Wall clock time and date at job start Wed Apr 1 2020 04:27:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47180 * 2 1 4 4 C 1.52998 * 109.47446 * 240.00186 * 2 1 3 5 5 C 1.50698 * 109.46912 * 119.99909 * 2 1 3 6 6 O 1.21280 * 120.00203 * 0.02562 * 5 2 1 7 7 N 1.34775 * 119.99971 * 180.02562 * 5 2 1 8 8 C 1.46500 * 120.00231 * 180.02562 * 7 5 2 9 9 C 1.50698 * 109.47460 * 179.97438 * 8 7 5 10 10 C 1.38065 * 119.57372 * 94.99603 * 9 8 7 11 11 C 1.38837 * 119.33182 * 179.97438 * 10 9 8 12 12 C 1.38342 * 118.50220 * 359.97438 * 11 10 9 13 13 C 1.39093 * 119.09885 * 0.02562 * 12 11 10 14 14 N 1.39004 * 119.70693 * 179.97438 * 13 12 11 15 15 C 1.47903 * 110.99867 * 59.85483 * 14 13 12 16 16 C 1.53989 * 107.06094 * 214.15640 * 15 14 13 17 17 C 1.54599 * 105.14126 * 1.22679 * 16 15 14 18 18 H 1.08997 * 110.72180 * 263.59889 * 17 16 15 19 19 N 1.46503 * 110.72704 * 140.31437 * 17 16 15 20 20 C 1.36928 * 119.99817 * 86.45088 * 19 17 16 21 21 H 1.08004 * 120.00152 * 0.02562 * 20 19 17 22 22 C 1.38812 * 119.99799 * 179.97438 * 20 19 17 23 23 N 1.31614 * 120.00385 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 119.99935 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47299 * 0.02562 * 24 22 20 26 26 H 1.48501 * 109.47128 * 120.00360 * 24 22 20 27 27 H 1.48501 * 109.47431 * 240.00050 * 24 22 20 28 28 C 1.48535 * 111.00074 * 302.46109 * 14 13 12 29 29 N 1.31942 * 119.57206 * 274.97426 * 9 8 7 30 30 H 1.08997 * 109.47026 * 299.99969 * 1 2 3 31 31 H 1.09006 * 109.46635 * 60.00176 * 1 2 3 32 32 H 1.09000 * 109.46808 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.47138 * 179.97438 * 3 2 1 34 34 H 1.08999 * 109.47081 * 300.00163 * 3 2 1 35 35 H 1.09004 * 109.47042 * 59.99704 * 3 2 1 36 36 H 1.09004 * 109.46694 * 300.00047 * 4 2 1 37 37 H 1.08996 * 109.47445 * 59.99983 * 4 2 1 38 38 H 1.08997 * 109.47595 * 180.02562 * 4 2 1 39 39 H 0.96999 * 120.00113 * 359.97438 * 7 5 2 40 40 H 1.08996 * 109.47698 * 59.99277 * 8 7 5 41 41 H 1.09004 * 109.46603 * 299.99640 * 8 7 5 42 42 H 1.08009 * 120.33529 * 359.72843 * 10 9 8 43 43 H 1.07998 * 120.75008 * 179.97438 * 11 10 9 44 44 H 1.07996 * 120.45072 * 180.02562 * 12 11 10 45 45 H 1.09004 * 109.91861 * 333.51034 * 15 14 13 46 46 H 1.08999 * 109.92061 * 94.60266 * 15 14 13 47 47 H 1.09002 * 110.31035 * 120.13742 * 16 15 14 48 48 H 1.08998 * 110.31221 * 242.21199 * 16 15 14 49 49 H 0.96993 * 119.99668 * 266.45532 * 19 17 16 50 50 H 0.96995 * 120.00676 * 179.97438 * 23 22 20 51 51 H 1.08993 * 110.66694 * 278.15040 * 28 14 13 52 52 H 1.09004 * 110.66864 * 41.28523 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 2.0323 -0.7104 1.2305 6 8 1.2442 -1.1717 2.0286 7 7 3.3573 -0.8331 1.4441 8 6 3.8457 -1.5242 2.6399 9 6 5.3527 -1.5241 2.6401 10 6 6.0340 -0.5407 3.3292 11 6 7.4223 -0.5457 3.3264 12 6 8.0775 -1.5442 2.6281 13 6 7.3273 -2.5034 1.9558 14 7 7.9726 -3.5121 1.2497 15 6 8.8322 -4.3182 2.1434 16 6 10.0620 -4.7467 1.3216 17 6 9.8584 -4.1093 -0.0721 18 1 9.4115 -4.8252 -0.7620 19 7 11.1268 -3.6009 -0.6001 20 6 11.9619 -4.4338 -1.2956 21 1 11.6853 -5.4655 -1.4553 22 6 13.1636 -3.9519 -1.7963 23 7 13.5005 -2.6945 -1.6021 24 14 14.3025 -5.0880 -2.7458 25 1 13.6974 -6.4418 -2.8256 26 1 14.5035 -4.5545 -4.1170 27 1 15.6119 -5.1708 -2.0501 28 6 8.8794 -2.9443 0.2194 29 7 6.0039 -2.4641 1.9819 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 -1.0277 -0.0005 33 1 3.1301 1.4425 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6766 1.9564 0.8900 36 1 1.6767 -1.7489 -1.2492 37 1 1.6768 -0.2074 -2.1392 38 1 3.1301 -0.7216 -1.2490 39 1 3.9877 -0.4645 0.8056 40 1 3.4828 -2.5519 2.6394 41 1 3.4819 -1.0109 3.5301 42 1 5.4924 0.2271 3.8618 43 1 7.9784 0.2127 3.8574 44 1 9.1566 -1.5785 2.6052 45 1 9.1469 -3.7177 2.9969 46 1 8.2880 -5.1972 2.4886 47 1 10.9749 -4.3676 1.7811 48 1 10.1029 -5.8328 1.2402 49 1 11.3751 -2.6742 -0.4569 50 1 14.3403 -2.3578 -1.9517 51 1 8.3221 -2.6765 -0.6781 52 1 9.4156 -2.0806 0.6127 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001127852108.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:27:02 Heat of formation + Delta-G solvation = 18.633305 kcal Electronic energy + Delta-G solvation = -30035.531265 eV Core-core repulsion = 26035.211147 eV Total energy + Delta-G solvation = -4000.320117 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.97277 -40.29219 -38.46348 -35.99786 -35.34415 -34.35338 -32.71628 -32.11775 -30.52810 -29.08995 -27.74470 -27.71953 -27.41353 -26.70527 -23.74723 -23.35633 -22.96832 -22.22021 -20.74088 -19.92038 -19.71233 -17.48453 -17.27153 -17.02896 -16.71297 -16.32542 -16.08521 -15.51691 -15.10810 -14.78954 -14.44882 -14.39897 -14.17201 -14.08417 -13.88165 -13.50435 -13.21861 -13.12988 -12.94251 -12.81479 -12.73882 -12.50199 -12.32739 -12.27147 -12.07296 -12.03071 -11.72296 -11.54106 -11.32646 -11.29464 -11.16508 -10.86494 -10.70077 -10.26977 -10.12976 -10.06289 -9.94223 -9.81690 -9.75590 -9.35534 -9.00055 -8.97492 -8.37592 -7.06440 -5.84938 -3.14657 0.73168 1.06398 2.40133 2.86957 3.38984 3.41507 3.46097 3.47429 3.59668 4.19575 4.27155 4.39902 4.48750 4.52745 4.57467 4.74073 4.81609 4.84501 4.95107 5.15033 5.17209 5.21508 5.26034 5.28689 5.28994 5.34800 5.38001 5.44990 5.50761 5.52257 5.56863 5.58317 5.63497 5.73304 5.74904 5.84579 5.88052 5.91607 5.93949 5.98110 6.09764 6.17362 6.27845 6.29187 6.38005 6.66439 6.74359 7.04910 7.17050 7.20707 7.65828 7.95072 7.97152 8.33144 9.44698 9.99358 10.34014 11.37586 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.014624 B = 0.002038 C = 0.001910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1914.230062 B =13737.287227 C =14657.154670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.086 4.086 3 C -0.141 4.141 4 C -0.142 4.142 5 C 0.525 3.475 6 O -0.540 6.540 7 N -0.720 5.720 8 C 0.176 3.824 9 C 0.111 3.889 10 C -0.166 4.166 11 C -0.066 4.066 12 C -0.190 4.190 13 C 0.315 3.685 14 N -0.481 5.481 15 C 0.049 3.951 16 C -0.152 4.152 17 C 0.181 3.819 18 H 0.066 0.934 19 N -0.719 5.719 20 C -0.239 4.239 21 H 0.073 0.927 22 C -0.013 4.013 23 N -0.933 5.933 24 Si 0.908 3.092 25 H -0.279 1.279 26 H -0.291 1.291 27 H -0.292 1.292 28 C 0.040 3.960 29 N -0.452 5.452 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.062 0.938 33 H 0.060 0.940 34 H 0.069 0.931 35 H 0.061 0.939 36 H 0.063 0.937 37 H 0.069 0.931 38 H 0.061 0.939 39 H 0.402 0.598 40 H 0.087 0.913 41 H 0.084 0.916 42 H 0.136 0.864 43 H 0.137 0.863 44 H 0.139 0.861 45 H 0.043 0.957 46 H 0.077 0.923 47 H 0.074 0.926 48 H 0.066 0.934 49 H 0.384 0.616 50 H 0.255 0.745 51 H 0.083 0.917 52 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.364 9.189 8.449 24.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.089 4.089 3 C -0.199 4.199 4 C -0.200 4.200 5 C 0.311 3.689 6 O -0.417 6.417 7 N -0.373 5.373 8 C 0.052 3.948 9 C -0.028 4.028 10 C -0.186 4.186 11 C -0.092 4.092 12 C -0.213 4.213 13 C 0.084 3.916 14 N -0.204 5.204 15 C -0.078 4.078 16 C -0.194 4.194 17 C 0.070 3.930 18 H 0.084 0.916 19 N -0.359 5.359 20 C -0.371 4.371 21 H 0.091 0.909 22 C -0.209 4.209 23 N -0.581 5.581 24 Si 0.739 3.261 25 H -0.204 1.204 26 H -0.218 1.218 27 H -0.219 1.219 28 C -0.087 4.087 29 N -0.162 5.162 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.079 0.921 34 H 0.088 0.912 35 H 0.080 0.920 36 H 0.082 0.918 37 H 0.088 0.912 38 H 0.080 0.920 39 H 0.237 0.763 40 H 0.105 0.895 41 H 0.102 0.898 42 H 0.153 0.847 43 H 0.155 0.845 44 H 0.157 0.843 45 H 0.061 0.939 46 H 0.095 0.905 47 H 0.092 0.908 48 H 0.085 0.915 49 H 0.218 0.782 50 H 0.065 0.935 51 H 0.102 0.898 52 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -22.725 7.727 8.240 25.378 hybrid contribution 2.364 1.036 0.184 2.588 sum -20.361 8.763 8.424 23.713 Atomic orbital electron populations 1.21661 0.91831 1.02940 1.02024 1.20827 0.98120 0.96408 0.93592 1.21879 1.01260 0.93731 1.02981 1.21884 1.01464 1.00765 0.95863 1.20596 0.81750 0.79277 0.87259 1.90696 1.55265 1.48607 1.47095 1.45955 1.07274 1.58721 1.25302 1.20065 0.87043 0.99250 0.88461 1.20968 0.95628 0.91334 0.94875 1.21950 0.94980 0.99997 1.01695 1.21504 0.94177 0.97263 0.96242 1.22773 1.02408 0.96767 0.99396 1.19879 0.89015 0.90796 0.91912 1.61560 1.27798 1.18661 1.12350 1.22958 0.93534 0.97089 0.94240 1.23228 0.95911 1.01524 0.98708 1.21036 0.86610 0.92758 0.92624 0.91625 1.42357 1.17254 1.11708 1.64602 1.19285 0.98281 0.93180 1.26306 0.90884 1.24760 0.98341 0.96310 1.01461 1.69661 1.24109 1.13548 1.50781 0.86105 0.80770 0.79803 0.79438 1.20440 1.21820 1.21866 1.23608 0.93255 0.97871 0.93973 1.67115 1.09193 1.22973 1.16935 0.91961 0.91966 0.91856 0.92121 0.91181 0.92016 0.91826 0.91208 0.91967 0.76304 0.89522 0.89776 0.84651 0.84538 0.84323 0.93871 0.90501 0.90756 0.91525 0.78235 0.93493 0.89814 0.92980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.97 7.76 37.16 0.29 -0.68 16 2 C -0.09 -0.66 0.87 -155.66 -0.14 -0.80 16 3 C -0.14 -0.83 8.37 37.16 0.31 -0.52 16 4 C -0.14 -0.99 8.37 37.16 0.31 -0.68 16 5 C 0.52 5.47 6.48 -10.99 -0.07 5.40 16 6 O -0.54 -7.53 15.98 5.56 0.09 -7.44 16 7 N -0.72 -6.71 5.33 -61.47 -0.33 -7.04 16 8 C 0.18 1.76 5.98 -5.19 -0.03 1.72 16 9 C 0.11 1.22 6.15 -82.61 -0.51 0.71 16 10 C -0.17 -1.51 9.71 -39.42 -0.38 -1.89 16 11 C -0.07 -0.63 10.17 -39.32 -0.40 -1.03 16 12 C -0.19 -2.32 7.89 -39.23 -0.31 -2.63 16 13 C 0.31 4.49 5.85 -155.01 -0.91 3.59 16 14 N -0.48 -7.50 5.36 -169.24 -0.91 -8.41 16 15 C 0.05 0.71 6.50 -2.76 -0.02 0.70 16 16 C -0.15 -2.59 6.67 -25.37 -0.17 -2.76 16 17 C 0.18 3.49 3.70 -66.06 -0.24 3.25 16 18 H 0.07 1.32 8.12 -51.93 -0.42 0.90 16 19 N -0.72 -17.18 5.19 -51.62 -0.27 -17.45 16 20 C -0.24 -6.41 9.98 -15.06 -0.15 -6.56 16 21 H 0.07 1.91 7.83 -52.48 -0.41 1.50 16 22 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 23 N -0.93 -27.30 13.06 55.49 0.72 -26.57 16 24 Si 0.91 21.87 29.55 -169.99 -5.02 16.85 16 25 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 26 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 27 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 28 C 0.04 0.67 6.00 -1.89 -0.01 0.66 16 29 N -0.45 -6.32 10.31 -8.67 -0.09 -6.41 16 30 H 0.06 0.51 8.10 -51.93 -0.42 0.09 16 31 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 32 H 0.06 0.55 8.10 -51.93 -0.42 0.13 16 33 H 0.06 0.33 7.56 -51.93 -0.39 -0.07 16 34 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 35 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.06 0.43 7.56 -51.93 -0.39 0.04 16 39 H 0.40 3.30 7.30 -40.82 -0.30 3.00 16 40 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 41 H 0.08 0.74 8.04 -51.93 -0.42 0.32 16 42 H 0.14 0.87 8.06 -52.48 -0.42 0.45 16 43 H 0.14 0.96 8.06 -52.49 -0.42 0.53 16 44 H 0.14 1.68 7.04 -52.49 -0.37 1.31 16 45 H 0.04 0.59 6.66 -51.93 -0.35 0.24 16 46 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 47 H 0.07 1.35 8.05 -51.93 -0.42 0.94 16 48 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 49 H 0.38 9.69 7.72 -40.82 -0.32 9.37 16 50 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 51 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 52 H 0.05 0.86 6.49 -51.93 -0.34 0.52 16 LS Contribution 418.32 15.07 6.30 6.30 Total: -1.00 -31.92 418.32 -10.77 -42.69 By element: Atomic # 1 Polarization: 18.19 SS G_CDS: -8.75 Total: 9.44 kcal Atomic # 6 Polarization: 0.55 SS G_CDS: -2.52 Total: -1.97 kcal Atomic # 7 Polarization: -65.01 SS G_CDS: -0.87 Total: -65.88 kcal Atomic # 8 Polarization: -7.53 SS G_CDS: 0.09 Total: -7.44 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 6.30 Total: 6.30 kcal Total: -31.92 -10.77 -42.69 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001127852108.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.321 kcal (2) G-P(sol) polarization free energy of solvation -31.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.688 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds