Wall clock time and date at job start Wed Apr 1 2020 04:27:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47593 * 2 1 4 4 C 1.53000 * 109.47353 * 120.00389 * 2 1 3 5 5 C 1.50700 * 109.47492 * 174.99761 * 4 2 1 6 6 O 1.21280 * 119.99460 * 359.97438 * 5 4 2 7 7 N 1.34771 * 119.99942 * 180.02562 * 5 4 2 8 8 C 1.46509 * 119.99750 * 180.02562 * 7 5 4 9 9 H 1.09005 * 110.27338 * 327.08435 * 8 7 5 10 10 C 1.54590 * 110.30808 * 89.27994 * 8 7 5 11 11 C 1.54938 * 102.92263 * 140.87476 * 10 8 7 12 12 N 1.48540 * 103.22644 * 322.58374 * 11 10 8 13 13 C 1.39000 * 111.00140 * 159.71925 * 12 11 10 14 14 C 1.39135 * 119.70622 * 62.60681 * 13 12 11 15 15 C 1.38302 * 119.09426 * 180.27609 * 14 13 12 16 16 C 1.38875 * 118.50566 * 359.48331 * 15 14 13 17 17 C 1.38026 * 119.33180 * 0.53619 * 16 15 14 18 18 C 1.50697 * 119.57331 * 179.72514 * 17 16 15 19 19 N 1.46501 * 109.46983 * 94.98041 * 18 17 16 20 20 C 1.36936 * 119.99904 * 180.02562 * 19 18 17 21 21 H 1.08004 * 120.00103 * 359.97438 * 20 19 18 22 22 C 1.38810 * 119.99948 * 180.02562 * 20 19 18 23 23 N 1.31612 * 120.00205 * 359.97438 * 22 20 19 24 24 Si 1.86806 * 119.99820 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.47152 * 90.00105 * 24 22 20 26 26 H 1.48503 * 109.46800 * 209.99995 * 24 22 20 27 27 H 1.48493 * 109.47214 * 329.99568 * 24 22 20 28 28 N 1.31965 * 120.85315 * 359.70742 * 17 16 15 29 29 C 1.47911 * 105.81521 * 39.20737 * 12 11 10 30 30 H 1.09005 * 109.46566 * 299.99877 * 1 2 3 31 31 H 1.08999 * 109.46849 * 59.99272 * 1 2 3 32 32 H 1.09000 * 109.47290 * 179.97438 * 1 2 3 33 33 H 1.09005 * 109.47030 * 239.99862 * 2 1 3 34 34 H 1.09001 * 109.47203 * 300.00900 * 3 2 1 35 35 H 1.09005 * 109.47045 * 59.99871 * 3 2 1 36 36 H 1.08996 * 109.47584 * 179.97438 * 3 2 1 37 37 H 1.08999 * 109.46885 * 54.99428 * 4 2 1 38 38 H 1.09004 * 109.46855 * 295.00061 * 4 2 1 39 39 H 0.96998 * 120.00749 * 359.97438 * 7 5 4 40 40 H 1.08999 * 110.73042 * 259.22860 * 10 8 7 41 41 H 1.08997 * 110.72770 * 22.33652 * 10 8 7 42 42 H 1.08997 * 110.67114 * 204.15448 * 11 10 8 43 43 H 1.08999 * 110.66976 * 81.01437 * 11 10 8 44 44 H 1.08002 * 120.44854 * 359.97438 * 14 13 12 45 45 H 1.08000 * 120.73999 * 179.72440 * 15 14 13 46 46 H 1.08002 * 120.33283 * 180.26519 * 16 15 14 47 47 H 1.08999 * 109.47204 * 214.98576 * 18 17 16 48 48 H 1.09006 * 109.47110 * 334.97859 * 18 17 16 49 49 H 0.96999 * 120.00036 * 359.97438 * 19 18 17 50 50 H 0.96998 * 120.00755 * 179.97438 * 23 22 20 51 51 H 1.08993 * 109.91677 * 94.02511 * 29 12 11 52 52 H 1.09002 * 109.91103 * 215.11662 * 29 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 3.5420 -0.8295 1.1888 6 8 4.1449 -0.3749 0.2398 7 7 4.2148 -1.4324 2.1889 8 6 5.6750 -1.5371 2.1304 9 1 6.0050 -1.6434 1.0970 10 6 6.3284 -0.2954 2.7795 11 6 7.5386 -0.8970 3.5372 12 7 7.0110 -2.1870 4.0509 13 6 8.0465 -3.0617 4.3585 14 6 8.9600 -2.7261 5.3529 15 6 9.9888 -3.6032 5.6447 16 6 10.0637 -4.7959 4.9371 17 6 9.1233 -5.0644 3.9631 18 6 9.2031 -6.3542 3.1878 19 7 8.3343 -7.3543 3.8131 20 6 8.2438 -8.6122 3.2795 21 1 8.8127 -8.8669 2.3975 22 6 7.4202 -9.5598 3.8717 23 7 6.7266 -9.2494 4.9463 24 14 7.2963 -11.2755 3.1433 25 1 8.3271 -12.1499 3.7582 26 1 5.9473 -11.8330 3.4166 27 1 7.5158 -11.2075 1.6763 28 7 8.1551 -4.2065 3.7023 29 6 6.1592 -2.7325 2.9717 30 1 -0.3633 0.5139 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3634 -1.0277 -0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 1.6767 1.9564 -0.8899 35 1 1.6768 1.9563 0.8900 36 1 3.1301 1.4424 0.0005 37 1 1.6054 -1.7198 1.2950 38 1 1.7517 -0.1584 2.1369 39 1 3.7326 -1.7963 2.9477 40 1 6.6619 0.4082 2.0168 41 1 5.6377 0.1866 3.4713 42 1 7.8379 -0.2486 4.3606 43 1 8.3730 -1.0664 2.8566 44 1 8.8698 -1.7913 5.8862 45 1 10.7153 -3.3675 6.4083 46 1 10.8524 -5.5041 5.1439 47 1 8.8788 -6.1818 2.1615 48 1 10.2316 -6.7152 3.1880 49 1 7.8236 -7.1258 4.6055 50 1 6.1507 -9.9113 5.3599 51 1 6.7393 -3.4138 2.3494 52 1 5.3063 -3.2577 3.4015 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001128077107.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:27:38 Heat of formation + Delta-G solvation = 17.615796 kcal Electronic energy + Delta-G solvation = -29951.260104 eV Core-core repulsion = 25950.895864 eV Total energy + Delta-G solvation = -4000.364240 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -40.82659 -40.01725 -38.38678 -35.93685 -34.99640 -34.32680 -32.42068 -32.16100 -30.62728 -29.25724 -28.98307 -27.56510 -27.33224 -25.79816 -23.40685 -23.11788 -21.98693 -21.31361 -20.89270 -20.60913 -20.03143 -17.63374 -17.28100 -16.97184 -16.65331 -16.13834 -15.79885 -15.73347 -14.87309 -14.81656 -14.60230 -14.34170 -14.14671 -14.07282 -13.72748 -13.39397 -13.25343 -13.04416 -12.76473 -12.57262 -12.53432 -12.32027 -12.21759 -12.20561 -12.08303 -11.99601 -11.70378 -11.40220 -11.35358 -11.13333 -11.07928 -10.95121 -10.88480 -10.81814 -10.11903 -9.90900 -9.83578 -9.78612 -9.43255 -9.25855 -9.05568 -8.89353 -8.01739 -6.94221 -5.75911 -3.05817 1.33671 1.52141 2.47295 2.96400 3.44070 3.48885 3.50967 3.56628 3.99246 4.28296 4.38283 4.45668 4.57009 4.61959 4.63893 4.76341 4.90207 5.00667 5.04956 5.09367 5.20146 5.22960 5.28216 5.29337 5.30686 5.37126 5.41374 5.43578 5.55804 5.59790 5.61885 5.62772 5.67827 5.73345 5.78169 5.87652 5.91194 6.06053 6.08855 6.11767 6.14655 6.17985 6.35899 6.38967 6.43760 6.53537 6.66198 6.80538 7.23608 7.33225 7.69036 8.06718 8.30936 8.40954 9.52763 10.07616 10.43575 11.46650 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.008937 B = 0.002442 C = 0.001992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3132.463895 B =11464.270483 C =14055.391247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.081 4.081 3 C -0.153 4.153 4 C -0.139 4.139 5 C 0.514 3.486 6 O -0.539 6.539 7 N -0.722 5.722 8 C 0.135 3.865 9 H 0.098 0.902 10 C -0.132 4.132 11 C 0.045 3.955 12 N -0.458 5.458 13 C 0.293 3.707 14 C -0.187 4.187 15 C -0.061 4.061 16 C -0.180 4.180 17 C 0.163 3.837 18 C 0.198 3.802 19 N -0.722 5.722 20 C -0.240 4.240 21 H 0.072 0.928 22 C -0.013 4.013 23 N -0.932 5.932 24 Si 0.909 3.091 25 H -0.289 1.289 26 H -0.291 1.291 27 H -0.281 1.281 28 N -0.501 5.501 29 C 0.030 3.970 30 H 0.054 0.946 31 H 0.057 0.943 32 H 0.055 0.945 33 H 0.078 0.922 34 H 0.051 0.949 35 H 0.046 0.954 36 H 0.074 0.926 37 H 0.094 0.906 38 H 0.093 0.907 39 H 0.403 0.597 40 H 0.080 0.920 41 H 0.081 0.919 42 H 0.091 0.909 43 H 0.056 0.944 44 H 0.130 0.870 45 H 0.133 0.867 46 H 0.135 0.865 47 H 0.037 0.963 48 H 0.037 0.963 49 H 0.385 0.615 50 H 0.255 0.745 51 H 0.097 0.903 52 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.634 23.621 -2.821 24.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.100 4.100 3 C -0.210 4.210 4 C -0.179 4.179 5 C 0.301 3.699 6 O -0.416 6.416 7 N -0.374 5.374 8 C 0.029 3.971 9 H 0.116 0.884 10 C -0.171 4.171 11 C -0.081 4.081 12 N -0.177 5.177 13 C 0.062 3.938 14 C -0.210 4.210 15 C -0.087 4.087 16 C -0.201 4.201 17 C 0.025 3.975 18 C 0.070 3.930 19 N -0.367 5.367 20 C -0.371 4.371 21 H 0.090 0.910 22 C -0.209 4.209 23 N -0.580 5.580 24 Si 0.740 3.260 25 H -0.217 1.217 26 H -0.218 1.218 27 H -0.207 1.207 28 N -0.215 5.215 29 C -0.098 4.098 30 H 0.073 0.927 31 H 0.076 0.924 32 H 0.074 0.926 33 H 0.096 0.904 34 H 0.070 0.930 35 H 0.065 0.935 36 H 0.093 0.907 37 H 0.113 0.887 38 H 0.111 0.889 39 H 0.238 0.762 40 H 0.099 0.901 41 H 0.099 0.901 42 H 0.109 0.891 43 H 0.075 0.925 44 H 0.148 0.852 45 H 0.150 0.850 46 H 0.153 0.847 47 H 0.055 0.945 48 H 0.055 0.945 49 H 0.219 0.781 50 H 0.065 0.935 51 H 0.115 0.885 52 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -5.120 23.698 -3.811 24.543 hybrid contribution 0.407 -1.117 0.602 1.333 sum -4.714 22.581 -3.208 23.290 Atomic orbital electron populations 1.21869 0.94971 1.01823 1.01924 1.20860 0.95051 0.96861 0.97226 1.21957 1.03109 0.95012 1.00927 1.21800 0.91899 1.03210 1.00976 1.20758 0.90206 0.77062 0.81893 1.90664 1.70492 1.47220 1.33194 1.46175 1.07209 1.59996 1.23979 1.21858 0.79964 0.94468 1.00803 0.88365 1.22940 0.96947 0.97596 0.99624 1.23288 0.96788 0.89445 0.98602 1.62077 1.14862 1.03240 1.37534 1.19874 0.89950 0.91227 0.92794 1.21401 0.96991 1.02198 1.00373 1.21406 0.96693 0.93068 0.97519 1.21940 1.01855 0.98065 0.98263 1.21499 0.88306 0.94534 0.93171 1.19624 0.95235 0.83506 0.94603 1.42212 1.52268 1.08708 1.33521 1.19224 1.21618 0.87668 1.08549 0.90963 1.24757 0.99640 0.98478 0.98002 1.69676 1.31983 1.34257 1.22080 0.86159 0.76960 0.84473 0.78409 1.21679 1.21764 1.20690 1.67365 1.23291 1.03529 1.27281 1.23140 0.98247 0.95991 0.92386 0.92674 0.92423 0.92588 0.90395 0.93026 0.93460 0.90714 0.88745 0.88913 0.76166 0.90113 0.90060 0.89112 0.92529 0.85215 0.84955 0.84712 0.94518 0.94543 0.78099 0.93491 0.88531 0.89233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 9.19 37.16 0.34 -0.60 16 2 C -0.08 -0.65 2.57 -90.62 -0.23 -0.88 16 3 C -0.15 -1.30 8.93 37.16 0.33 -0.96 16 4 C -0.14 -1.02 5.17 -27.88 -0.14 -1.17 16 5 C 0.51 5.31 7.54 -10.99 -0.08 5.23 16 6 O -0.54 -7.38 13.62 5.56 0.08 -7.31 16 7 N -0.72 -6.81 5.06 -52.49 -0.27 -7.07 16 8 C 0.13 1.47 3.34 -66.57 -0.22 1.25 16 9 H 0.10 1.23 7.56 -51.93 -0.39 0.84 16 10 C -0.13 -1.24 6.78 -24.87 -0.17 -1.40 16 11 C 0.05 0.45 6.05 -1.89 -0.01 0.44 16 12 N -0.46 -5.95 5.30 -169.23 -0.90 -6.85 16 13 C 0.29 4.51 6.21 -155.02 -0.96 3.55 16 14 C -0.19 -2.49 9.46 -39.22 -0.37 -2.86 16 15 C -0.06 -0.79 10.17 -39.32 -0.40 -1.19 16 16 C -0.18 -2.82 9.71 -39.42 -0.38 -3.20 16 17 C 0.16 3.03 6.14 -82.61 -0.51 2.52 16 18 C 0.20 4.18 6.56 -5.19 -0.03 4.14 16 19 N -0.72 -18.89 5.59 -61.08 -0.34 -19.23 16 20 C -0.24 -6.79 9.99 -15.06 -0.15 -6.94 16 21 H 0.07 1.96 7.83 -52.48 -0.41 1.55 16 22 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 23 N -0.93 -28.64 13.06 55.49 0.72 -27.91 16 24 Si 0.91 22.56 29.55 -169.99 -5.02 17.53 16 25 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 26 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 27 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 28 N -0.50 -9.10 8.06 -8.67 -0.07 -9.17 16 29 C 0.03 0.39 6.12 -2.75 -0.02 0.38 16 30 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.08 0.75 7.95 -51.93 -0.41 0.34 16 34 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 35 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.07 0.80 5.95 -51.93 -0.31 0.49 16 37 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.40 3.06 8.36 -40.82 -0.34 2.72 16 40 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 41 H 0.08 0.72 8.06 -51.93 -0.42 0.30 16 42 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 43 H 0.06 0.60 8.00 -51.93 -0.42 0.18 16 44 H 0.13 1.38 8.05 -52.49 -0.42 0.96 16 45 H 0.13 1.29 8.06 -52.49 -0.42 0.87 16 46 H 0.13 1.93 8.06 -52.49 -0.42 1.51 16 47 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 48 H 0.04 0.73 8.04 -51.93 -0.42 0.31 16 49 H 0.39 10.87 7.66 -40.82 -0.31 10.55 16 50 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 51 H 0.10 1.52 6.50 -51.93 -0.34 1.18 16 52 H 0.09 1.21 7.66 -51.93 -0.40 0.81 16 LS Contribution 418.46 15.07 6.31 6.31 Total: -1.00 -33.68 418.46 -11.40 -45.08 By element: Atomic # 1 Polarization: 19.59 SS G_CDS: -8.80 Total: 10.79 kcal Atomic # 6 Polarization: 0.94 SS G_CDS: -3.11 Total: -2.17 kcal Atomic # 7 Polarization: -69.38 SS G_CDS: -0.85 Total: -70.23 kcal Atomic # 8 Polarization: -7.38 SS G_CDS: 0.08 Total: -7.31 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -5.02 Total: 17.53 kcal Total LS contribution 6.31 Total: 6.31 kcal Total: -33.68 -11.40 -45.08 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001128077107.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.698 kcal (2) G-P(sol) polarization free energy of solvation -33.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.082 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds