Wall clock time and date at job start Wed Apr 1 2020 04:26:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47445 * 2 1 4 4 C 1.53004 * 109.47195 * 119.99832 * 2 1 3 5 5 C 1.50700 * 109.47208 * 174.99698 * 4 2 1 6 6 O 1.21283 * 119.99803 * 359.97438 * 5 4 2 7 7 N 1.34777 * 119.99675 * 180.27843 * 5 4 2 8 8 C 1.46497 * 119.99525 * 179.72583 * 7 5 4 9 9 C 1.50706 * 109.47174 * 179.97438 * 8 7 5 10 10 C 1.38068 * 119.56950 * 94.99475 * 9 8 7 11 11 C 1.38838 * 119.32887 * 179.97438 * 10 9 8 12 12 C 1.38345 * 118.50379 * 0.02562 * 11 10 9 13 13 C 1.39098 * 119.09890 * 359.97438 * 12 11 10 14 14 N 1.39006 * 119.70608 * 179.97438 * 13 12 11 15 15 C 1.47910 * 110.99466 * 59.87951 * 14 13 12 16 16 C 1.53994 * 107.05477 * 214.15356 * 15 14 13 17 17 C 1.54594 * 105.14088 * 1.22647 * 16 15 14 18 18 H 1.09003 * 110.72398 * 263.59388 * 17 16 15 19 19 N 1.46502 * 110.72330 * 140.31426 * 17 16 15 20 20 C 1.36935 * 119.99956 * 86.45374 * 19 17 16 21 21 H 1.08004 * 120.00128 * 0.02562 * 20 19 17 22 22 C 1.38813 * 120.00209 * 179.97438 * 20 19 17 23 23 N 1.31624 * 119.99826 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 120.00200 * 179.97438 * 22 20 19 25 25 H 1.48495 * 109.47128 * 0.02562 * 24 22 20 26 26 H 1.48498 * 109.47162 * 120.00230 * 24 22 20 27 27 H 1.48506 * 109.47105 * 240.00590 * 24 22 20 28 28 C 1.48535 * 111.00251 * 302.48367 * 14 13 12 29 29 N 1.31937 * 119.57578 * 274.73201 * 9 8 7 30 30 H 1.09000 * 109.46927 * 300.00126 * 1 2 3 31 31 H 1.09004 * 109.46944 * 59.99884 * 1 2 3 32 32 H 1.08992 * 109.47370 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.46927 * 239.99874 * 2 1 3 34 34 H 1.09000 * 109.47161 * 60.00017 * 3 2 1 35 35 H 1.09003 * 109.47289 * 180.02562 * 3 2 1 36 36 H 1.09004 * 109.46667 * 299.99759 * 3 2 1 37 37 H 1.09009 * 109.46730 * 54.99604 * 4 2 1 38 38 H 1.08998 * 109.46846 * 295.00148 * 4 2 1 39 39 H 0.97000 * 119.99894 * 359.71837 * 7 5 4 40 40 H 1.08995 * 109.47421 * 299.99467 * 8 7 5 41 41 H 1.09001 * 109.47621 * 60.00103 * 8 7 5 42 42 H 1.08001 * 120.33870 * 359.96856 * 10 9 8 43 43 H 1.07999 * 120.75199 * 179.97438 * 11 10 9 44 44 H 1.07997 * 120.45079 * 179.97438 * 12 11 10 45 45 H 1.09000 * 109.91778 * 333.50588 * 15 14 13 46 46 H 1.08994 * 109.91514 * 94.60601 * 15 14 13 47 47 H 1.09000 * 110.30381 * 120.14180 * 16 15 14 48 48 H 1.09001 * 110.30681 * 242.20956 * 16 15 14 49 49 H 0.96995 * 120.00453 * 266.45272 * 19 17 16 50 50 H 0.96997 * 119.99535 * 180.02562 * 23 22 20 51 51 H 1.08998 * 110.66572 * 278.15026 * 28 14 13 52 52 H 1.08999 * 110.66450 * 41.28571 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5419 -0.8294 1.1889 6 8 4.1449 -0.3749 0.2398 7 7 4.2144 -1.4368 2.1866 8 6 5.6738 -1.5472 2.1250 9 6 6.1758 -2.2620 3.3532 10 6 6.3977 -3.6239 3.3060 11 6 6.8607 -4.2772 4.4402 12 6 7.0841 -3.5338 5.5854 13 6 6.8392 -2.1648 5.5616 14 7 7.0588 -1.4058 6.7053 15 6 8.4719 -1.4903 7.1341 16 6 8.4811 -1.4321 8.6729 17 6 6.9932 -1.3423 9.0825 18 1 6.7027 -0.3060 9.2558 19 7 6.7318 -2.1607 10.2692 20 6 6.9271 -1.6365 11.5190 21 1 7.2735 -0.6196 11.6301 22 6 6.6790 -2.4119 12.6434 23 7 6.2564 -3.6511 12.5081 24 14 6.9461 -1.6970 14.3484 25 1 7.4209 -0.2951 14.2286 26 1 5.6669 -1.7232 15.1021 27 1 7.9625 -2.5043 15.0700 28 6 6.2580 -1.9184 7.8464 29 7 6.4026 -1.5774 4.4580 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 3.1301 1.4424 -0.0005 36 1 1.6767 1.9563 -0.8901 37 1 1.6052 -1.7198 1.2952 38 1 1.7516 -0.1583 2.1370 39 1 3.7319 -1.8005 2.9455 40 1 5.9585 -2.1092 1.2355 41 1 6.1122 -0.5503 2.0807 42 1 6.2128 -4.1755 2.3960 43 1 7.0416 -5.3419 4.4291 44 1 7.4437 -4.0100 6.4855 45 1 8.9071 -2.4305 6.7954 46 1 9.0350 -0.6518 6.7245 47 1 8.9325 -2.3356 9.0828 48 1 9.0232 -0.5505 9.0149 49 1 6.4204 -3.0739 10.1695 50 1 6.0827 -4.1926 13.2939 51 1 5.2355 -1.5439 7.7977 52 1 6.2693 -3.0082 7.8654 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001127814923.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:26:43 Heat of formation + Delta-G solvation = 16.459834 kcal Electronic energy + Delta-G solvation = -29506.183846 eV Core-core repulsion = 25505.769480 eV Total energy + Delta-G solvation = -4000.414366 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.94243 -40.05187 -38.45896 -36.14634 -35.13866 -34.34984 -32.72731 -32.19445 -30.64099 -29.37807 -28.55390 -27.45479 -27.36392 -26.25496 -23.73255 -22.98768 -22.61957 -21.27512 -20.74862 -20.12172 -19.90615 -17.74115 -17.30400 -17.08737 -16.76325 -16.24130 -16.10648 -15.86797 -15.14244 -14.94115 -14.52392 -14.39445 -14.21301 -14.10083 -13.88431 -13.52790 -13.26791 -13.12175 -13.07193 -12.86927 -12.61427 -12.44243 -12.31081 -12.16543 -12.03710 -11.72389 -11.54107 -11.41993 -11.17609 -11.16424 -10.98838 -10.86530 -10.70090 -10.27135 -10.14810 -10.06394 -9.96113 -9.82530 -9.75611 -9.34858 -9.00121 -8.97554 -8.37704 -7.06420 -5.85040 -3.14736 0.73106 1.06268 2.40263 2.88342 3.38992 3.41529 3.46088 3.47432 3.60317 4.19900 4.39602 4.50748 4.52579 4.56874 4.59482 4.73899 4.81690 4.93344 4.96467 5.15298 5.16767 5.24036 5.25513 5.28544 5.28926 5.34069 5.37935 5.40599 5.53485 5.58263 5.61222 5.63440 5.68097 5.74857 5.83942 5.87999 5.91673 5.98025 6.02484 6.07468 6.17302 6.22777 6.27822 6.29180 6.37965 6.66376 6.74286 7.04865 7.16957 7.20671 7.65818 7.96189 7.97030 8.33147 9.44663 9.99330 10.33946 11.37496 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.013912 B = 0.001863 C = 0.001741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2012.161504 B =15023.218776 C =16081.191764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.080 4.080 3 C -0.155 4.155 4 C -0.138 4.138 5 C 0.515 3.485 6 O -0.538 6.538 7 N -0.724 5.724 8 C 0.176 3.824 9 C 0.111 3.889 10 C -0.166 4.166 11 C -0.066 4.066 12 C -0.190 4.190 13 C 0.315 3.685 14 N -0.481 5.481 15 C 0.049 3.951 16 C -0.152 4.152 17 C 0.181 3.819 18 H 0.066 0.934 19 N -0.719 5.719 20 C -0.240 4.240 21 H 0.073 0.927 22 C -0.013 4.013 23 N -0.933 5.933 24 Si 0.908 3.092 25 H -0.279 1.279 26 H -0.291 1.291 27 H -0.291 1.291 28 C 0.040 3.960 29 N -0.452 5.452 30 H 0.055 0.945 31 H 0.057 0.943 32 H 0.054 0.946 33 H 0.077 0.923 34 H 0.048 0.952 35 H 0.074 0.926 36 H 0.051 0.949 37 H 0.093 0.907 38 H 0.095 0.905 39 H 0.403 0.597 40 H 0.084 0.916 41 H 0.086 0.914 42 H 0.136 0.864 43 H 0.137 0.863 44 H 0.139 0.861 45 H 0.043 0.957 46 H 0.077 0.923 47 H 0.074 0.926 48 H 0.066 0.934 49 H 0.384 0.616 50 H 0.255 0.745 51 H 0.084 0.916 52 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.568 0.441 -24.992 25.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.099 4.099 3 C -0.212 4.212 4 C -0.178 4.178 5 C 0.302 3.698 6 O -0.415 6.415 7 N -0.377 5.377 8 C 0.052 3.948 9 C -0.028 4.028 10 C -0.186 4.186 11 C -0.092 4.092 12 C -0.214 4.214 13 C 0.084 3.916 14 N -0.204 5.204 15 C -0.078 4.078 16 C -0.194 4.194 17 C 0.070 3.930 18 H 0.084 0.916 19 N -0.359 5.359 20 C -0.371 4.371 21 H 0.091 0.909 22 C -0.209 4.209 23 N -0.581 5.581 24 Si 0.739 3.261 25 H -0.204 1.204 26 H -0.218 1.218 27 H -0.219 1.219 28 C -0.087 4.087 29 N -0.163 5.163 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.073 0.927 33 H 0.095 0.905 34 H 0.067 0.933 35 H 0.093 0.907 36 H 0.070 0.930 37 H 0.111 0.889 38 H 0.113 0.887 39 H 0.237 0.763 40 H 0.102 0.898 41 H 0.104 0.896 42 H 0.153 0.847 43 H 0.155 0.845 44 H 0.157 0.843 45 H 0.061 0.939 46 H 0.095 0.905 47 H 0.092 0.908 48 H 0.085 0.915 49 H 0.218 0.782 50 H 0.065 0.935 51 H 0.102 0.898 52 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -5.387 2.339 -25.635 26.300 hybrid contribution 0.305 -2.045 1.621 2.627 sum -5.082 0.295 -24.015 24.548 Atomic orbital electron populations 1.21870 0.94932 1.01724 1.02084 1.20859 0.95073 0.96971 0.97004 1.21971 1.03169 0.94934 1.01104 1.21799 0.91613 1.03131 1.01266 1.20746 0.90261 0.76965 0.81830 1.90676 1.70438 1.47201 1.33191 1.46005 1.07138 1.60218 1.24298 1.20048 0.80389 1.01261 0.93059 1.20977 0.97686 0.90821 0.93331 1.21950 1.01827 0.95108 0.99748 1.21507 0.95132 1.00515 0.92040 1.22775 1.02261 0.96126 1.00198 1.19881 0.93080 0.87674 0.90963 1.61562 1.07167 1.50443 1.01205 1.22960 0.86971 1.00605 0.97284 1.23229 1.01650 1.02694 0.91801 1.21037 0.90692 0.95687 0.85624 0.91619 1.42358 1.79696 1.13595 1.00271 1.19292 1.37472 0.97187 0.83135 0.90875 1.24763 1.01969 0.96162 0.97971 1.69669 1.51955 1.07777 1.28701 0.86101 0.77324 0.78130 0.84540 1.20442 1.21828 1.21855 1.23607 0.97823 0.98213 0.89062 1.67111 1.10755 1.40207 0.98184 0.92548 0.92378 0.92695 0.90476 0.93255 0.90678 0.92980 0.88874 0.88678 0.76310 0.89804 0.89556 0.84654 0.84541 0.84326 0.93873 0.90500 0.90754 0.91522 0.78232 0.93498 0.89806 0.92975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.85 9.19 37.16 0.34 -0.51 16 2 C -0.08 -0.59 2.57 -90.62 -0.23 -0.82 16 3 C -0.15 -1.31 8.93 37.16 0.33 -0.97 16 4 C -0.14 -0.93 5.17 -27.88 -0.14 -1.08 16 5 C 0.51 4.94 7.55 -10.98 -0.08 4.86 16 6 O -0.54 -6.92 13.97 5.55 0.08 -6.84 16 7 N -0.72 -6.35 5.55 -61.47 -0.34 -6.69 16 8 C 0.18 1.71 5.98 -5.19 -0.03 1.68 16 9 C 0.11 1.20 6.15 -82.61 -0.51 0.70 16 10 C -0.17 -1.50 9.71 -39.42 -0.38 -1.88 16 11 C -0.07 -0.63 10.17 -39.32 -0.40 -1.03 16 12 C -0.19 -2.32 7.89 -39.22 -0.31 -2.63 16 13 C 0.31 4.49 5.85 -155.01 -0.91 3.58 16 14 N -0.48 -7.50 5.36 -169.24 -0.91 -8.41 16 15 C 0.05 0.71 6.50 -2.75 -0.02 0.70 16 16 C -0.15 -2.59 6.67 -25.38 -0.17 -2.76 16 17 C 0.18 3.49 3.70 -66.07 -0.24 3.25 16 18 H 0.07 1.32 8.12 -51.93 -0.42 0.90 16 19 N -0.72 -17.19 5.19 -51.62 -0.27 -17.45 16 20 C -0.24 -6.43 9.98 -15.06 -0.15 -6.58 16 21 H 0.07 1.92 7.83 -52.48 -0.41 1.51 16 22 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 23 N -0.93 -27.32 13.06 55.49 0.72 -26.59 16 24 Si 0.91 21.88 29.55 -169.99 -5.02 16.86 16 25 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 26 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 27 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 28 C 0.04 0.67 6.00 -1.90 -0.01 0.66 16 29 N -0.45 -6.30 10.31 -8.67 -0.09 -6.39 16 30 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 31 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 33 H 0.08 0.65 7.95 -51.93 -0.41 0.24 16 34 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.07 0.81 5.95 -51.93 -0.31 0.50 16 36 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.09 0.46 8.14 -51.92 -0.42 0.04 16 38 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 39 H 0.40 3.02 8.46 -40.82 -0.35 2.67 16 40 H 0.08 0.71 8.04 -51.93 -0.42 0.29 16 41 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 42 H 0.14 0.86 8.06 -52.49 -0.42 0.44 16 43 H 0.14 0.95 8.06 -52.49 -0.42 0.53 16 44 H 0.14 1.68 7.04 -52.49 -0.37 1.31 16 45 H 0.04 0.59 6.66 -51.93 -0.35 0.24 16 46 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 47 H 0.07 1.35 8.05 -51.93 -0.42 0.94 16 48 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 49 H 0.38 9.69 7.72 -40.82 -0.32 9.38 16 50 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 51 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 52 H 0.05 0.86 6.49 -51.93 -0.34 0.52 16 LS Contribution 418.12 15.07 6.30 6.30 Total: -1.00 -31.72 418.12 -11.27 -42.99 By element: Atomic # 1 Polarization: 18.25 SS G_CDS: -8.73 Total: 9.51 kcal Atomic # 6 Polarization: -0.27 SS G_CDS: -3.01 Total: -3.28 kcal Atomic # 7 Polarization: -64.65 SS G_CDS: -0.88 Total: -65.53 kcal Atomic # 8 Polarization: -6.92 SS G_CDS: 0.08 Total: -6.84 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 6.30 Total: 6.30 kcal Total: -31.72 -11.27 -42.99 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001127814923.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.453 kcal (2) G-P(sol) polarization free energy of solvation -31.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.993 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds