Wall clock time and date at job start Wed Apr 1 2020 04:27:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47180 * 2 1 4 4 C 1.52998 * 109.47446 * 240.00186 * 2 1 3 5 5 C 1.50698 * 109.46912 * 119.99909 * 2 1 3 6 6 O 1.21280 * 120.00203 * 0.02562 * 5 2 1 7 7 N 1.34775 * 119.99971 * 180.02562 * 5 2 1 8 8 C 1.46500 * 120.00231 * 180.02562 * 7 5 2 9 9 C 1.50698 * 109.47460 * 179.97438 * 8 7 5 10 10 C 1.38065 * 119.57372 * 94.99603 * 9 8 7 11 11 C 1.38837 * 119.33182 * 179.97438 * 10 9 8 12 12 C 1.38342 * 118.50220 * 359.97438 * 11 10 9 13 13 C 1.39093 * 119.09885 * 0.02562 * 12 11 10 14 14 N 1.39004 * 119.70693 * 179.97438 * 13 12 11 15 15 C 1.47903 * 110.99867 * 59.85483 * 14 13 12 16 16 C 1.53989 * 107.06094 * 214.15640 * 15 14 13 17 17 C 1.54599 * 105.14126 * 1.22679 * 16 15 14 18 18 H 1.08997 * 110.72180 * 263.59889 * 17 16 15 19 19 N 1.46503 * 110.72704 * 140.31437 * 17 16 15 20 20 C 1.36928 * 119.99817 * 86.45088 * 19 17 16 21 21 H 1.08004 * 120.00152 * 0.02562 * 20 19 17 22 22 C 1.38812 * 119.99799 * 179.97438 * 20 19 17 23 23 N 1.31614 * 120.00385 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 119.99935 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47299 * 0.02562 * 24 22 20 26 26 H 1.48501 * 109.47128 * 120.00360 * 24 22 20 27 27 H 1.48501 * 109.47431 * 240.00050 * 24 22 20 28 28 C 1.48535 * 111.00074 * 302.46109 * 14 13 12 29 29 N 1.31942 * 119.57206 * 274.97426 * 9 8 7 30 30 H 1.08997 * 109.47026 * 299.99969 * 1 2 3 31 31 H 1.09006 * 109.46635 * 60.00176 * 1 2 3 32 32 H 1.09000 * 109.46808 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.47138 * 179.97438 * 3 2 1 34 34 H 1.08999 * 109.47081 * 300.00163 * 3 2 1 35 35 H 1.09004 * 109.47042 * 59.99704 * 3 2 1 36 36 H 1.09004 * 109.46694 * 300.00047 * 4 2 1 37 37 H 1.08996 * 109.47445 * 59.99983 * 4 2 1 38 38 H 1.08997 * 109.47595 * 180.02562 * 4 2 1 39 39 H 0.96999 * 120.00113 * 359.97438 * 7 5 2 40 40 H 1.08996 * 109.47698 * 59.99277 * 8 7 5 41 41 H 1.09004 * 109.46603 * 299.99640 * 8 7 5 42 42 H 1.08009 * 120.33529 * 359.72843 * 10 9 8 43 43 H 1.07998 * 120.75008 * 179.97438 * 11 10 9 44 44 H 1.07996 * 120.45072 * 180.02562 * 12 11 10 45 45 H 1.09004 * 109.91861 * 333.51034 * 15 14 13 46 46 H 1.08999 * 109.92061 * 94.60266 * 15 14 13 47 47 H 1.09002 * 110.31035 * 120.13742 * 16 15 14 48 48 H 1.08998 * 110.31221 * 242.21199 * 16 15 14 49 49 H 0.96993 * 119.99668 * 266.45532 * 19 17 16 50 50 H 0.96995 * 120.00676 * 179.97438 * 23 22 20 51 51 H 1.08993 * 110.66694 * 278.15040 * 28 14 13 52 52 H 1.09004 * 110.66864 * 41.28523 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 2.0323 -0.7104 1.2305 6 8 1.2442 -1.1717 2.0286 7 7 3.3573 -0.8331 1.4441 8 6 3.8457 -1.5242 2.6399 9 6 5.3527 -1.5241 2.6401 10 6 6.0340 -0.5407 3.3292 11 6 7.4223 -0.5457 3.3264 12 6 8.0775 -1.5442 2.6281 13 6 7.3273 -2.5034 1.9558 14 7 7.9726 -3.5121 1.2497 15 6 8.8322 -4.3182 2.1434 16 6 10.0620 -4.7467 1.3216 17 6 9.8584 -4.1093 -0.0721 18 1 9.4115 -4.8252 -0.7620 19 7 11.1268 -3.6009 -0.6001 20 6 11.9619 -4.4338 -1.2956 21 1 11.6853 -5.4655 -1.4553 22 6 13.1636 -3.9519 -1.7963 23 7 13.5005 -2.6945 -1.6021 24 14 14.3025 -5.0880 -2.7458 25 1 13.6974 -6.4418 -2.8256 26 1 14.5035 -4.5545 -4.1170 27 1 15.6119 -5.1708 -2.0501 28 6 8.8794 -2.9443 0.2194 29 7 6.0039 -2.4641 1.9819 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 -1.0277 -0.0005 33 1 3.1301 1.4425 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6766 1.9564 0.8900 36 1 1.6767 -1.7489 -1.2492 37 1 1.6768 -0.2074 -2.1392 38 1 3.1301 -0.7216 -1.2490 39 1 3.9877 -0.4645 0.8056 40 1 3.4828 -2.5519 2.6394 41 1 3.4819 -1.0109 3.5301 42 1 5.4924 0.2271 3.8618 43 1 7.9784 0.2127 3.8574 44 1 9.1566 -1.5785 2.6052 45 1 9.1469 -3.7177 2.9969 46 1 8.2880 -5.1972 2.4886 47 1 10.9749 -4.3676 1.7811 48 1 10.1029 -5.8328 1.2402 49 1 11.3751 -2.6742 -0.4569 50 1 14.3403 -2.3578 -1.9517 51 1 8.3221 -2.6765 -0.6781 52 1 9.4156 -2.0806 0.6127 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001127852108.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:27:01 Heat of formation + Delta-G solvation = -2.520569 kcal Electronic energy + Delta-G solvation = -30036.448565 eV Core-core repulsion = 26035.211147 eV Total energy + Delta-G solvation = -4001.237418 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.92538 -41.13451 -39.65972 -36.71937 -36.47279 -35.78712 -33.81492 -33.42246 -32.00291 -30.30220 -29.11077 -28.23832 -28.22226 -27.51100 -25.55335 -24.31849 -24.02376 -23.05777 -21.88664 -21.41317 -20.48833 -19.27331 -18.39573 -17.95344 -17.54459 -17.16934 -17.09247 -16.69435 -16.27356 -16.14589 -15.58093 -15.43550 -15.19288 -14.92723 -14.78650 -14.73112 -14.63300 -14.27936 -14.02683 -13.65884 -13.48324 -13.32286 -13.25775 -13.08837 -13.06563 -13.00783 -12.89484 -12.75659 -12.70223 -12.63218 -12.29624 -12.10200 -11.90954 -11.86501 -11.74839 -11.57398 -11.01170 -10.95813 -10.85011 -10.73449 -10.18602 -9.90762 -9.51645 -9.04590 -7.95750 -5.24760 -0.14598 0.21706 1.48370 1.49167 1.58872 1.59421 2.07952 2.35793 2.57629 2.72873 3.30659 3.37722 3.60352 3.62687 3.75225 3.83078 3.91696 3.93269 3.94100 4.00778 4.12695 4.19880 4.22885 4.26720 4.30589 4.40540 4.51650 4.59820 4.67641 4.69487 4.70475 4.72180 4.82233 4.90740 4.91851 4.93828 4.95058 5.00905 5.11211 5.11569 5.20920 5.24332 5.28890 5.32019 5.32505 5.37243 5.43640 5.50203 5.68597 6.08777 6.26481 6.43803 7.03274 7.15972 7.33094 8.04904 8.29714 9.27563 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.014624 B = 0.002038 C = 0.001910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1914.230062 B =13737.287227 C =14657.154670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.083 4.083 3 C -0.138 4.138 4 C -0.140 4.140 5 C 0.521 3.479 6 O -0.581 6.581 7 N -0.712 5.712 8 C 0.180 3.820 9 C 0.107 3.893 10 C -0.148 4.148 11 C -0.057 4.057 12 C -0.197 4.197 13 C 0.287 3.713 14 N -0.488 5.488 15 C 0.058 3.942 16 C -0.142 4.142 17 C 0.174 3.826 18 H 0.055 0.945 19 N -0.728 5.728 20 C -0.237 4.237 21 H 0.076 0.924 22 C -0.073 4.073 23 N -0.967 5.967 24 Si 0.970 3.030 25 H -0.267 1.267 26 H -0.294 1.294 27 H -0.294 1.294 28 C 0.055 3.945 29 N -0.480 5.480 30 H 0.053 0.947 31 H 0.084 0.916 32 H 0.046 0.954 33 H 0.066 0.934 34 H 0.086 0.914 35 H 0.059 0.941 36 H 0.049 0.951 37 H 0.088 0.912 38 H 0.062 0.938 39 H 0.409 0.591 40 H 0.065 0.935 41 H 0.101 0.899 42 H 0.171 0.829 43 H 0.170 0.830 44 H 0.136 0.864 45 H 0.056 0.944 46 H 0.086 0.914 47 H 0.060 0.940 48 H 0.069 0.931 49 H 0.375 0.625 50 H 0.251 0.749 51 H 0.078 0.922 52 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.123 10.439 9.130 26.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.086 4.086 3 C -0.195 4.195 4 C -0.198 4.198 5 C 0.309 3.691 6 O -0.460 6.460 7 N -0.364 5.364 8 C 0.055 3.945 9 C -0.033 4.033 10 C -0.168 4.168 11 C -0.083 4.083 12 C -0.220 4.220 13 C 0.057 3.943 14 N -0.211 5.211 15 C -0.069 4.069 16 C -0.182 4.182 17 C 0.064 3.936 18 H 0.073 0.927 19 N -0.368 5.368 20 C -0.369 4.369 21 H 0.094 0.906 22 C -0.265 4.265 23 N -0.618 5.618 24 Si 0.800 3.200 25 H -0.191 1.191 26 H -0.222 1.222 27 H -0.221 1.221 28 C -0.072 4.072 29 N -0.191 5.191 30 H 0.072 0.928 31 H 0.103 0.897 32 H 0.065 0.935 33 H 0.085 0.915 34 H 0.105 0.895 35 H 0.078 0.922 36 H 0.068 0.932 37 H 0.107 0.893 38 H 0.081 0.919 39 H 0.245 0.755 40 H 0.084 0.916 41 H 0.119 0.881 42 H 0.188 0.812 43 H 0.187 0.813 44 H 0.154 0.846 45 H 0.074 0.926 46 H 0.104 0.896 47 H 0.079 0.921 48 H 0.088 0.912 49 H 0.207 0.793 50 H 0.060 0.940 51 H 0.096 0.904 52 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -23.509 8.953 8.929 26.693 hybrid contribution 2.463 0.663 0.042 2.551 sum -21.046 9.616 8.970 24.817 Atomic orbital electron populations 1.21664 0.91898 1.02077 1.02712 1.20868 0.98067 0.97386 0.92326 1.21879 1.01677 0.92194 1.03745 1.21888 1.01469 1.00149 0.96282 1.21154 0.81608 0.78718 0.87619 1.90675 1.56220 1.50442 1.48691 1.45918 1.07193 1.58088 1.25223 1.20023 0.86641 0.98451 0.89342 1.21141 0.95781 0.91397 0.94937 1.22298 0.94936 0.99504 1.00074 1.21879 0.94522 0.96809 0.95120 1.22774 1.02237 0.97194 0.99818 1.19811 0.89306 0.91584 0.93559 1.61442 1.27365 1.19586 1.12735 1.22876 0.92389 0.97614 0.94004 1.23006 0.96576 1.01407 0.97258 1.21161 0.85349 0.93766 0.93316 0.92717 1.42459 1.18502 1.11064 1.64801 1.19612 0.98471 0.93545 1.25291 0.90626 1.25512 1.00076 0.97719 1.03222 1.69799 1.24436 1.15148 1.52425 0.85117 0.78647 0.78575 0.77686 1.19144 1.22155 1.22120 1.23328 0.92720 0.96700 0.94461 1.67003 1.09339 1.24545 1.18221 0.92801 0.89690 0.93521 0.91456 0.89515 0.92184 0.93210 0.89299 0.91913 0.75506 0.91644 0.88143 0.81179 0.81270 0.84634 0.92612 0.89572 0.92074 0.91216 0.79291 0.94005 0.90377 0.92877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.81 7.76 71.98 0.56 -1.26 16 2 C -0.08 -1.18 0.87 -52.93 -0.05 -1.22 16 3 C -0.14 -1.30 8.37 71.98 0.60 -0.70 16 4 C -0.14 -1.78 8.37 71.98 0.60 -1.18 16 5 C 0.52 10.58 6.48 87.66 0.57 11.15 16 6 O -0.58 -16.34 15.98 -3.03 -0.05 -16.39 16 7 N -0.71 -12.52 5.33 -466.80 -2.49 -15.01 16 8 C 0.18 3.39 5.98 85.63 0.51 3.90 16 9 C 0.11 2.15 6.15 42.50 0.26 2.41 16 10 C -0.15 -2.18 9.71 22.37 0.22 -1.96 16 11 C -0.06 -0.91 10.17 22.44 0.23 -0.68 16 12 C -0.20 -4.45 7.89 22.50 0.18 -4.27 16 13 C 0.29 7.94 5.85 133.04 0.78 8.71 16 14 N -0.49 -15.05 5.36 -689.35 -3.70 -18.74 16 15 C 0.06 1.66 6.50 86.44 0.56 2.22 16 16 C -0.14 -4.79 6.67 31.47 0.21 -4.58 16 17 C 0.17 6.77 3.70 46.20 0.17 6.94 16 18 H 0.05 2.24 8.12 -2.39 -0.02 2.22 16 19 N -0.73 -35.38 5.19 -317.24 -1.65 -37.03 16 20 C -0.24 -12.81 9.98 84.03 0.84 -11.97 16 21 H 0.08 3.96 7.83 -2.91 -0.02 3.94 16 22 C -0.07 -4.08 5.50 84.86 0.47 -3.61 16 23 N -0.97 -57.52 13.06 21.65 0.28 -57.24 16 24 Si 0.97 45.27 29.55 68.60 2.03 47.30 16 25 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 26 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 27 H -0.29 -13.72 7.11 99.48 0.71 -13.02 16 28 C 0.06 1.86 6.00 86.65 0.52 2.38 16 29 N -0.48 -13.02 10.31 -181.34 -1.87 -14.89 16 30 H 0.05 0.86 8.10 -2.39 -0.02 0.84 16 31 H 0.08 0.81 8.14 -2.38 -0.02 0.79 16 32 H 0.05 0.82 8.10 -2.39 -0.02 0.80 16 33 H 0.07 0.55 7.56 -2.39 -0.02 0.53 16 34 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 35 H 0.06 0.60 8.14 -2.38 -0.02 0.58 16 36 H 0.05 0.77 8.14 -2.38 -0.02 0.75 16 37 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 38 H 0.06 0.79 7.56 -2.39 -0.02 0.77 16 39 H 0.41 6.11 7.30 -92.71 -0.68 5.44 16 40 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 41 H 0.10 1.57 8.04 -2.38 -0.02 1.55 16 42 H 0.17 1.35 8.06 -2.91 -0.02 1.32 16 43 H 0.17 1.59 8.06 -2.91 -0.02 1.57 16 44 H 0.14 3.11 7.04 -2.91 -0.02 3.08 16 45 H 0.06 1.46 6.66 -2.38 -0.02 1.44 16 46 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 47 H 0.06 2.23 8.05 -2.39 -0.02 2.21 16 48 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 49 H 0.37 19.36 7.72 -92.71 -0.72 18.65 16 50 H 0.25 14.49 8.31 -92.71 -0.77 13.72 16 51 H 0.08 2.67 8.14 -2.39 -0.02 2.65 16 52 H 0.05 1.76 6.49 -2.38 -0.02 1.74 16 Total: -1.00 -70.21 418.32 -0.68 -70.89 By element: Atomic # 1 Polarization: 35.31 SS G_CDS: -0.47 Total: 34.84 kcal Atomic # 6 Polarization: -0.95 SS G_CDS: 7.23 Total: 6.28 kcal Atomic # 7 Polarization: -133.50 SS G_CDS: -9.42 Total: -142.91 kcal Atomic # 8 Polarization: -16.34 SS G_CDS: -0.05 Total: -16.39 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 2.03 Total: 47.30 kcal Total: -70.21 -0.68 -70.89 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001127852108.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.371 kcal (2) G-P(sol) polarization free energy of solvation -70.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds