Wall clock time and date at job start Wed Apr 1 2020 05:05:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50697 * 120.00238 * 2 1 4 4 C 1.53118 * 109.52468 * 239.67985 * 3 2 1 5 5 C 1.53037 * 109.27945 * 182.43826 * 4 3 2 6 6 N 1.46857 * 109.52186 * 59.18207 * 5 4 3 7 7 C 1.38572 * 110.99665 * 174.16038 * 6 5 4 8 8 N 1.31211 * 126.47760 * 44.38759 * 7 6 5 9 9 N 1.28534 * 109.86403 * 179.81677 * 8 7 6 10 10 C 1.30297 * 110.04735 * 0.45342 * 9 8 7 11 11 C 1.50697 * 126.34268 * 179.75940 * 10 9 8 12 12 C 1.53002 * 109.47557 * 292.03947 * 11 10 9 13 13 H 1.09006 * 109.46937 * 52.02510 * 12 11 10 14 14 O 1.42897 * 109.47333 * 292.02858 * 12 11 10 15 15 C 1.50700 * 109.47321 * 172.02528 * 12 11 10 16 16 H 1.07996 * 119.99790 * 0.02562 * 15 12 11 17 17 C 1.37881 * 119.99607 * 180.02562 * 15 12 11 18 18 N 1.31516 * 120.00200 * 0.02562 * 17 15 12 19 19 Si 1.86802 * 119.99582 * 179.97438 * 17 15 12 20 20 H 1.48506 * 109.46691 * 60.00266 * 19 17 15 21 21 H 1.48497 * 109.46985 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.47420 * 300.00276 * 19 17 15 23 23 N 1.36458 * 126.46880 * 224.69607 * 7 6 5 24 24 C 1.46500 * 127.13856 * 0.02562 * 23 7 6 25 25 C 1.50709 * 109.47031 * 266.97072 * 24 23 7 26 26 C 1.31004 * 119.99577 * 110.71211 * 25 24 23 27 27 C 1.50692 * 119.99763 * 290.71329 * 25 24 23 28 28 C 1.46841 * 111.19610 * 298.25918 * 6 5 4 29 29 C 1.53044 * 109.52792 * 61.74209 * 28 6 5 30 30 H 1.07999 * 119.99598 * 359.97438 * 1 2 3 31 31 H 1.07997 * 120.00092 * 179.97438 * 1 2 3 32 32 H 1.08002 * 120.00084 * 180.02562 * 2 1 3 33 33 H 1.09001 * 109.57520 * 359.84478 * 3 2 1 34 34 H 1.09003 * 109.50248 * 62.50457 * 4 3 2 35 35 H 1.08992 * 109.50702 * 302.38423 * 4 3 2 36 36 H 1.08996 * 109.46371 * 299.16926 * 5 4 3 37 37 H 1.08997 * 109.46552 * 179.19655 * 5 4 3 38 38 H 1.09000 * 109.47208 * 52.03941 * 11 10 9 39 39 H 1.09004 * 109.47089 * 172.03992 * 11 10 9 40 40 H 0.96698 * 113.99677 * 303.38373 * 14 12 11 41 41 H 0.96998 * 119.99676 * 180.02562 * 18 17 15 42 42 H 1.08998 * 109.47396 * 26.96705 * 24 23 7 43 43 H 1.09000 * 109.47016 * 146.97207 * 24 23 7 44 44 H 1.07996 * 119.99277 * 187.01148 * 26 25 24 45 45 H 1.07997 * 120.00490 * 7.00989 * 26 25 24 46 46 H 1.09000 * 109.47567 * 359.97438 * 27 25 24 47 47 H 1.09003 * 109.47084 * 120.00183 * 27 25 24 48 48 H 1.09006 * 109.46877 * 239.99910 * 27 25 24 49 49 H 1.09001 * 109.46370 * 181.75583 * 28 6 5 50 50 H 1.08996 * 109.46294 * 301.72303 * 28 6 5 51 51 H 1.08997 * 109.49709 * 60.75846 * 29 28 6 52 52 H 1.08995 * 109.50394 * 180.87599 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 2.9503 1.3839 -1.2457 5 6 3.7582 2.6832 -1.2094 6 7 4.5845 2.7135 0.0042 7 6 5.4259 3.8145 0.0047 8 7 5.1018 5.0441 -0.3189 9 7 6.1266 5.8111 -0.2020 10 6 7.1591 5.1201 0.1905 11 6 8.5473 5.6515 0.4388 12 6 9.1728 6.0842 -0.8888 13 1 8.4920 6.7583 -1.4086 14 8 9.4140 4.9325 -1.6995 15 6 10.4758 6.7930 -0.6228 16 1 10.8233 6.9216 0.3917 17 6 11.2244 7.2773 -1.6746 18 7 10.8010 7.1211 -2.9099 19 14 12.8392 8.1566 -1.3448 20 1 13.7671 7.2383 -0.6368 21 1 13.4457 8.5775 -2.6332 22 1 12.5882 9.3533 -0.5021 23 7 6.7496 3.8237 0.3362 24 6 7.5632 2.6814 0.7597 25 6 7.5614 2.5937 2.2643 26 6 6.9399 1.6076 2.8621 27 6 8.2745 3.6405 3.0808 28 6 3.7524 2.6865 1.2138 29 6 2.9443 1.3873 1.2499 30 1 -0.5399 0.9353 0.0004 31 1 -0.5400 -0.9353 -0.0004 32 1 1.8500 -0.9353 -0.0004 33 1 1.3567 2.1348 -0.0028 34 1 2.3255 1.3689 -2.1388 35 1 3.6307 0.5326 -1.2626 36 1 3.0773 3.5343 -1.2065 37 1 4.4013 2.7357 -2.0879 38 1 8.4937 6.5077 1.1113 39 1 9.1593 4.8715 0.8917 40 1 9.9712 4.2642 -1.2777 41 1 11.3278 7.4615 -3.6498 42 1 7.1476 1.7644 0.3419 43 1 8.5854 2.8119 0.4046 44 1 6.8412 1.6046 3.9376 45 1 6.5263 0.7977 2.2796 46 1 8.7289 4.3738 2.4145 47 1 7.5603 4.1384 3.7367 48 1 9.0503 3.1661 3.6818 49 1 4.3911 2.7414 2.0954 50 1 3.0715 3.5376 1.2054 51 1 3.6247 0.5361 1.2723 52 1 2.3152 1.3746 2.1399 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001122471687.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:05:05 Heat of formation + Delta-G solvation = 65.898795 kcal Electronic energy + Delta-G solvation = -31676.905825 eV Core-core repulsion = 27678.635293 eV Total energy + Delta-G solvation = -3998.270532 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.59698 -39.36275 -36.89892 -36.12646 -35.48581 -33.20616 -32.17399 -32.00906 -31.13250 -30.72937 -27.85342 -27.60320 -26.77638 -25.36651 -24.61512 -23.38156 -21.89719 -21.14288 -20.43138 -20.08529 -19.64782 -18.72706 -17.39383 -16.92494 -16.32614 -16.06122 -15.33480 -15.04415 -14.67036 -14.63224 -14.61470 -14.42420 -14.25584 -13.97392 -13.74720 -13.65562 -13.34271 -13.17247 -13.07831 -12.68506 -12.48692 -12.19292 -12.05650 -11.95106 -11.62712 -11.45030 -11.32317 -11.12888 -11.04217 -11.03992 -10.94779 -10.79871 -10.79344 -10.58381 -10.12993 -10.11308 -9.77990 -9.59030 -9.34473 -9.29605 -8.87550 -8.58743 -8.47797 -8.04578 -6.01863 -4.21850 1.75342 1.98010 2.14942 2.70178 3.28228 3.31851 3.34360 3.36094 3.80666 4.36951 4.37412 4.49978 4.56387 4.63240 4.68387 4.92221 4.93432 5.01145 5.04307 5.08740 5.19488 5.24156 5.31114 5.34044 5.39920 5.42260 5.46396 5.52036 5.56859 5.59360 5.65884 5.68501 5.71055 5.78674 5.85077 5.88919 5.92504 6.08791 6.13339 6.26794 6.30258 6.33234 6.35205 6.40152 6.49559 6.63425 6.66543 6.72190 6.95162 7.50965 7.69631 7.81528 8.11057 8.79024 9.21975 9.30052 9.54391 11.02301 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.018279 B = 0.002669 C = 0.002462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1531.426896 B =10489.115695 C =11372.165608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.143 4.143 3 C -0.066 4.066 4 C -0.106 4.106 5 C 0.069 3.931 6 N -0.456 5.456 7 C 0.325 3.675 8 N -0.314 5.314 9 N -0.293 5.293 10 C 0.224 3.776 11 C -0.066 4.066 12 C 0.238 3.762 13 H 0.069 0.931 14 O -0.561 6.561 15 C -0.575 4.575 16 H 0.058 0.942 17 C 0.081 3.919 18 N -0.855 5.855 19 Si 0.891 3.109 20 H -0.276 1.276 21 H -0.287 1.287 22 H -0.275 1.275 23 N -0.458 5.458 24 C 0.148 3.852 25 C -0.143 4.143 26 C -0.170 4.170 27 C -0.133 4.133 28 C 0.066 3.934 29 C -0.103 4.103 30 H 0.095 0.905 31 H 0.096 0.904 32 H 0.108 0.892 33 H 0.074 0.926 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.055 0.945 37 H 0.080 0.920 38 H 0.094 0.906 39 H 0.074 0.926 40 H 0.338 0.662 41 H 0.262 0.738 42 H 0.103 0.897 43 H 0.102 0.898 44 H 0.101 0.899 45 H 0.102 0.898 46 H 0.076 0.924 47 H 0.064 0.936 48 H 0.070 0.930 49 H 0.076 0.924 50 H 0.047 0.953 51 H 0.074 0.926 52 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.201 -17.056 10.783 24.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.161 4.161 3 C -0.084 4.084 4 C -0.143 4.143 5 C -0.058 4.058 6 N -0.182 5.182 7 C -0.031 4.031 8 N -0.158 5.158 9 N -0.133 5.133 10 C -0.043 4.043 11 C -0.106 4.106 12 C 0.180 3.820 13 H 0.087 0.913 14 O -0.363 6.363 15 C -0.613 4.613 16 H 0.076 0.924 17 C -0.126 4.126 18 N -0.490 5.490 19 Si 0.718 3.282 20 H -0.202 1.202 21 H -0.212 1.212 22 H -0.200 1.200 23 N -0.151 5.151 24 C 0.025 3.975 25 C -0.144 4.144 26 C -0.208 4.208 27 C -0.189 4.189 28 C -0.062 4.062 29 C -0.141 4.141 30 H 0.113 0.887 31 H 0.114 0.886 32 H 0.126 0.874 33 H 0.092 0.908 34 H 0.092 0.908 35 H 0.092 0.908 36 H 0.073 0.927 37 H 0.098 0.902 38 H 0.112 0.888 39 H 0.092 0.908 40 H 0.181 0.819 41 H 0.072 0.928 42 H 0.121 0.879 43 H 0.120 0.880 44 H 0.119 0.881 45 H 0.120 0.880 46 H 0.095 0.905 47 H 0.083 0.917 48 H 0.089 0.911 49 H 0.094 0.906 50 H 0.065 0.935 51 H 0.092 0.908 52 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -15.116 -15.916 9.696 23.997 hybrid contribution 1.570 -0.328 0.958 1.869 sum -13.546 -16.245 10.655 23.684 Atomic orbital electron populations 1.23856 0.95991 1.01766 1.01650 1.22928 0.95795 0.98100 0.99240 1.20460 0.96811 0.95655 0.95489 1.21622 0.97668 0.97682 0.97374 1.22081 0.95328 0.97706 0.90698 1.58503 1.20887 1.34440 1.04386 1.22118 0.84244 0.91706 1.05059 1.74503 1.22071 0.98564 1.20628 1.74040 0.95719 1.25205 1.18293 1.25300 0.99350 0.79704 0.99939 1.21364 0.84819 1.00440 1.04000 1.19442 0.94473 0.84422 0.83674 0.91334 1.86683 1.71665 1.31202 1.46751 1.21520 1.06651 1.39919 0.93162 0.92415 1.25034 0.97768 0.94762 0.95026 1.70076 1.37663 1.42999 0.98270 0.86709 0.83700 0.80213 0.77574 1.20163 1.21214 1.20046 1.46216 1.08533 1.09489 1.50817 1.20747 0.96604 0.88206 0.91950 1.21955 0.99660 0.98041 0.94717 1.23758 0.98526 0.97769 1.00722 1.21066 0.99958 0.97995 0.99895 1.22148 0.95010 0.97809 0.91216 1.21590 0.97668 0.97482 0.97387 0.88653 0.88613 0.87366 0.90772 0.90813 0.90804 0.92708 0.90167 0.88768 0.90752 0.81896 0.92838 0.87921 0.88026 0.88102 0.87966 0.90517 0.91743 0.91086 0.90569 0.93481 0.90768 0.91021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.31 14.32 29.02 0.42 -0.89 16 2 C -0.14 -1.01 8.78 -36.03 -0.32 -1.33 16 3 C -0.07 -0.53 2.54 -91.65 -0.23 -0.76 16 4 C -0.11 -0.94 5.36 -26.65 -0.14 -1.08 16 5 C 0.07 0.84 5.19 -3.83 -0.02 0.82 16 6 N -0.46 -5.89 4.67 -174.55 -0.82 -6.71 16 7 C 0.32 5.47 6.60 -318.89 -2.11 3.37 16 8 N -0.31 -6.39 11.87 30.31 0.36 -6.03 16 9 N -0.29 -6.53 12.18 32.99 0.40 -6.13 16 10 C 0.22 4.41 7.10 -154.02 -1.09 3.32 16 11 C -0.07 -1.30 4.33 -27.88 -0.12 -1.42 16 12 C 0.24 5.93 2.79 -27.88 -0.08 5.85 16 13 H 0.07 1.99 8.13 -51.93 -0.42 1.57 16 14 O -0.56 -14.09 12.56 -35.23 -0.44 -14.53 16 15 C -0.57 -15.21 8.77 -34.44 -0.30 -15.51 16 16 H 0.06 1.45 7.74 -52.49 -0.41 1.04 16 17 C 0.08 2.23 5.40 -17.82 -0.10 2.14 16 18 N -0.86 -25.25 12.84 55.43 0.71 -24.54 16 19 Si 0.89 20.79 29.54 -169.99 -5.02 15.77 16 20 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 21 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 22 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 23 N -0.46 -7.52 2.79 -115.37 -0.32 -7.85 16 24 C 0.15 1.87 5.93 -5.19 -0.03 1.84 16 25 C -0.14 -1.56 5.64 -101.07 -0.57 -2.13 16 26 C -0.17 -1.53 13.92 29.01 0.40 -1.12 16 27 C -0.13 -1.46 10.05 36.00 0.36 -1.10 16 28 C 0.07 0.72 5.39 -3.83 -0.02 0.70 16 29 C -0.10 -0.84 5.36 -26.64 -0.14 -0.98 16 30 H 0.10 0.63 7.84 -52.49 -0.41 0.21 16 31 H 0.10 0.54 8.06 -52.49 -0.42 0.12 16 32 H 0.11 0.69 8.06 -52.49 -0.42 0.27 16 33 H 0.07 0.63 7.79 -51.93 -0.40 0.23 16 34 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.05 0.72 8.08 -51.93 -0.42 0.30 16 37 H 0.08 1.09 8.10 -51.93 -0.42 0.66 16 38 H 0.09 1.82 8.13 -51.93 -0.42 1.40 16 39 H 0.07 1.26 5.04 -51.93 -0.26 0.99 16 40 H 0.34 7.20 9.03 45.56 0.41 7.61 16 41 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 42 H 0.10 1.18 7.81 -51.93 -0.41 0.77 16 43 H 0.10 1.28 7.51 -51.93 -0.39 0.89 16 44 H 0.10 0.80 8.05 -52.49 -0.42 0.37 16 45 H 0.10 0.83 7.85 -52.49 -0.41 0.42 16 46 H 0.08 0.97 4.48 -51.93 -0.23 0.73 16 47 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 48 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 49 H 0.08 0.86 8.07 -51.93 -0.42 0.44 16 50 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 51 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 52 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 LS Contribution 420.32 15.07 6.33 6.33 Total: -1.00 -32.84 420.32 -10.86 -43.71 By element: Atomic # 1 Polarization: 16.24 SS G_CDS: -7.98 Total: 8.26 kcal Atomic # 6 Polarization: -4.20 SS G_CDS: -4.09 Total: -8.29 kcal Atomic # 7 Polarization: -51.59 SS G_CDS: 0.34 Total: -51.26 kcal Atomic # 8 Polarization: -14.09 SS G_CDS: -0.44 Total: -14.53 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 6.33 Total: 6.33 kcal Total: -32.84 -10.86 -43.71 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001122471687.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.607 kcal (2) G-P(sol) polarization free energy of solvation -32.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.708 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds