 16 10 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 11 O -0.37 -4.27 11.08 -35.23 -0.39 -4.66 16 12 C 0.05 0.42 7.64 37.78 0.29 0.70 16 13 C -0.15 -1.25 6.37 -24.75 -0.16 -1.41 16 14 C -0.11 -1.08 3.72 -88.63 -0.33 -1.41 16 15 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 16 C 0.08 1.12 3.78 -4.03 -0.02 1.10 16 17 N -0.33 -7.37 11.44 30.31 0.35 -7.02 16 18 N -0.29 -7.22 11.00 32.99 0.36 -6.86 16 19 C 0.24 5.56 6.33 -154.02 -0.98 4.58 16 20 C 0.15 3.51 0.47 -156.81 -0.07 3.44 16 21 C -0.14 -3.08 7.44 37.16 0.28 -2.80 16 22 C -0.13 -2.94 8.06 37.16 0.30 -2.64 16 23 C -0.49 -13.35 7.91 -34.44 -0.27 -13.62 16 24 H 0.08 2.20 6.95 -52.49 -0.36 1.84 16 25 C 0.06 1.67 5.13 -17.83 -0.09 1.58 16 26 N -0.90 -23.62 9.39 55.43 0.52 -23.10 16 27 Si 0.90 21.42 29.54 -169.99 -5.02 16.40 16 28 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 29 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 30 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 31 H 0.10 0.97 8.06 -52.49 -0.42 0.55 16 32 H 0.10 0.89 7.84 -52.48 -0.41 0.48 16 33 H 0.12 1.85 6.93 -52.48 -0.36 1.48 16 34 H 0.09 1.07 5.97 -51.93 -0.31 0.76 16 35 H 0.11 1.71 4.54 -51.93 -0.24 1.47 16 36 H 0.05 0.79 8.07 -51.93 -0.42 0.37 16 37 H 0.08 0.94 6.29 -51.93 -0.33 0.61 16 38 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 39 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 42 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.08 0.70 7.79 -51.93 -0.40 0.30 16 44 H 0.06 0.88 7.78 -51.93 -0.40 0.47 16 45 H 0.08 1.22 8.07 -51.93 -0.42 0.80 16 46 H 0.02 0.35 4.54 -51.93 -0.24 0.11 16 47 H 0.10 2.42 5.93 -51.92 -0.31 2.12 16 48 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 49 H 0.03 0.84 8.14 -51.93 -0.42 0.41 16 50 H 0.10 2.32 6.24 -51.92 -0.32 1.99 16 51 H 0.01 0.14 5.69 -51.93 -0.30 -0.16 16 52 H 0.26 6.67 8.31 -40.82 -0.34 6.33 16 LS Contribution 390.09 15.07 5.88 5.88 Total: -1.00 -30.55 390.09 -11.08 -41.62 By element: Atomic # 1 Polarization: 10.98 SS G_CDS: -8.18 Total: 2.80 kcal Atomic # 6 Polarization: -4.98 SS G_CDS: -3.44 Total: -8.43 kcal Atomic # 7 Polarization: -53.69 SS G_CDS: 0.08 Total: -53.61 kcal Atomic # 8 Polarization: -4.27 SS G_CDS: -0.39 Total: -4.66 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -30.55 -11.08 -41.62 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121561672.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.473 kcal (2) G-P(sol) polarization free energy of solvation -30.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.622 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds