Wall clock time and date at job start Wed Apr 1 2020 05:18:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50709 * 120.00133 * 2 1 4 4 C 1.50700 * 119.99966 * 180.02562 * 2 1 3 5 5 N 1.46503 * 109.46990 * 94.32781 * 4 2 1 6 6 C 1.36741 * 127.13713 * 96.29186 * 5 4 2 7 7 C 1.50702 * 126.34709 * 359.95669 * 6 5 4 8 8 C 1.52996 * 109.47155 * 263.77343 * 7 6 5 9 9 C 1.53002 * 109.47085 * 183.75203 * 8 7 6 10 10 C 1.50703 * 109.47122 * 180.02562 * 9 8 7 11 11 H 1.07998 * 120.00093 * 359.97438 * 10 9 8 12 12 C 1.37877 * 120.00157 * 180.02562 * 10 9 8 13 13 N 1.31516 * 119.99682 * 0.02562 * 12 10 9 14 14 Si 1.86793 * 120.00308 * 179.97438 * 12 10 9 15 15 H 1.48504 * 109.47079 * 60.00061 * 14 12 10 16 16 H 1.48498 * 109.47566 * 180.02562 * 14 12 10 17 17 H 1.48501 * 109.47056 * 300.00081 * 14 12 10 18 18 N 1.30295 * 107.30280 * 180.22521 * 6 5 4 19 19 N 1.28526 * 110.05793 * 359.77040 * 18 6 5 20 20 C 1.31220 * 109.85577 * 359.97438 * 19 18 6 21 21 N 1.38584 * 126.47084 * 179.97438 * 20 19 18 22 22 C 1.47049 * 110.99933 * 106.40964 * 21 20 19 23 23 C 1.55011 * 108.79653 * 181.56614 * 22 21 20 24 24 H 1.09001 * 112.14934 * 186.24441 * 23 22 21 25 25 C 1.54716 * 108.45152 * 311.29061 * 23 22 21 26 26 C 1.54555 * 103.81759 * 87.79235 * 25 23 22 27 27 C 1.54710 * 103.82232 * 359.97438 * 26 25 23 28 28 H 1.09005 * 112.15701 * 147.18450 * 27 26 25 29 29 C 1.47047 * 110.99927 * 342.14733 * 21 20 19 30 30 O 1.44645 * 104.34349 * 25.53492 * 27 26 25 31 31 H 1.08000 * 119.99449 * 359.97438 * 1 2 3 32 32 H 1.08001 * 119.99774 * 180.02562 * 1 2 3 33 33 H 1.08995 * 109.46805 * 269.96020 * 3 2 1 34 34 H 1.08994 * 109.46679 * 29.96055 * 3 2 1 35 35 H 1.08997 * 109.46858 * 149.96011 * 3 2 1 36 36 H 1.08992 * 109.47186 * 334.32720 * 4 2 1 37 37 H 1.09002 * 109.47236 * 214.32271 * 4 2 1 38 38 H 1.09003 * 109.47079 * 23.77278 * 7 6 5 39 39 H 1.08996 * 109.47138 * 143.77473 * 7 6 5 40 40 H 1.09002 * 109.47605 * 303.75607 * 8 7 6 41 41 H 1.09004 * 109.47109 * 63.75578 * 8 7 6 42 42 H 1.08993 * 109.47383 * 300.00419 * 9 8 7 43 43 H 1.09004 * 109.46841 * 60.00211 * 9 8 7 44 44 H 0.96996 * 119.99833 * 179.97438 * 13 12 10 45 45 H 1.09000 * 109.56696 * 301.61617 * 22 21 20 46 46 H 1.09004 * 109.56839 * 61.85124 * 22 21 20 47 47 H 1.09003 * 110.55627 * 206.37516 * 25 23 22 48 48 H 1.08998 * 110.55523 * 329.20991 * 25 23 22 49 49 H 1.08996 * 110.55580 * 241.40937 * 26 25 23 50 50 H 1.09005 * 110.55172 * 118.58647 * 26 25 23 51 51 H 1.08999 * 109.56796 * 58.38979 * 29 21 20 52 52 H 1.08999 * 109.57247 * 298.03015 * 29 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3052 0.0000 4 6 2.0635 -1.3051 -0.0006 5 7 2.3979 -1.6753 -1.3781 6 6 3.5758 -1.4427 -2.0326 7 6 4.7890 -0.7490 -1.4688 8 6 4.7687 0.7256 -1.8762 9 6 6.0462 1.4084 -1.3837 10 6 6.0259 2.8610 -1.7844 11 1 5.1861 3.2574 -2.3357 12 6 7.0800 3.6838 -1.4483 13 7 8.1034 3.2007 -0.7782 14 14 7.0552 5.4841 -1.9456 15 1 5.8738 6.1489 -1.3393 16 1 8.2956 6.1466 -1.4685 17 1 6.9768 5.5879 -3.4249 18 7 3.4526 -1.9270 -3.2359 19 7 2.2878 -2.4499 -3.3835 20 6 1.6000 -2.3267 -2.2729 21 7 0.3051 -2.7688 -2.0525 22 6 0.2944 -3.9587 -1.1886 23 6 -1.1706 -4.4320 -1.0085 24 1 -1.2538 -5.2468 -0.2892 25 6 -2.0370 -3.2086 -0.6260 26 6 -2.4615 -2.6162 -1.9890 27 6 -1.7976 -3.5560 -3.0233 28 1 -2.3969 -3.6607 -3.9278 29 6 -0.3870 -3.0273 -3.3239 30 8 -1.6454 -4.8113 -2.3210 31 1 -0.5399 0.9354 0.0004 32 1 -0.5400 -0.9353 0.0004 33 1 2.2458 1.6194 -1.0276 34 1 1.4742 2.0649 0.5132 35 1 3.0156 1.1749 0.5144 36 1 1.4431 -2.0830 0.4442 37 1 2.9802 -1.1957 0.5789 38 1 4.7790 -0.8257 -0.3815 39 1 5.6911 -1.2211 -1.8580 40 1 4.7114 0.8018 -2.9621 41 1 3.9013 1.2135 -1.4315 42 1 6.1035 1.3322 -0.2979 43 1 6.9136 0.9205 -1.8284 44 1 8.8452 3.7793 -0.5420 45 1 0.8841 -4.7506 -1.6506 46 1 0.7184 -3.7078 -0.2163 47 1 -2.9115 -3.5220 -0.0559 48 1 -1.4494 -2.4853 -0.0607 49 1 -2.0842 -1.5995 -2.0986 50 1 -3.5463 -2.6363 -2.0938 51 1 0.1673 -3.7708 -3.8967 52 1 -0.4580 -2.1021 -3.8957 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001122541429.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:18:59 Heat of formation + Delta-G solvation = 41.188799 kcal Electronic energy + Delta-G solvation = -32087.997283 eV Core-core repulsion = 28088.655245 eV Total energy + Delta-G solvation = -3999.342038 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -44.12883 -41.77073 -37.96223 -37.35727 -36.34702 -34.62979 -34.20069 -32.96461 -32.56906 -31.25663 -28.99909 -28.36750 -27.98333 -26.72995 -26.01878 -25.41727 -22.70184 -22.50627 -22.06102 -21.55921 -20.67264 -19.84012 -18.74001 -18.42618 -17.76032 -17.54864 -16.60305 -16.53370 -16.31149 -16.07212 -15.95690 -15.75888 -15.56815 -15.32034 -15.18673 -14.88086 -14.28238 -14.12211 -14.02146 -13.79462 -13.76932 -13.35399 -13.04531 -13.01128 -12.78940 -12.71946 -12.68732 -12.59719 -12.53248 -12.44448 -12.30608 -12.09749 -11.88733 -11.67824 -11.43619 -11.37868 -11.36089 -11.24809 -11.09515 -10.83063 -10.55671 -10.52367 -10.14448 -9.46265 -8.18337 -6.27935 0.61852 0.87634 1.39908 1.42370 1.49914 1.52741 1.73184 2.41707 2.56509 2.85968 3.15258 3.32757 3.50057 3.54612 3.68228 3.71538 3.75620 3.79738 3.87951 3.93743 4.07867 4.14068 4.18548 4.33807 4.36202 4.43070 4.48031 4.55542 4.57139 4.60517 4.63705 4.71589 4.78094 4.82470 4.86484 4.90579 5.01800 5.03475 5.05811 5.11430 5.13194 5.22963 5.27328 5.30816 5.43304 5.51593 5.54029 5.63592 5.76740 5.80418 5.81755 5.87984 6.10943 6.27719 6.87416 7.40515 7.68461 8.92961 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.019954 B = 0.002580 C = 0.002471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1402.886171 B =10851.605826 C =11326.540704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.167 4.167 3 C -0.121 4.121 4 C 0.140 3.860 5 N -0.460 5.460 6 C 0.200 3.800 7 C -0.024 4.024 8 C -0.095 4.095 9 C 0.032 3.968 10 C -0.540 4.540 11 H 0.053 0.947 12 C 0.005 3.995 13 N -0.929 5.929 14 Si 0.956 3.044 15 H -0.265 1.265 16 H -0.282 1.282 17 H -0.273 1.273 18 N -0.329 5.329 19 N -0.358 5.358 20 C 0.353 3.647 21 N -0.430 5.430 22 C 0.027 3.973 23 C 0.078 3.922 24 H 0.145 0.855 25 C -0.134 4.134 26 C -0.135 4.135 27 C 0.076 3.924 28 H 0.137 0.863 29 C 0.047 3.953 30 O -0.386 6.386 31 H 0.109 0.891 32 H 0.122 0.878 33 H 0.046 0.954 34 H 0.077 0.923 35 H 0.062 0.938 36 H 0.123 0.877 37 H 0.111 0.889 38 H 0.100 0.900 39 H 0.088 0.912 40 H 0.033 0.967 41 H 0.070 0.930 42 H 0.006 0.994 43 H -0.008 1.008 44 H 0.264 0.736 45 H 0.037 0.963 46 H 0.103 0.897 47 H 0.090 0.910 48 H 0.088 0.912 49 H 0.079 0.921 50 H 0.086 0.914 51 H 0.043 0.957 52 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.569 -14.450 6.641 30.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.168 4.168 3 C -0.177 4.177 4 C 0.020 3.980 5 N -0.153 5.153 6 C -0.069 4.069 7 C -0.063 4.063 8 C -0.133 4.133 9 C -0.005 4.005 10 C -0.578 4.578 11 H 0.071 0.929 12 C -0.193 4.193 13 N -0.569 5.569 14 Si 0.781 3.219 15 H -0.190 1.190 16 H -0.207 1.207 17 H -0.199 1.199 18 N -0.168 5.168 19 N -0.202 5.202 20 C -0.004 4.004 21 N -0.155 5.155 22 C -0.101 4.101 23 C 0.020 3.980 24 H 0.163 0.837 25 C -0.171 4.171 26 C -0.173 4.173 27 C 0.018 3.982 28 H 0.154 0.846 29 C -0.080 4.080 30 O -0.305 6.305 31 H 0.127 0.873 32 H 0.140 0.860 33 H 0.065 0.935 34 H 0.096 0.904 35 H 0.081 0.919 36 H 0.141 0.859 37 H 0.129 0.871 38 H 0.119 0.881 39 H 0.107 0.893 40 H 0.052 0.948 41 H 0.088 0.912 42 H 0.025 0.975 43 H 0.010 0.990 44 H 0.072 0.928 45 H 0.055 0.945 46 H 0.121 0.879 47 H 0.109 0.891 48 H 0.107 0.893 49 H 0.098 0.902 50 H 0.105 0.895 51 H 0.061 0.939 52 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -25.359 -14.654 5.471 29.795 hybrid contribution 1.059 1.044 0.230 1.505 sum -24.300 -13.609 5.701 28.429 Atomic orbital electron populations 1.24132 0.94402 1.03546 0.95387 1.21710 0.96117 0.94334 1.04662 1.20945 1.00498 0.95038 1.01228 1.21237 1.02642 0.96357 0.77810 1.46408 1.11625 1.43090 1.14156 1.25059 0.90084 1.01752 0.90024 1.20131 0.90452 0.94649 1.01114 1.21569 0.99904 0.92375 0.99477 1.18933 0.92262 0.93966 0.95368 1.21585 1.04517 0.96169 1.35546 0.92883 1.25851 0.95124 1.03200 0.95120 1.70062 1.08916 1.37524 1.40445 0.85636 0.77760 0.79762 0.78730 1.18974 1.20711 1.19858 1.73934 1.12030 1.15100 1.15755 1.74462 1.00489 1.22839 1.22443 1.22679 0.91369 0.98963 0.87377 1.58999 1.05640 1.33081 1.17771 1.23415 1.00005 0.89130 0.97505 1.23943 0.89580 0.98489 0.85949 0.83721 1.22912 1.00058 0.96387 0.97782 1.22856 1.01214 0.99551 0.93684 1.23610 0.92916 0.83560 0.98067 0.84557 1.22772 0.95278 1.01670 0.88322 1.89292 1.86503 1.28715 1.25960 0.87256 0.86023 0.93510 0.90399 0.91917 0.85877 0.87120 0.88140 0.89308 0.94809 0.91154 0.97527 0.98999 0.92764 0.94499 0.87858 0.89106 0.89336 0.90209 0.89506 0.93859 0.89669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.05 13.89 67.78 0.94 -1.11 16 2 C -0.17 -3.23 5.64 -16.49 -0.09 -3.33 16 3 C -0.12 -2.92 8.82 71.24 0.63 -2.29 16 4 C 0.14 2.60 6.23 85.63 0.53 3.14 16 5 N -0.46 -12.26 2.79 -518.90 -1.45 -13.71 16 6 C 0.20 6.76 7.32 137.64 1.01 7.77 16 7 C -0.02 -0.81 5.64 29.85 0.17 -0.64 16 8 C -0.09 -3.90 5.14 30.59 0.16 -3.75 16 9 C 0.03 1.63 4.97 29.85 0.15 1.78 16 10 C -0.54 -30.50 9.11 25.60 0.23 -30.26 16 11 H 0.05 2.93 7.74 -2.91 -0.02 2.90 16 12 C 0.01 0.29 5.46 84.65 0.46 0.75 16 13 N -0.93 -55.66 13.29 21.45 0.28 -55.38 16 14 Si 0.96 44.19 29.54 68.60 2.03 46.21 16 15 H -0.26 -11.65 7.11 99.48 0.71 -10.94 16 16 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 17 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 18 N -0.33 -13.10 12.18 -49.53 -0.60 -13.70 16 19 N -0.36 -13.07 11.31 -58.00 -0.66 -13.72 16 20 C 0.35 9.92 6.95 260.11 1.81 11.73 16 21 N -0.43 -8.52 3.81 -700.10 -2.67 -11.18 16 22 C 0.03 0.41 5.07 86.96 0.44 0.86 16 23 C 0.08 0.89 4.76 31.87 0.15 1.04 16 24 H 0.15 0.99 8.14 -2.39 -0.02 0.97 16 25 C -0.13 -1.09 6.26 31.71 0.20 -0.89 16 26 C -0.14 -1.37 6.25 31.71 0.20 -1.17 16 27 C 0.08 1.08 4.68 31.38 0.15 1.23 16 28 H 0.14 1.50 8.14 -2.38 -0.02 1.48 16 29 C 0.05 0.95 4.63 86.48 0.40 1.36 16 30 O -0.39 -6.51 11.23 -148.98 -1.67 -8.18 16 31 H 0.11 1.51 8.04 -2.91 -0.02 1.48 16 32 H 0.12 1.38 5.73 -2.91 -0.02 1.36 16 33 H 0.05 1.40 6.52 -2.39 -0.02 1.38 16 34 H 0.08 1.63 8.06 -2.39 -0.02 1.61 16 35 H 0.06 1.62 7.81 -2.39 -0.02 1.60 16 36 H 0.12 1.52 6.08 -2.39 -0.01 1.51 16 37 H 0.11 1.92 6.92 -2.39 -0.02 1.90 16 38 H 0.10 2.84 7.00 -2.39 -0.02 2.82 16 39 H 0.09 3.11 8.14 -2.39 -0.02 3.09 16 40 H 0.03 1.52 8.14 -2.39 -0.02 1.50 16 41 H 0.07 2.73 4.54 -2.38 -0.01 2.72 16 42 H 0.01 0.33 8.14 -2.39 -0.02 0.32 16 43 H -0.01 -0.47 8.14 -2.38 -0.02 -0.49 16 44 H 0.26 14.89 8.31 -92.71 -0.77 14.12 16 45 H 0.04 0.75 8.14 -2.39 -0.02 0.73 16 46 H 0.10 1.21 6.27 -2.39 -0.01 1.19 16 47 H 0.09 0.48 8.14 -2.39 -0.02 0.46 16 48 H 0.09 0.64 5.60 -2.39 -0.01 0.63 16 49 H 0.08 0.93 7.84 -2.39 -0.02 0.91 16 50 H 0.09 0.66 8.14 -2.38 -0.02 0.64 16 51 H 0.04 1.09 7.88 -2.39 -0.02 1.07 16 52 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 Total: -1.00 -74.03 402.03 3.71 -70.31 By element: Atomic # 1 Polarization: 12.22 SS G_CDS: 0.92 Total: 13.14 kcal Atomic # 6 Polarization: -21.32 SS G_CDS: 7.53 Total: -13.79 kcal Atomic # 7 Polarization: -102.60 SS G_CDS: -5.09 Total: -107.69 kcal Atomic # 8 Polarization: -6.51 SS G_CDS: -1.67 Total: -8.18 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.21 kcal Total: -74.03 3.71 -70.31 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001122541429.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.504 kcal (2) G-P(sol) polarization free energy of solvation -74.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.315 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds