Wall clock time and date at job start Wed Apr 1 2020 04:26:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47445 * 2 1 4 4 C 1.53004 * 109.47195 * 119.99832 * 2 1 3 5 5 C 1.50700 * 109.47208 * 174.99698 * 4 2 1 6 6 O 1.21283 * 119.99803 * 359.97438 * 5 4 2 7 7 N 1.34777 * 119.99675 * 180.27843 * 5 4 2 8 8 C 1.46497 * 119.99525 * 179.72583 * 7 5 4 9 9 C 1.50706 * 109.47174 * 179.97438 * 8 7 5 10 10 C 1.38068 * 119.56950 * 94.99475 * 9 8 7 11 11 C 1.38838 * 119.32887 * 179.97438 * 10 9 8 12 12 C 1.38345 * 118.50379 * 0.02562 * 11 10 9 13 13 C 1.39098 * 119.09890 * 359.97438 * 12 11 10 14 14 N 1.39006 * 119.70608 * 179.97438 * 13 12 11 15 15 C 1.47910 * 110.99466 * 59.87951 * 14 13 12 16 16 C 1.53994 * 107.05477 * 214.15356 * 15 14 13 17 17 C 1.54594 * 105.14088 * 1.22647 * 16 15 14 18 18 H 1.09003 * 110.72398 * 263.59388 * 17 16 15 19 19 N 1.46502 * 110.72330 * 140.31426 * 17 16 15 20 20 C 1.36935 * 119.99956 * 86.45374 * 19 17 16 21 21 H 1.08004 * 120.00128 * 0.02562 * 20 19 17 22 22 C 1.38813 * 120.00209 * 179.97438 * 20 19 17 23 23 N 1.31624 * 119.99826 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 120.00200 * 179.97438 * 22 20 19 25 25 H 1.48495 * 109.47128 * 0.02562 * 24 22 20 26 26 H 1.48498 * 109.47162 * 120.00230 * 24 22 20 27 27 H 1.48506 * 109.47105 * 240.00590 * 24 22 20 28 28 C 1.48535 * 111.00251 * 302.48367 * 14 13 12 29 29 N 1.31937 * 119.57578 * 274.73201 * 9 8 7 30 30 H 1.09000 * 109.46927 * 300.00126 * 1 2 3 31 31 H 1.09004 * 109.46944 * 59.99884 * 1 2 3 32 32 H 1.08992 * 109.47370 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.46927 * 239.99874 * 2 1 3 34 34 H 1.09000 * 109.47161 * 60.00017 * 3 2 1 35 35 H 1.09003 * 109.47289 * 180.02562 * 3 2 1 36 36 H 1.09004 * 109.46667 * 299.99759 * 3 2 1 37 37 H 1.09009 * 109.46730 * 54.99604 * 4 2 1 38 38 H 1.08998 * 109.46846 * 295.00148 * 4 2 1 39 39 H 0.97000 * 119.99894 * 359.71837 * 7 5 4 40 40 H 1.08995 * 109.47421 * 299.99467 * 8 7 5 41 41 H 1.09001 * 109.47621 * 60.00103 * 8 7 5 42 42 H 1.08001 * 120.33870 * 359.96856 * 10 9 8 43 43 H 1.07999 * 120.75199 * 179.97438 * 11 10 9 44 44 H 1.07997 * 120.45079 * 179.97438 * 12 11 10 45 45 H 1.09000 * 109.91778 * 333.50588 * 15 14 13 46 46 H 1.08994 * 109.91514 * 94.60601 * 15 14 13 47 47 H 1.09000 * 110.30381 * 120.14180 * 16 15 14 48 48 H 1.09001 * 110.30681 * 242.20956 * 16 15 14 49 49 H 0.96995 * 120.00453 * 266.45272 * 19 17 16 50 50 H 0.96997 * 119.99535 * 180.02562 * 23 22 20 51 51 H 1.08998 * 110.66572 * 278.15026 * 28 14 13 52 52 H 1.08999 * 110.66450 * 41.28571 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5419 -0.8294 1.1889 6 8 4.1449 -0.3749 0.2398 7 7 4.2144 -1.4368 2.1866 8 6 5.6738 -1.5472 2.1250 9 6 6.1758 -2.2620 3.3532 10 6 6.3977 -3.6239 3.3060 11 6 6.8607 -4.2772 4.4402 12 6 7.0841 -3.5338 5.5854 13 6 6.8392 -2.1648 5.5616 14 7 7.0588 -1.4058 6.7053 15 6 8.4719 -1.4903 7.1341 16 6 8.4811 -1.4321 8.6729 17 6 6.9932 -1.3423 9.0825 18 1 6.7027 -0.3060 9.2558 19 7 6.7318 -2.1607 10.2692 20 6 6.9271 -1.6365 11.5190 21 1 7.2735 -0.6196 11.6301 22 6 6.6790 -2.4119 12.6434 23 7 6.2564 -3.6511 12.5081 24 14 6.9461 -1.6970 14.3484 25 1 7.4209 -0.2951 14.2286 26 1 5.6669 -1.7232 15.1021 27 1 7.9625 -2.5043 15.0700 28 6 6.2580 -1.9184 7.8464 29 7 6.4026 -1.5774 4.4580 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 3.1301 1.4424 -0.0005 36 1 1.6767 1.9563 -0.8901 37 1 1.6052 -1.7198 1.2952 38 1 1.7516 -0.1583 2.1370 39 1 3.7319 -1.8005 2.9455 40 1 5.9585 -2.1092 1.2355 41 1 6.1122 -0.5503 2.0807 42 1 6.2128 -4.1755 2.3960 43 1 7.0416 -5.3419 4.4291 44 1 7.4437 -4.0100 6.4855 45 1 8.9071 -2.4305 6.7954 46 1 9.0350 -0.6518 6.7245 47 1 8.9325 -2.3356 9.0828 48 1 9.0232 -0.5505 9.0149 49 1 6.4204 -3.0739 10.1695 50 1 6.0827 -4.1926 13.2939 51 1 5.2355 -1.5439 7.7977 52 1 6.2693 -3.0082 7.8654 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001127814923.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:26:42 Heat of formation + Delta-G solvation = -4.417755 kcal Electronic energy + Delta-G solvation = -29507.089166 eV Core-core repulsion = 25505.769480 eV Total energy + Delta-G solvation = -4001.319686 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.89905 -40.85124 -39.64278 -36.85658 -36.29304 -35.64693 -33.81675 -33.46361 -32.08682 -30.50356 -29.46622 -28.89638 -27.93403 -27.02501 -25.55345 -24.22126 -23.45198 -22.01500 -21.85563 -21.41234 -20.76371 -19.27614 -18.56161 -18.11167 -17.59509 -17.10765 -17.02397 -16.72985 -16.52262 -16.15745 -15.65220 -15.49056 -15.25466 -14.98813 -14.80722 -14.72805 -14.63638 -14.30887 -14.02151 -13.80968 -13.51532 -13.27504 -13.20476 -13.08048 -13.01982 -12.98246 -12.76554 -12.70932 -12.69557 -12.29623 -12.10241 -12.05236 -11.74999 -11.73624 -11.57335 -11.55757 -11.01234 -10.95836 -10.83888 -10.73733 -10.12103 -9.89862 -9.51518 -9.04652 -7.95954 -5.24955 -0.13759 0.22218 1.48394 1.49134 1.58892 1.67022 2.13095 2.36607 2.57743 2.75388 3.32455 3.37716 3.62296 3.75789 3.79052 3.92786 3.94001 3.94283 4.00949 4.04907 4.13348 4.19994 4.26122 4.30604 4.35399 4.43102 4.54270 4.59818 4.67694 4.69863 4.73769 4.74862 4.76902 4.86836 4.90711 4.91921 5.06787 5.11567 5.12122 5.12812 5.24327 5.31780 5.32105 5.32950 5.44135 5.50142 5.51165 5.53884 5.68559 6.09077 6.26382 6.50801 7.03916 7.24568 7.32959 8.04816 8.29569 9.27387 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.013912 B = 0.001863 C = 0.001741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2012.161504 B =15023.218776 C =16081.191764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.080 4.080 3 C -0.153 4.153 4 C -0.133 4.133 5 C 0.512 3.488 6 O -0.575 6.575 7 N -0.718 5.718 8 C 0.181 3.819 9 C 0.107 3.893 10 C -0.148 4.148 11 C -0.058 4.058 12 C -0.198 4.198 13 C 0.287 3.713 14 N -0.488 5.488 15 C 0.058 3.942 16 C -0.142 4.142 17 C 0.174 3.826 18 H 0.055 0.945 19 N -0.728 5.728 20 C -0.238 4.238 21 H 0.076 0.924 22 C -0.073 4.073 23 N -0.968 5.968 24 Si 0.971 3.029 25 H -0.267 1.267 26 H -0.294 1.294 27 H -0.294 1.294 28 C 0.055 3.945 29 N -0.481 5.481 30 H 0.060 0.940 31 H 0.058 0.942 32 H 0.066 0.934 33 H 0.064 0.936 34 H 0.054 0.946 35 H 0.048 0.952 36 H 0.055 0.945 37 H 0.118 0.882 38 H 0.107 0.893 39 H 0.410 0.590 40 H 0.100 0.900 41 H 0.064 0.936 42 H 0.171 0.829 43 H 0.169 0.831 44 H 0.135 0.865 45 H 0.055 0.945 46 H 0.086 0.914 47 H 0.060 0.940 48 H 0.069 0.931 49 H 0.375 0.625 50 H 0.251 0.749 51 H 0.078 0.922 52 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.030 -0.358 -26.315 27.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.099 4.099 3 C -0.211 4.211 4 C -0.173 4.173 5 C 0.300 3.700 6 O -0.455 6.455 7 N -0.370 5.370 8 C 0.057 3.943 9 C -0.032 4.032 10 C -0.168 4.168 11 C -0.084 4.084 12 C -0.221 4.221 13 C 0.057 3.943 14 N -0.211 5.211 15 C -0.069 4.069 16 C -0.183 4.183 17 C 0.064 3.936 18 H 0.073 0.927 19 N -0.368 5.368 20 C -0.370 4.370 21 H 0.094 0.906 22 C -0.265 4.265 23 N -0.618 5.618 24 Si 0.800 3.200 25 H -0.191 1.191 26 H -0.222 1.222 27 H -0.221 1.221 28 C -0.072 4.072 29 N -0.192 5.192 30 H 0.080 0.920 31 H 0.077 0.923 32 H 0.085 0.915 33 H 0.082 0.918 34 H 0.073 0.927 35 H 0.067 0.933 36 H 0.074 0.926 37 H 0.136 0.864 38 H 0.125 0.875 39 H 0.246 0.754 40 H 0.118 0.882 41 H 0.083 0.917 42 H 0.188 0.812 43 H 0.187 0.813 44 H 0.153 0.847 45 H 0.074 0.926 46 H 0.104 0.896 47 H 0.079 0.921 48 H 0.088 0.912 49 H 0.207 0.793 50 H 0.060 0.940 51 H 0.096 0.904 52 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -5.839 1.570 -26.981 27.650 hybrid contribution 0.453 -1.765 1.870 2.611 sum -5.386 -0.195 -25.111 25.683 Atomic orbital electron populations 1.21826 0.93310 1.02591 1.02394 1.20849 0.96317 0.95936 0.96823 1.21941 1.01394 0.96169 1.01566 1.21843 0.89403 1.04686 1.01342 1.21274 0.91401 0.76096 0.81210 1.90667 1.71383 1.48753 1.34696 1.45972 1.06816 1.59848 1.24370 1.19983 0.80838 1.00269 0.93235 1.21182 0.97628 0.91787 0.92615 1.22300 0.99491 0.94262 1.00788 1.21881 0.93623 1.01919 0.90966 1.22772 1.02723 0.95398 1.01224 1.19813 0.95399 0.88452 0.90624 1.61446 1.07089 1.51247 1.01340 1.22877 0.87088 1.01693 0.95221 1.23008 0.99460 1.02144 0.93644 1.21165 0.92660 0.94549 0.85247 0.92700 1.42460 1.79884 1.13580 1.00899 1.19624 1.35830 0.97156 0.84386 0.90604 1.25516 1.02884 0.96680 1.01428 1.69808 1.53822 1.08996 1.29201 0.85111 0.76742 0.77905 0.80229 1.19142 1.22170 1.22093 1.23326 0.97387 0.97988 0.88504 1.67005 1.11640 1.41556 0.98969 0.92045 0.92297 0.91545 0.91794 0.92710 0.93333 0.92621 0.86353 0.87522 0.75409 0.88241 0.91749 0.81171 0.81324 0.84691 0.92637 0.89565 0.92081 0.91205 0.79293 0.94009 0.90363 0.92892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.36 9.19 71.98 0.66 -0.70 16 2 C -0.08 -1.10 2.57 -10.79 -0.03 -1.12 16 3 C -0.15 -2.57 8.93 71.98 0.64 -1.92 16 4 C -0.13 -1.56 5.17 29.85 0.15 -1.41 16 5 C 0.51 9.34 7.55 87.66 0.66 10.01 16 6 O -0.58 -14.85 13.97 -3.04 -0.04 -14.90 16 7 N -0.72 -11.59 5.55 -466.79 -2.59 -14.18 16 8 C 0.18 3.28 5.98 85.64 0.51 3.79 16 9 C 0.11 2.12 6.15 42.50 0.26 2.38 16 10 C -0.15 -2.16 9.71 22.37 0.22 -1.95 16 11 C -0.06 -0.92 10.17 22.44 0.23 -0.69 16 12 C -0.20 -4.49 7.89 22.50 0.18 -4.31 16 13 C 0.29 7.93 5.85 133.05 0.78 8.71 16 14 N -0.49 -15.06 5.36 -689.34 -3.70 -18.75 16 15 C 0.06 1.66 6.50 86.44 0.56 2.22 16 16 C -0.14 -4.80 6.67 31.47 0.21 -4.59 16 17 C 0.17 6.77 3.70 46.20 0.17 6.94 16 18 H 0.05 2.25 8.12 -2.39 -0.02 2.23 16 19 N -0.73 -35.43 5.19 -317.24 -1.65 -37.08 16 20 C -0.24 -12.87 9.98 84.03 0.84 -12.03 16 21 H 0.08 3.97 7.83 -2.91 -0.02 3.95 16 22 C -0.07 -4.07 5.50 84.86 0.47 -3.61 16 23 N -0.97 -57.59 13.06 21.65 0.28 -57.31 16 24 Si 0.97 45.30 29.55 68.60 2.03 47.32 16 25 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 26 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 27 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 28 C 0.06 1.86 6.00 86.65 0.52 2.38 16 29 N -0.48 -12.97 10.31 -181.33 -1.87 -14.84 16 30 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 31 H 0.06 0.55 8.14 -2.38 -0.02 0.53 16 32 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 33 H 0.06 1.04 7.95 -2.39 -0.02 1.03 16 34 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 35 H 0.05 1.08 5.95 -2.39 -0.01 1.07 16 36 H 0.05 0.85 8.14 -2.38 -0.02 0.83 16 37 H 0.12 0.81 8.14 -2.38 -0.02 0.79 16 38 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 39 H 0.41 5.40 8.46 -92.71 -0.78 4.61 16 40 H 0.10 1.49 8.04 -2.39 -0.02 1.47 16 41 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 42 H 0.17 1.32 8.06 -2.91 -0.02 1.29 16 43 H 0.17 1.60 8.06 -2.91 -0.02 1.58 16 44 H 0.14 3.11 7.04 -2.91 -0.02 3.09 16 45 H 0.06 1.46 6.66 -2.39 -0.02 1.44 16 46 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 47 H 0.06 2.23 8.05 -2.39 -0.02 2.21 16 48 H 0.07 2.28 8.14 -2.39 -0.02 2.27 16 49 H 0.37 19.39 7.72 -92.71 -0.72 18.67 16 50 H 0.25 14.50 8.31 -92.71 -0.77 13.73 16 51 H 0.08 2.67 8.14 -2.39 -0.02 2.66 16 52 H 0.05 1.76 6.49 -2.39 -0.02 1.74 16 Total: -1.00 -69.93 418.12 -1.07 -71.00 By element: Atomic # 1 Polarization: 35.18 SS G_CDS: -0.58 Total: 34.61 kcal Atomic # 6 Polarization: -2.91 SS G_CDS: 7.04 Total: 4.12 kcal Atomic # 7 Polarization: -132.64 SS G_CDS: -9.52 Total: -142.16 kcal Atomic # 8 Polarization: -14.85 SS G_CDS: -0.04 Total: -14.90 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 2.03 Total: 47.32 kcal Total: -69.93 -1.07 -71.00 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001127814923.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.584 kcal (2) G-P(sol) polarization free energy of solvation -69.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds