Wall clock time and date at job start Wed Apr 1 2020 05:05:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50697 * 120.00238 * 2 1 4 4 C 1.53118 * 109.52468 * 239.67985 * 3 2 1 5 5 C 1.53037 * 109.27945 * 182.43826 * 4 3 2 6 6 N 1.46857 * 109.52186 * 59.18207 * 5 4 3 7 7 C 1.38572 * 110.99665 * 174.16038 * 6 5 4 8 8 N 1.31211 * 126.47760 * 44.38759 * 7 6 5 9 9 N 1.28534 * 109.86403 * 179.81677 * 8 7 6 10 10 C 1.30297 * 110.04735 * 0.45342 * 9 8 7 11 11 C 1.50697 * 126.34268 * 179.75940 * 10 9 8 12 12 C 1.53002 * 109.47557 * 292.03947 * 11 10 9 13 13 H 1.09006 * 109.46937 * 52.02510 * 12 11 10 14 14 O 1.42897 * 109.47333 * 292.02858 * 12 11 10 15 15 C 1.50700 * 109.47321 * 172.02528 * 12 11 10 16 16 H 1.07996 * 119.99790 * 0.02562 * 15 12 11 17 17 C 1.37881 * 119.99607 * 180.02562 * 15 12 11 18 18 N 1.31516 * 120.00200 * 0.02562 * 17 15 12 19 19 Si 1.86802 * 119.99582 * 179.97438 * 17 15 12 20 20 H 1.48506 * 109.46691 * 60.00266 * 19 17 15 21 21 H 1.48497 * 109.46985 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.47420 * 300.00276 * 19 17 15 23 23 N 1.36458 * 126.46880 * 224.69607 * 7 6 5 24 24 C 1.46500 * 127.13856 * 0.02562 * 23 7 6 25 25 C 1.50709 * 109.47031 * 266.97072 * 24 23 7 26 26 C 1.31004 * 119.99577 * 110.71211 * 25 24 23 27 27 C 1.50692 * 119.99763 * 290.71329 * 25 24 23 28 28 C 1.46841 * 111.19610 * 298.25918 * 6 5 4 29 29 C 1.53044 * 109.52792 * 61.74209 * 28 6 5 30 30 H 1.07999 * 119.99598 * 359.97438 * 1 2 3 31 31 H 1.07997 * 120.00092 * 179.97438 * 1 2 3 32 32 H 1.08002 * 120.00084 * 180.02562 * 2 1 3 33 33 H 1.09001 * 109.57520 * 359.84478 * 3 2 1 34 34 H 1.09003 * 109.50248 * 62.50457 * 4 3 2 35 35 H 1.08992 * 109.50702 * 302.38423 * 4 3 2 36 36 H 1.08996 * 109.46371 * 299.16926 * 5 4 3 37 37 H 1.08997 * 109.46552 * 179.19655 * 5 4 3 38 38 H 1.09000 * 109.47208 * 52.03941 * 11 10 9 39 39 H 1.09004 * 109.47089 * 172.03992 * 11 10 9 40 40 H 0.96698 * 113.99677 * 303.38373 * 14 12 11 41 41 H 0.96998 * 119.99676 * 180.02562 * 18 17 15 42 42 H 1.08998 * 109.47396 * 26.96705 * 24 23 7 43 43 H 1.09000 * 109.47016 * 146.97207 * 24 23 7 44 44 H 1.07996 * 119.99277 * 187.01148 * 26 25 24 45 45 H 1.07997 * 120.00490 * 7.00989 * 26 25 24 46 46 H 1.09000 * 109.47567 * 359.97438 * 27 25 24 47 47 H 1.09003 * 109.47084 * 120.00183 * 27 25 24 48 48 H 1.09006 * 109.46877 * 239.99910 * 27 25 24 49 49 H 1.09001 * 109.46370 * 181.75583 * 28 6 5 50 50 H 1.08996 * 109.46294 * 301.72303 * 28 6 5 51 51 H 1.08997 * 109.49709 * 60.75846 * 29 28 6 52 52 H 1.08995 * 109.50394 * 180.87599 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 2.9503 1.3839 -1.2457 5 6 3.7582 2.6832 -1.2094 6 7 4.5845 2.7135 0.0042 7 6 5.4259 3.8145 0.0047 8 7 5.1018 5.0441 -0.3189 9 7 6.1266 5.8111 -0.2020 10 6 7.1591 5.1201 0.1905 11 6 8.5473 5.6515 0.4388 12 6 9.1728 6.0842 -0.8888 13 1 8.4920 6.7583 -1.4086 14 8 9.4140 4.9325 -1.6995 15 6 10.4758 6.7930 -0.6228 16 1 10.8233 6.9216 0.3917 17 6 11.2244 7.2773 -1.6746 18 7 10.8010 7.1211 -2.9099 19 14 12.8392 8.1566 -1.3448 20 1 13.7671 7.2383 -0.6368 21 1 13.4457 8.5775 -2.6332 22 1 12.5882 9.3533 -0.5021 23 7 6.7496 3.8237 0.3362 24 6 7.5632 2.6814 0.7597 25 6 7.5614 2.5937 2.2643 26 6 6.9399 1.6076 2.8621 27 6 8.2745 3.6405 3.0808 28 6 3.7524 2.6865 1.2138 29 6 2.9443 1.3873 1.2499 30 1 -0.5399 0.9353 0.0004 31 1 -0.5400 -0.9353 -0.0004 32 1 1.8500 -0.9353 -0.0004 33 1 1.3567 2.1348 -0.0028 34 1 2.3255 1.3689 -2.1388 35 1 3.6307 0.5326 -1.2626 36 1 3.0773 3.5343 -1.2065 37 1 4.4013 2.7357 -2.0879 38 1 8.4937 6.5077 1.1113 39 1 9.1593 4.8715 0.8917 40 1 9.9712 4.2642 -1.2777 41 1 11.3278 7.4615 -3.6498 42 1 7.1476 1.7644 0.3419 43 1 8.5854 2.8119 0.4046 44 1 6.8412 1.6046 3.9376 45 1 6.5263 0.7977 2.2796 46 1 8.7289 4.3738 2.4145 47 1 7.5603 4.1384 3.7367 48 1 9.0503 3.1661 3.6818 49 1 4.3911 2.7414 2.0954 50 1 3.0715 3.5376 1.2054 51 1 3.6247 0.5361 1.2723 52 1 2.3152 1.3746 2.1399 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001122471687.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:05:04 Heat of formation + Delta-G solvation = 46.755533 kcal Electronic energy + Delta-G solvation = -31677.735939 eV Core-core repulsion = 27678.635293 eV Total energy + Delta-G solvation = -3999.100646 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -44.01533 -40.27537 -38.19830 -37.69807 -36.37832 -34.40313 -34.25068 -33.27213 -31.98519 -31.87674 -29.44696 -28.57416 -27.76326 -27.15845 -25.59059 -24.24719 -23.65586 -22.31930 -21.84333 -20.72190 -20.58256 -19.74113 -19.07094 -18.33645 -17.56315 -17.29467 -16.65217 -16.36287 -16.16498 -15.96058 -15.68176 -15.49401 -15.27795 -15.16706 -14.92806 -14.80535 -14.48123 -14.38469 -14.13956 -13.81738 -13.36447 -13.29677 -13.23531 -13.03077 -12.88382 -12.75854 -12.72606 -12.60233 -12.48283 -12.23023 -12.22427 -12.03491 -11.81474 -11.72652 -11.47678 -11.30082 -11.26555 -10.95511 -10.68130 -10.49738 -10.15400 -10.10247 -10.04793 -9.62334 -8.11660 -6.38664 0.72647 0.88451 1.43359 1.46148 1.46868 1.53591 1.58845 1.80748 2.41216 2.70382 3.14636 3.45857 3.60281 3.68134 3.70844 3.76818 3.88539 3.96741 4.10243 4.15668 4.20194 4.25925 4.34142 4.34585 4.48239 4.50819 4.52404 4.54960 4.63458 4.68768 4.75747 4.77402 4.78496 4.85859 4.88205 4.93536 4.98492 5.00442 5.08653 5.14546 5.18320 5.19547 5.42444 5.56170 5.59417 5.62335 5.71385 5.72868 5.81543 5.82233 5.97373 6.04222 6.24910 6.72735 7.33628 7.52771 7.74452 8.93198 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.018279 B = 0.002669 C = 0.002462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1531.426896 B =10489.115695 C =11372.165608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.146 4.146 3 C -0.063 4.063 4 C -0.095 4.095 5 C 0.069 3.931 6 N -0.445 5.445 7 C 0.341 3.659 8 N -0.355 5.355 9 N -0.340 5.340 10 C 0.214 3.786 11 C -0.046 4.046 12 C 0.243 3.757 13 H 0.013 0.987 14 O -0.579 6.579 15 C -0.581 4.581 16 H 0.073 0.927 17 C 0.023 3.977 18 N -0.902 5.902 19 Si 0.963 3.037 20 H -0.260 1.260 21 H -0.290 1.290 22 H -0.269 1.269 23 N -0.450 5.450 24 C 0.142 3.858 25 C -0.167 4.167 26 C -0.141 4.141 27 C -0.129 4.129 28 C 0.067 3.933 29 C -0.093 4.093 30 H 0.093 0.907 31 H 0.108 0.892 32 H 0.121 0.879 33 H 0.066 0.934 34 H 0.082 0.918 35 H 0.083 0.917 36 H 0.037 0.963 37 H 0.060 0.940 38 H 0.094 0.906 39 H 0.105 0.895 40 H 0.355 0.645 41 H 0.260 0.740 42 H 0.118 0.882 43 H 0.101 0.899 44 H 0.118 0.882 45 H 0.116 0.884 46 H 0.056 0.944 47 H 0.060 0.940 48 H 0.087 0.913 49 H 0.077 0.923 50 H 0.030 0.970 51 H 0.087 0.913 52 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.096 -20.082 13.137 27.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.164 4.164 3 C -0.081 4.081 4 C -0.132 4.132 5 C -0.059 4.059 6 N -0.171 5.171 7 C -0.017 4.017 8 N -0.198 5.198 9 N -0.180 5.180 10 C -0.055 4.055 11 C -0.086 4.086 12 C 0.184 3.816 13 H 0.031 0.969 14 O -0.383 6.383 15 C -0.619 4.619 16 H 0.091 0.909 17 C -0.179 4.179 18 N -0.539 5.539 19 Si 0.788 3.212 20 H -0.184 1.184 21 H -0.216 1.216 22 H -0.194 1.194 23 N -0.142 5.142 24 C 0.021 3.979 25 C -0.168 4.168 26 C -0.179 4.179 27 C -0.186 4.186 28 C -0.060 4.060 29 C -0.131 4.131 30 H 0.111 0.889 31 H 0.126 0.874 32 H 0.138 0.862 33 H 0.084 0.916 34 H 0.101 0.899 35 H 0.102 0.898 36 H 0.056 0.944 37 H 0.079 0.921 38 H 0.112 0.888 39 H 0.123 0.877 40 H 0.200 0.800 41 H 0.069 0.931 42 H 0.136 0.864 43 H 0.119 0.881 44 H 0.136 0.864 45 H 0.134 0.866 46 H 0.075 0.925 47 H 0.079 0.921 48 H 0.106 0.894 49 H 0.095 0.905 50 H 0.048 0.952 51 H 0.106 0.894 52 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -15.006 -18.970 12.088 27.039 hybrid contribution 1.414 0.507 0.237 1.520 sum -13.592 -18.463 12.325 26.029 Atomic orbital electron populations 1.24004 0.96064 1.02309 1.00794 1.22884 0.95831 0.97719 0.99948 1.20410 0.96567 0.96277 0.94879 1.21569 0.97544 0.95646 0.98478 1.22116 0.94821 0.99234 0.89694 1.58838 1.20987 1.31738 1.05542 1.22584 0.84952 0.91762 1.02357 1.74398 1.22276 1.00186 1.22945 1.73920 0.97014 1.27217 1.19802 1.25092 0.98805 0.81066 1.00492 1.21018 0.85151 1.01440 1.00966 1.19111 0.93365 0.83902 0.85203 0.96892 1.86607 1.72307 1.31640 1.47734 1.21956 1.06894 1.39275 0.93754 0.90921 1.25973 1.01663 0.95612 0.94695 1.70250 1.39400 1.44889 0.99394 0.85559 0.79206 0.79195 0.77287 1.18443 1.21586 1.19363 1.46380 1.08549 1.09338 1.49915 1.21057 0.96030 0.87139 0.93697 1.21798 1.02218 0.99492 0.93324 1.24009 0.95508 0.96599 1.01763 1.21017 1.00281 0.97699 0.99593 1.22240 0.94636 0.99098 0.90038 1.21564 0.97578 0.95828 0.98084 0.88913 0.87392 0.86156 0.91602 0.89931 0.89833 0.94429 0.92129 0.88805 0.87703 0.79964 0.93122 0.86407 0.88131 0.86430 0.86561 0.92549 0.92137 0.89413 0.90491 0.95199 0.89443 0.89379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.10 14.32 67.78 0.97 -1.13 16 2 C -0.15 -1.62 8.78 25.65 0.23 -1.40 16 3 C -0.06 -0.87 2.54 -11.46 -0.03 -0.90 16 4 C -0.09 -1.52 5.36 30.65 0.16 -1.36 16 5 C 0.07 1.67 5.19 86.32 0.45 2.12 16 6 N -0.44 -11.20 4.67 -706.15 -3.30 -14.49 16 7 C 0.34 11.67 6.60 260.12 1.72 13.39 16 8 N -0.35 -15.18 11.87 -58.01 -0.69 -15.87 16 9 N -0.34 -16.03 12.18 -49.54 -0.60 -16.63 16 10 C 0.21 8.73 7.10 137.64 0.98 9.70 16 11 C -0.05 -1.84 4.33 29.85 0.13 -1.71 16 12 C 0.24 12.53 2.79 29.85 0.08 12.62 16 13 H 0.01 0.82 8.13 -2.38 -0.02 0.80 16 14 O -0.58 -29.92 12.56 -148.98 -1.87 -31.79 16 15 C -0.58 -31.10 8.77 25.60 0.22 -30.87 16 16 H 0.07 3.59 7.74 -2.91 -0.02 3.57 16 17 C 0.02 1.28 5.40 84.66 0.46 1.73 16 18 N -0.90 -55.00 12.84 21.45 0.28 -54.73 16 19 Si 0.96 42.87 29.54 68.60 2.03 44.89 16 20 H -0.26 -10.82 7.11 99.48 0.71 -10.11 16 21 H -0.29 -12.96 7.11 99.48 0.71 -12.26 16 22 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 23 N -0.45 -14.84 2.79 -518.91 -1.45 -16.28 16 24 C 0.14 3.38 5.93 85.64 0.51 3.89 16 25 C -0.17 -3.25 5.64 -16.49 -0.09 -3.34 16 26 C -0.14 -1.99 13.92 67.78 0.94 -1.05 16 27 C -0.13 -2.62 10.05 71.23 0.72 -1.90 16 28 C 0.07 1.37 5.39 86.33 0.47 1.83 16 29 C -0.09 -1.23 5.36 30.65 0.16 -1.07 16 30 H 0.09 1.04 7.84 -2.91 -0.02 1.02 16 31 H 0.11 0.91 8.06 -2.91 -0.02 0.89 16 32 H 0.12 1.09 8.06 -2.91 -0.02 1.06 16 33 H 0.07 1.04 7.79 -2.39 -0.02 1.02 16 34 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 35 H 0.08 1.22 8.14 -2.39 -0.02 1.21 16 36 H 0.04 1.04 8.08 -2.39 -0.02 1.02 16 37 H 0.06 1.70 8.10 -2.39 -0.02 1.68 16 38 H 0.09 3.72 8.13 -2.39 -0.02 3.70 16 39 H 0.10 3.50 5.04 -2.38 -0.01 3.48 16 40 H 0.36 15.24 9.03 -74.06 -0.67 14.57 16 41 H 0.26 15.08 8.31 -92.71 -0.77 14.31 16 42 H 0.12 2.43 7.81 -2.39 -0.02 2.41 16 43 H 0.10 2.41 7.51 -2.39 -0.02 2.39 16 44 H 0.12 1.33 8.05 -2.91 -0.02 1.31 16 45 H 0.12 1.35 7.85 -2.91 -0.02 1.32 16 46 H 0.06 1.35 4.48 -2.39 -0.01 1.34 16 47 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 48 H 0.09 1.42 8.14 -2.38 -0.02 1.40 16 49 H 0.08 1.58 8.07 -2.39 -0.02 1.56 16 50 H 0.03 0.72 8.14 -2.39 -0.02 0.70 16 51 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 52 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 Total: -1.00 -75.22 420.32 2.70 -72.52 By element: Atomic # 1 Polarization: 31.59 SS G_CDS: 0.23 Total: 31.82 kcal Atomic # 6 Polarization: -7.51 SS G_CDS: 8.07 Total: 0.56 kcal Atomic # 7 Polarization: -112.24 SS G_CDS: -5.76 Total: -118.00 kcal Atomic # 8 Polarization: -29.92 SS G_CDS: -1.87 Total: -31.79 kcal Atomic # 14 Polarization: 42.87 SS G_CDS: 2.03 Total: 44.89 kcal Total: -75.22 2.70 -72.52 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001122471687.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.275 kcal (2) G-P(sol) polarization free energy of solvation -75.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.520 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds