Wall clock time and date at job start Wed Apr 1 2020 04:37:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50700 * 120.00438 * 2 1 4 4 N 1.46501 * 109.47143 * 125.92950 * 3 2 1 5 5 C 1.36458 * 127.13233 * 275.09912 * 4 3 2 6 6 N 1.38580 * 126.47386 * 0.02775 * 5 4 3 7 7 C 1.47120 * 110.99563 * 286.04877 * 6 5 4 8 8 C 1.51687 * 108.63794 * 171.86261 * 7 6 5 9 9 C 1.51387 * 111.65010 * 57.87873 * 8 7 6 10 10 H 1.09004 * 109.33423 * 188.03204 * 9 8 7 11 11 O 1.43482 * 112.51526 * 66.97406 * 9 8 7 12 12 C 1.44077 * 106.30917 * 196.75796 * 11 9 8 13 13 C 1.54191 * 107.30855 * 25.98703 * 12 11 9 14 14 C 1.54183 * 112.42383 * 309.61492 * 9 8 7 15 15 H 1.09001 * 112.44971 * 281.33444 * 14 9 8 16 16 C 1.46516 * 110.99884 * 163.02526 * 6 5 4 17 17 N 1.31215 * 107.05143 * 180.28487 * 5 4 3 18 18 N 1.28526 * 109.86127 * 359.56107 * 17 5 4 19 19 C 1.30296 * 110.05068 * 0.45504 * 18 17 5 20 20 C 1.50702 * 126.34401 * 179.76137 * 19 18 17 21 21 C 1.53006 * 109.46787 * 125.43078 * 20 19 18 22 22 C 1.53000 * 109.47070 * 245.42726 * 20 19 18 23 23 C 1.50703 * 109.47566 * 5.43178 * 20 19 18 24 24 H 1.07995 * 119.99396 * 359.97438 * 23 20 19 25 25 C 1.37869 * 120.00019 * 180.02562 * 23 20 19 26 26 N 1.31508 * 120.00456 * 359.97438 * 25 23 20 27 27 Si 1.86800 * 119.99678 * 179.97438 * 25 23 20 28 28 H 1.48501 * 109.47507 * 60.00029 * 27 25 23 29 29 H 1.48504 * 109.47115 * 179.97438 * 27 25 23 30 30 H 1.48501 * 109.47237 * 299.99591 * 27 25 23 31 31 H 1.08002 * 119.99903 * 179.97438 * 1 2 3 32 32 H 1.08005 * 119.99671 * 0.02562 * 1 2 3 33 33 H 1.08009 * 119.99628 * 180.02562 * 2 1 3 34 34 H 1.09001 * 109.46868 * 5.92744 * 3 2 1 35 35 H 1.08998 * 109.47037 * 245.92708 * 3 2 1 36 36 H 1.09001 * 109.68132 * 291.20019 * 7 6 5 37 37 H 1.08997 * 109.68161 * 51.71496 * 7 6 5 38 38 H 1.09002 * 108.14599 * 297.74340 * 8 7 6 39 39 H 1.09004 * 109.51737 * 178.92389 * 8 7 6 40 40 H 1.09005 * 109.87425 * 266.55855 * 12 11 9 41 41 H 1.08998 * 110.00026 * 145.48505 * 12 11 9 42 42 H 1.09007 * 110.52739 * 240.69256 * 13 12 11 43 43 H 1.09005 * 110.64661 * 118.00606 * 13 12 11 44 44 H 1.08993 * 109.20992 * 66.72693 * 16 6 5 45 45 H 1.09004 * 109.16862 * 307.39063 * 16 6 5 46 46 H 1.08996 * 109.47270 * 66.41849 * 21 20 19 47 47 H 1.09008 * 109.47092 * 186.41624 * 21 20 19 48 48 H 1.08999 * 109.47111 * 306.41035 * 21 20 19 49 49 H 1.08997 * 109.46796 * 65.70410 * 22 20 19 50 50 H 1.09007 * 109.47117 * 185.69786 * 22 20 19 51 51 H 1.08992 * 109.47155 * 305.69584 * 22 20 19 52 52 H 0.96997 * 120.00446 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 7 3.0097 1.3226 1.1184 5 6 2.7526 1.6829 2.4092 6 7 1.5356 2.1059 2.9197 7 6 1.2294 3.4774 2.4844 8 6 -0.1907 3.8121 2.8993 9 6 -0.3827 3.6749 4.3946 10 1 -1.4406 3.7830 4.6341 11 8 0.3623 4.6516 5.1361 12 6 0.4160 4.1738 6.4943 13 6 0.2781 2.6388 6.4465 14 6 0.1256 2.3218 4.9312 15 1 -0.5757 1.5090 4.7420 16 6 1.5222 2.0224 4.3824 17 7 3.8766 1.5585 3.0746 18 7 4.8044 1.1394 2.2900 19 6 4.3334 0.9821 1.0854 20 6 5.1047 0.5112 -0.1206 21 6 4.3949 -0.6938 -0.7413 22 6 5.1839 1.6416 -1.1487 23 6 6.4970 0.1137 0.2971 24 1 6.7938 0.1944 1.3324 25 6 7.3921 -0.3521 -0.6424 26 7 7.0309 -0.4499 -1.9031 27 14 9.1182 -0.8441 -0.1245 28 1 9.0419 -1.9414 0.8731 29 1 9.8781 -1.3083 -1.3130 30 1 9.8066 0.3257 0.4779 31 1 -0.5400 -0.9353 -0.0004 32 1 -0.5400 0.9354 -0.0004 33 1 1.8500 -0.9354 -0.0004 34 1 1.3601 2.1308 0.1061 35 1 2.6083 1.4100 -0.9383 36 1 1.9170 4.1760 2.9612 37 1 1.3261 3.5490 1.4010 38 1 -0.8647 3.1254 2.3872 39 1 -0.4263 4.8335 2.6002 40 1 -0.4044 4.6019 7.0705 41 1 1.3690 4.4463 6.9480 42 1 -0.6073 2.3173 6.9951 43 1 1.1707 2.1600 6.8491 44 1 2.2299 2.7446 4.7893 45 1 1.8195 1.0187 4.6863 46 1 3.4328 -0.3800 -1.1461 47 1 5.0095 -1.1047 -1.5423 48 1 4.2369 -1.4554 0.0224 49 1 5.7768 2.4610 -0.7426 50 1 5.6524 1.2712 -2.0606 51 1 4.1790 1.9976 -1.3753 52 1 7.6605 -0.7779 -2.5640 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001121561672.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:37:09 Heat of formation + Delta-G solvation = 55.503151 kcal Electronic energy + Delta-G solvation = -32671.518884 eV Core-core repulsion = 28672.797564 eV Total energy + Delta-G solvation = -3998.721321 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 5.48 seconds Orbital eigenvalues (eV) -43.91167 -41.46569 -38.43460 -37.79917 -36.64730 -33.83703 -33.65111 -33.63442 -32.72521 -29.70026 -29.61902 -27.88152 -27.74692 -27.11205 -25.55710 -24.64358 -23.49395 -22.51458 -21.93929 -21.47446 -20.55408 -20.37363 -18.48451 -17.90201 -17.56616 -17.21698 -16.92251 -16.82766 -16.56817 -16.22513 -15.92209 -15.77243 -15.23929 -15.18979 -14.64448 -14.54251 -14.35864 -13.88360 -13.73214 -13.54465 -13.39206 -13.18676 -13.04257 -13.00513 -12.70712 -12.66351 -12.55204 -12.49158 -12.45613 -12.34179 -12.04375 -11.93289 -11.86629 -11.83201 -11.53061 -11.48093 -11.39295 -10.97817 -10.79736 -10.55687 -10.43933 -10.41926 -10.29682 -9.27973 -8.05538 -6.16285 0.89924 1.06616 1.43828 1.44253 1.52679 1.67162 2.00994 2.47002 2.71814 2.92143 3.20245 3.48854 3.62163 3.65971 3.75088 3.88762 3.90031 3.94859 3.96745 4.16120 4.16978 4.25461 4.27211 4.38656 4.43996 4.45978 4.53831 4.66702 4.75653 4.77201 4.78696 4.85276 4.85536 4.90238 4.92016 4.95925 4.98203 4.98580 5.03781 5.12920 5.19157 5.23525 5.27154 5.49130 5.57942 5.65371 5.66800 5.74232 5.81991 5.96343 5.99800 6.08140 6.31991 6.42128 6.86575 7.49243 7.99197 8.95652 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.016555 B = 0.003210 C = 0.002893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1690.938670 B = 8719.353318 C = 9677.634845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.200 4.200 3 C 0.133 3.867 4 N -0.467 5.467 5 C 0.337 3.663 6 N -0.431 5.431 7 C 0.057 3.943 8 C -0.100 4.100 9 C 0.079 3.921 10 H 0.093 0.907 11 O -0.399 6.399 12 C 0.042 3.958 13 C -0.149 4.149 14 C -0.104 4.104 15 H 0.121 0.879 16 C 0.086 3.914 17 N -0.369 5.369 18 N -0.335 5.335 19 C 0.225 3.775 20 C 0.144 3.856 21 C -0.121 4.121 22 C -0.117 4.117 23 C -0.517 4.517 24 H 0.048 0.952 25 C 0.032 3.968 26 N -0.901 5.901 27 Si 0.946 3.054 28 H -0.281 1.281 29 H -0.275 1.275 30 H -0.281 1.281 31 H 0.116 0.884 32 H 0.123 0.877 33 H 0.094 0.906 34 H 0.118 0.882 35 H 0.103 0.897 36 H 0.026 0.974 37 H 0.084 0.916 38 H 0.111 0.889 39 H 0.095 0.905 40 H 0.080 0.920 41 H 0.074 0.926 42 H 0.106 0.894 43 H 0.073 0.927 44 H 0.031 0.969 45 H 0.063 0.937 46 H 0.050 0.950 47 H 0.078 0.922 48 H 0.011 0.989 49 H 0.015 0.985 50 H 0.080 0.920 51 H 0.040 0.960 52 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.699 6.785 7.156 25.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.219 4.219 3 C 0.012 3.988 4 N -0.161 5.161 5 C -0.020 4.020 6 N -0.156 5.156 7 C -0.070 4.070 8 C -0.137 4.137 9 C 0.021 3.979 10 H 0.110 0.890 11 O -0.319 6.319 12 C -0.035 4.035 13 C -0.187 4.187 14 C -0.123 4.123 15 H 0.139 0.861 16 C -0.042 4.042 17 N -0.213 5.213 18 N -0.172 5.172 19 C -0.044 4.044 20 C 0.141 3.859 21 C -0.179 4.179 22 C -0.176 4.176 23 C -0.555 4.555 24 H 0.066 0.934 25 C -0.167 4.167 26 N -0.540 5.540 27 Si 0.773 3.227 28 H -0.207 1.207 29 H -0.200 1.200 30 H -0.207 1.207 31 H 0.134 0.866 32 H 0.141 0.859 33 H 0.112 0.888 34 H 0.136 0.864 35 H 0.121 0.879 36 H 0.044 0.956 37 H 0.102 0.898 38 H 0.130 0.870 39 H 0.114 0.886 40 H 0.098 0.902 41 H 0.092 0.908 42 H 0.124 0.876 43 H 0.092 0.908 44 H 0.049 0.951 45 H 0.081 0.919 46 H 0.069 0.931 47 H 0.097 0.903 48 H 0.030 0.970 49 H 0.035 0.965 50 H 0.099 0.901 51 H 0.059 0.941 52 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -22.922 6.662 7.882 25.138 hybrid contribution 1.497 -0.211 -0.196 1.524 sum -21.426 6.451 7.686 23.659 Atomic orbital electron populations 1.24082 0.94144 1.03845 0.94719 1.22953 0.97165 0.96802 1.04993 1.21327 0.91085 0.98690 0.87661 1.46367 1.09969 1.50486 1.09242 1.22724 0.92513 1.03256 0.83533 1.59140 1.20424 1.24001 1.12026 1.22127 0.98916 0.85179 1.00775 1.21030 0.94604 1.04286 0.93809 1.22539 0.96539 0.86269 0.92513 0.88961 1.88819 1.76281 1.45646 1.21126 1.23320 1.02491 0.93920 0.83742 1.23179 1.04332 0.95682 0.95474 1.22802 0.95156 0.99347 0.95010 0.86056 1.21926 0.97855 1.01155 0.83246 1.74430 0.96840 1.22378 1.27604 1.73951 1.23538 1.19122 1.00573 1.25824 0.81346 0.99244 0.97995 1.16812 0.91588 0.92878 0.84606 1.21841 0.98654 0.97107 1.00318 1.21748 0.98386 0.96485 1.00946 1.21151 0.96503 1.43237 0.94659 0.93411 1.25335 1.01051 0.95343 0.94989 1.69835 1.35968 1.47032 1.01125 0.85811 0.80974 0.78324 0.77638 1.20684 1.20002 1.20734 0.86598 0.85860 0.88812 0.86442 0.87866 0.95574 0.89787 0.87047 0.88613 0.90183 0.90786 0.87575 0.90850 0.95067 0.91855 0.93108 0.90305 0.96954 0.96529 0.90120 0.94132 0.92662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.26 14.32 67.78 0.97 -1.29 16 2 C -0.20 -5.06 8.82 25.65 0.23 -4.84 16 3 C 0.13 3.71 5.56 85.63 0.48 4.18 16 4 N -0.47 -17.70 2.79 -518.91 -1.45 -19.15 16 5 C 0.34 12.87 6.87 260.11 1.79 14.65 16 6 N -0.43 -12.06 4.70 -708.92 -3.33 -15.39 16 7 C 0.06 1.33 5.29 85.83 0.45 1.78 16 8 C -0.10 -1.49 5.71 29.64 0.17 -1.32 16 9 C 0.08 1.23 3.15 30.47 0.10 1.33 16 10 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 11 O -0.40 -8.43 11.08 -148.98 -1.65 -10.08 16 12 C 0.04 0.67 7.64 72.39 0.55 1.22 16 13 C -0.15 -2.08 6.37 31.88 0.20 -1.88 16 14 C -0.10 -1.74 3.72 -9.51 -0.04 -1.78 16 15 H 0.12 1.60 8.14 -2.39 -0.02 1.58 16 16 C 0.09 2.28 3.78 86.38 0.33 2.60 16 17 N -0.37 -17.44 11.44 -58.00 -0.66 -18.10 16 18 N -0.33 -17.80 11.00 -49.54 -0.54 -18.34 16 19 C 0.23 10.75 6.33 137.64 0.87 11.62 16 20 C 0.14 7.11 0.47 -53.67 -0.03 7.09 16 21 C -0.12 -5.52 7.44 71.98 0.54 -4.98 16 22 C -0.12 -5.40 8.06 71.98 0.58 -4.82 16 23 C -0.52 -29.39 7.91 25.60 0.20 -29.19 16 24 H 0.05 2.94 6.95 -2.91 -0.02 2.92 16 25 C 0.03 1.76 5.13 84.65 0.43 2.20 16 26 N -0.90 -48.21 9.39 21.44 0.20 -48.01 16 27 Si 0.95 45.01 29.54 68.60 2.03 47.03 16 28 H -0.28 -13.48 7.11 99.48 0.71 -12.78 16 29 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 30 H -0.28 -13.56 7.11 99.48 0.71 -12.85 16 31 H 0.12 1.69 8.06 -2.91 -0.02 1.67 16 32 H 0.12 1.51 7.84 -2.91 -0.02 1.48 16 33 H 0.09 2.86 6.93 -2.91 -0.02 2.84 16 34 H 0.12 2.48 5.97 -2.39 -0.01 2.47 16 35 H 0.10 2.99 4.54 -2.39 -0.01 2.98 16 36 H 0.03 0.76 8.07 -2.39 -0.02 0.74 16 37 H 0.08 1.82 6.29 -2.39 -0.02 1.81 16 38 H 0.11 1.16 8.14 -2.39 -0.02 1.15 16 39 H 0.10 1.22 8.14 -2.38 -0.02 1.20 16 40 H 0.08 0.93 8.14 -2.38 -0.02 0.91 16 41 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 42 H 0.11 0.93 8.14 -2.38 -0.02 0.91 16 43 H 0.07 1.18 7.79 -2.38 -0.02 1.17 16 44 H 0.03 0.99 7.78 -2.39 -0.02 0.97 16 45 H 0.06 1.90 8.07 -2.38 -0.02 1.88 16 46 H 0.05 1.93 4.54 -2.39 -0.01 1.92 16 47 H 0.08 3.93 5.93 -2.38 -0.01 3.91 16 48 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 49 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 50 H 0.08 3.95 6.24 -2.38 -0.01 3.94 16 51 H 0.04 1.55 5.69 -2.39 -0.01 1.53 16 52 H 0.26 13.53 8.31 -92.71 -0.77 12.76 16 Total: -1.00 -71.86 390.09 3.33 -68.52 By element: Atomic # 1 Polarization: 16.01 SS G_CDS: 0.92 Total: 16.93 kcal Atomic # 6 Polarization: -11.24 SS G_CDS: 7.83 Total: -3.42 kcal Atomic # 7 Polarization: -113.20 SS G_CDS: -5.79 Total: -118.99 kcal Atomic # 8 Polarization: -8.43 SS G_CDS: -1.65 Total: -10.08 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.03 kcal Total: -71.86 3.33 -68.52 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121561672.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.025 kcal (2) G-P(sol) polarization free energy of solvation -71.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.522 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.48 seconds