Wall clock time and date at job start Wed Apr 1 2020 04:26:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52997 * 109.46902 * 2 1 4 4 C 1.52990 * 109.46971 * 120.00137 * 2 1 3 5 5 C 1.50703 * 109.47398 * 65.00163 * 4 2 1 6 6 O 1.21283 * 119.99488 * 359.97438 * 5 4 2 7 7 N 1.34777 * 120.00290 * 180.02562 * 5 4 2 8 8 C 1.46498 * 119.99828 * 180.27728 * 7 5 4 9 9 C 1.50700 * 109.46769 * 179.72341 * 8 7 5 10 10 C 1.38070 * 119.57500 * 94.73079 * 9 8 7 11 11 C 1.38836 * 119.32616 * 179.75298 * 10 9 8 12 12 C 1.38337 * 118.50613 * 0.50225 * 11 10 9 13 13 C 1.39098 * 119.10154 * 359.73653 * 12 11 10 14 14 N 1.39004 * 119.70495 * 180.02562 * 13 12 11 15 15 C 1.47849 * 110.99900 * 300.85780 * 14 13 12 16 16 C 1.54901 * 104.79682 * 213.63915 * 15 14 13 17 17 C 1.55141 * 101.65525 * 37.07467 * 16 15 14 18 18 H 1.08995 * 110.70407 * 82.72601 * 17 16 15 19 19 N 1.46494 * 110.70564 * 205.96335 * 17 16 15 20 20 C 1.36936 * 119.99993 * 268.59453 * 19 17 16 21 21 H 1.08000 * 120.00009 * 0.02562 * 20 19 17 22 22 C 1.38813 * 120.00109 * 180.02562 * 20 19 17 23 23 N 1.31622 * 120.00099 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 120.00112 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.47094 * 0.02562 * 24 22 20 26 26 H 1.48502 * 109.47054 * 119.99875 * 24 22 20 27 27 H 1.48501 * 109.47352 * 240.00118 * 24 22 20 28 28 C 1.47450 * 110.99867 * 180.02562 * 14 13 12 29 29 N 1.31943 * 119.57129 * 274.99280 * 9 8 7 30 30 H 1.09001 * 109.46842 * 59.99698 * 1 2 3 31 31 H 1.09001 * 109.46850 * 179.97438 * 1 2 3 32 32 H 1.08992 * 109.46928 * 299.99922 * 1 2 3 33 33 H 1.08997 * 109.46547 * 240.00691 * 2 1 3 34 34 H 1.09002 * 109.47224 * 179.97438 * 3 2 1 35 35 H 1.09001 * 109.47568 * 300.00381 * 3 2 1 36 36 H 1.09006 * 109.47224 * 60.00394 * 3 2 1 37 37 H 1.08998 * 109.47508 * 304.99963 * 4 2 1 38 38 H 1.09002 * 109.47337 * 185.00248 * 4 2 1 39 39 H 0.97001 * 119.99727 * 359.97438 * 7 5 4 40 40 H 1.09004 * 109.46963 * 299.72135 * 8 7 5 41 41 H 1.08994 * 109.47567 * 59.72287 * 8 7 5 42 42 H 1.08004 * 120.33029 * 359.97438 * 10 9 8 43 43 H 1.08000 * 120.74923 * 180.26244 * 11 10 9 44 44 H 1.08005 * 120.44931 * 179.71418 * 12 11 10 45 45 H 1.08996 * 110.37661 * 332.47373 * 15 14 13 46 46 H 1.09005 * 110.36667 * 94.81311 * 15 14 13 47 47 H 1.09006 * 110.99233 * 278.97678 * 16 15 14 48 48 H 1.09007 * 110.98924 * 155.16513 * 16 15 14 49 49 H 0.97002 * 120.00221 * 88.59668 * 19 17 16 50 50 H 0.96996 * 120.00168 * 180.02562 * 23 22 20 51 51 H 1.09006 * 109.88160 * 242.66429 * 28 14 13 52 52 H 1.09000 * 109.88496 * 3.68000 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6414 -2.1733 1.1888 6 8 1.0110 -2.5901 0.2402 7 7 1.9845 -3.0085 2.1894 8 6 1.6022 -4.4214 2.1277 9 6 2.1087 -5.1328 3.3559 10 6 1.2757 -5.2873 4.4461 11 6 1.7459 -5.9481 5.5729 12 6 3.0455 -6.4221 5.5661 13 6 3.8309 -6.2267 4.4348 14 7 5.1384 -6.6983 4.4141 15 6 5.9356 -6.0975 5.5047 16 6 7.3641 -5.9606 4.9214 17 6 7.0656 -5.5773 3.4480 18 1 6.8742 -4.5079 3.3593 19 7 8.1693 -5.9818 2.5738 20 6 9.1901 -5.1077 2.3108 21 1 9.1817 -4.1203 2.7483 22 6 10.2356 -5.4908 1.4820 23 7 10.2456 -6.6940 0.9485 24 14 11.6285 -4.2988 1.1238 25 1 11.3830 -3.0211 1.8397 26 1 12.9126 -4.8850 1.5849 27 1 11.6976 -4.0427 -0.3373 28 6 5.7918 -6.3879 3.1292 29 7 3.3441 -5.5955 3.3774 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8899 33 1 1.8933 -0.5137 -0.8901 34 1 3.1300 1.4425 0.0005 35 1 1.6767 1.9564 -0.8899 36 1 1.6767 1.9563 0.8901 37 1 1.6054 -0.2618 2.1369 38 1 3.1264 -0.6443 1.2951 39 1 2.4883 -2.6751 2.9482 40 1 0.5160 -4.5023 2.0829 41 1 2.0374 -4.8772 1.2384 42 1 0.2673 -4.9012 4.4211 43 1 1.1127 -6.0856 6.4369 44 1 3.4450 -6.9367 6.4276 45 1 5.5385 -5.1177 5.7698 46 1 5.9425 -6.7534 6.3753 47 1 7.9012 -6.9075 4.9775 48 1 7.9178 -5.1690 5.4263 49 1 8.1770 -6.8687 2.1812 50 1 10.9764 -6.9618 0.3696 51 1 6.0588 -7.3119 2.6164 52 1 5.1205 -5.7982 2.5049 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001127814925.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:26:48 Heat of formation + Delta-G solvation = 17.029368 kcal Electronic energy + Delta-G solvation = -30162.232387 eV Core-core repulsion = 26161.842717 eV Total energy + Delta-G solvation = -4000.389669 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.92562 -39.95691 -38.34937 -36.06254 -35.05833 -34.30062 -32.69520 -32.17172 -30.60036 -29.19379 -28.65981 -27.53797 -27.29086 -26.06399 -23.73364 -22.96188 -22.28296 -21.17409 -20.75395 -20.05623 -19.95679 -17.77686 -17.30387 -17.01204 -16.54666 -16.24416 -15.95225 -15.70854 -15.33018 -14.88604 -14.51181 -14.34409 -14.08317 -13.96106 -13.72834 -13.39563 -13.31254 -13.24047 -12.89351 -12.59092 -12.48021 -12.42690 -12.30061 -12.08317 -12.04316 -11.88160 -11.39140 -11.34311 -11.15586 -11.08173 -10.89392 -10.84382 -10.67445 -10.30229 -10.11478 -10.05174 -9.97871 -9.75068 -9.61077 -9.35942 -9.24266 -8.92302 -8.02234 -7.00287 -5.80068 -3.09734 0.89336 1.15182 2.50987 2.97617 3.41172 3.46365 3.49033 3.58840 3.75403 4.14619 4.46798 4.50757 4.57352 4.60685 4.69550 4.87911 4.94915 4.98306 5.05730 5.18943 5.23268 5.25375 5.34643 5.35831 5.37753 5.43596 5.46340 5.46818 5.56725 5.65799 5.66397 5.67596 5.78163 5.86380 5.88246 5.92784 6.02086 6.06961 6.10851 6.17118 6.21703 6.28023 6.30741 6.39633 6.53073 6.73052 6.79845 6.99586 7.28624 7.29964 7.66803 7.94033 8.06626 8.37764 9.49194 10.05284 10.40277 11.42333 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.006877 B = 0.003035 C = 0.002229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4070.496613 B = 9222.115972 C =12560.294497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.082 4.082 3 C -0.149 4.149 4 C -0.138 4.138 5 C 0.515 3.485 6 O -0.537 6.537 7 N -0.724 5.724 8 C 0.173 3.827 9 C 0.132 3.868 10 C -0.192 4.192 11 C -0.055 4.055 12 C -0.181 4.181 13 C 0.322 3.678 14 N -0.470 5.470 15 C 0.053 3.947 16 C -0.152 4.152 17 C 0.167 3.833 18 H 0.056 0.944 19 N -0.714 5.714 20 C -0.242 4.242 21 H 0.070 0.930 22 C -0.011 4.011 23 N -0.930 5.930 24 Si 0.907 3.093 25 H -0.280 1.280 26 H -0.291 1.291 27 H -0.291 1.291 28 C 0.022 3.978 29 N -0.503 5.503 30 H 0.051 0.949 31 H 0.074 0.926 32 H 0.046 0.954 33 H 0.079 0.921 34 H 0.056 0.944 35 H 0.057 0.943 36 H 0.054 0.946 37 H 0.092 0.908 38 H 0.096 0.904 39 H 0.402 0.598 40 H 0.083 0.917 41 H 0.086 0.914 42 H 0.132 0.868 43 H 0.135 0.865 44 H 0.136 0.864 45 H 0.049 0.951 46 H 0.080 0.920 47 H 0.077 0.923 48 H 0.070 0.930 49 H 0.386 0.614 50 H 0.256 0.744 51 H 0.081 0.919 52 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.800 9.350 9.404 25.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.100 4.100 3 C -0.206 4.206 4 C -0.178 4.178 5 C 0.302 3.698 6 O -0.414 6.414 7 N -0.376 5.376 8 C 0.049 3.951 9 C -0.007 4.007 10 C -0.214 4.214 11 C -0.081 4.081 12 C -0.204 4.204 13 C 0.089 3.911 14 N -0.186 5.186 15 C -0.073 4.073 16 C -0.193 4.193 17 C 0.055 3.945 18 H 0.074 0.926 19 N -0.354 5.354 20 C -0.373 4.373 21 H 0.088 0.912 22 C -0.208 4.208 23 N -0.578 5.578 24 Si 0.738 3.262 25 H -0.206 1.206 26 H -0.218 1.218 27 H -0.218 1.218 28 C -0.105 4.105 29 N -0.217 5.217 30 H 0.070 0.930 31 H 0.093 0.907 32 H 0.065 0.935 33 H 0.097 0.903 34 H 0.075 0.925 35 H 0.076 0.924 36 H 0.073 0.927 37 H 0.110 0.890 38 H 0.114 0.886 39 H 0.236 0.764 40 H 0.101 0.899 41 H 0.104 0.896 42 H 0.150 0.850 43 H 0.153 0.847 44 H 0.154 0.846 45 H 0.068 0.932 46 H 0.098 0.902 47 H 0.096 0.904 48 H 0.088 0.912 49 H 0.221 0.779 50 H 0.065 0.935 51 H 0.099 0.901 52 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -21.535 8.738 8.001 24.579 hybrid contribution 0.647 0.801 0.818 1.315 sum -20.888 9.539 8.819 24.598 Atomic orbital electron populations 1.21961 0.94819 1.03298 1.00921 1.20865 0.96530 0.95387 0.97259 1.21869 1.01131 0.95727 1.01875 1.21790 1.03276 0.91744 1.00968 1.20741 0.78941 0.88363 0.81724 1.90677 1.39793 1.78046 1.32881 1.45972 1.58409 1.08985 1.24247 1.20082 0.99554 0.80279 0.95144 1.20899 0.89434 0.95737 0.94616 1.21765 1.01479 1.03880 0.94292 1.21414 0.94795 0.94116 0.97802 1.21619 0.94855 1.04431 0.99523 1.20073 0.92916 0.88929 0.89142 1.60701 0.99218 1.51585 1.07143 1.23084 0.94042 0.97172 0.93008 1.23526 0.93485 1.02677 0.99647 1.21305 0.87607 0.96424 0.89156 0.92610 1.42339 1.21580 1.16426 1.55063 1.19265 0.98887 0.95525 1.23646 0.91155 1.24759 0.99044 0.96846 1.00121 1.69673 1.33394 1.18350 1.36368 0.86125 0.82291 0.80054 0.77736 1.20561 1.21832 1.21789 1.23342 0.96329 1.01609 0.89207 1.67351 1.14440 1.11129 1.28793 0.92990 0.90731 0.93487 0.90267 0.92492 0.92388 0.92732 0.88968 0.88607 0.76427 0.89859 0.89559 0.84993 0.84686 0.84573 0.93219 0.90192 0.90397 0.91157 0.77939 0.93455 0.90087 0.88399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 8.93 37.16 0.33 -1.04 16 2 C -0.08 -0.72 2.57 -90.62 -0.23 -0.96 16 3 C -0.15 -1.07 9.19 37.16 0.34 -0.73 16 4 C -0.14 -1.14 5.17 -27.89 -0.14 -1.28 16 5 C 0.52 5.70 7.55 -10.98 -0.08 5.62 16 6 O -0.54 -7.75 13.96 5.55 0.08 -7.67 16 7 N -0.72 -7.22 5.55 -61.47 -0.34 -7.57 16 8 C 0.17 1.88 5.98 -5.19 -0.03 1.85 16 9 C 0.13 1.51 6.15 -82.61 -0.51 1.00 16 10 C -0.19 -1.76 9.71 -39.42 -0.38 -2.14 16 11 C -0.06 -0.49 10.17 -39.32 -0.40 -0.89 16 12 C -0.18 -1.99 9.38 -39.23 -0.37 -2.35 16 13 C 0.32 4.50 6.15 -155.01 -0.95 3.55 16 14 N -0.47 -7.24 5.20 -169.99 -0.88 -8.12 16 15 C 0.05 0.73 6.08 -2.30 -0.01 0.71 16 16 C -0.15 -2.59 6.76 -24.60 -0.17 -2.76 16 17 C 0.17 3.33 3.61 -66.11 -0.24 3.09 16 18 H 0.06 1.14 8.09 -51.93 -0.42 0.72 16 19 N -0.71 -17.81 5.22 -51.67 -0.27 -18.08 16 20 C -0.24 -6.65 9.96 -15.06 -0.15 -6.80 16 21 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 22 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 23 N -0.93 -28.01 13.06 55.49 0.72 -27.29 16 24 Si 0.91 22.24 29.55 -169.99 -5.02 17.22 16 25 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 26 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 27 H -0.29 -7.20 7.11 56.52 0.40 -6.79 16 28 C 0.02 0.40 6.52 -2.84 -0.02 0.39 16 29 N -0.50 -7.15 7.86 -8.67 -0.07 -7.22 16 30 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.07 0.82 5.95 -51.93 -0.31 0.51 16 32 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.08 0.84 7.96 -51.93 -0.41 0.43 16 34 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 37 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.10 0.73 8.14 -51.93 -0.42 0.30 16 39 H 0.40 3.42 8.46 -40.82 -0.35 3.07 16 40 H 0.08 0.80 8.04 -51.93 -0.42 0.38 16 41 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 42 H 0.13 0.89 8.06 -52.48 -0.42 0.47 16 43 H 0.14 0.78 8.06 -52.49 -0.42 0.36 16 44 H 0.14 1.28 7.97 -52.48 -0.42 0.86 16 45 H 0.05 0.64 7.78 -51.93 -0.40 0.24 16 46 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 47 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 48 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 49 H 0.39 10.32 7.56 -40.82 -0.31 10.01 16 50 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 51 H 0.08 1.58 7.72 -51.93 -0.40 1.18 16 52 H 0.10 1.82 5.91 -51.93 -0.31 1.52 16 LS Contribution 418.36 15.07 6.30 6.30 Total: -1.00 -32.41 418.36 -11.38 -43.79 By element: Atomic # 1 Polarization: 20.58 SS G_CDS: -8.79 Total: 11.79 kcal Atomic # 6 Polarization: -0.04 SS G_CDS: -3.11 Total: -3.15 kcal Atomic # 7 Polarization: -67.44 SS G_CDS: -0.84 Total: -68.28 kcal Atomic # 8 Polarization: -7.75 SS G_CDS: 0.08 Total: -7.67 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.22 kcal Total LS contribution 6.30 Total: 6.30 kcal Total: -32.41 -11.38 -43.79 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001127814925.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.817 kcal (2) G-P(sol) polarization free energy of solvation -32.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.788 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds