Wall clock time and date at job start Wed Apr 1 2020 04:27:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47593 * 2 1 4 4 C 1.53000 * 109.47353 * 120.00389 * 2 1 3 5 5 C 1.50700 * 109.47492 * 174.99761 * 4 2 1 6 6 O 1.21280 * 119.99460 * 359.97438 * 5 4 2 7 7 N 1.34771 * 119.99942 * 180.02562 * 5 4 2 8 8 C 1.46509 * 119.99750 * 180.02562 * 7 5 4 9 9 H 1.09005 * 110.27338 * 327.08435 * 8 7 5 10 10 C 1.54590 * 110.30808 * 89.27994 * 8 7 5 11 11 C 1.54938 * 102.92263 * 140.87476 * 10 8 7 12 12 N 1.48540 * 103.22644 * 322.58374 * 11 10 8 13 13 C 1.39000 * 111.00140 * 159.71925 * 12 11 10 14 14 C 1.39135 * 119.70622 * 62.60681 * 13 12 11 15 15 C 1.38302 * 119.09426 * 180.27609 * 14 13 12 16 16 C 1.38875 * 118.50566 * 359.48331 * 15 14 13 17 17 C 1.38026 * 119.33180 * 0.53619 * 16 15 14 18 18 C 1.50697 * 119.57331 * 179.72514 * 17 16 15 19 19 N 1.46501 * 109.46983 * 94.98041 * 18 17 16 20 20 C 1.36936 * 119.99904 * 180.02562 * 19 18 17 21 21 H 1.08004 * 120.00103 * 359.97438 * 20 19 18 22 22 C 1.38810 * 119.99948 * 180.02562 * 20 19 18 23 23 N 1.31612 * 120.00205 * 359.97438 * 22 20 19 24 24 Si 1.86806 * 119.99820 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.47152 * 90.00105 * 24 22 20 26 26 H 1.48503 * 109.46800 * 209.99995 * 24 22 20 27 27 H 1.48493 * 109.47214 * 329.99568 * 24 22 20 28 28 N 1.31965 * 120.85315 * 359.70742 * 17 16 15 29 29 C 1.47911 * 105.81521 * 39.20737 * 12 11 10 30 30 H 1.09005 * 109.46566 * 299.99877 * 1 2 3 31 31 H 1.08999 * 109.46849 * 59.99272 * 1 2 3 32 32 H 1.09000 * 109.47290 * 179.97438 * 1 2 3 33 33 H 1.09005 * 109.47030 * 239.99862 * 2 1 3 34 34 H 1.09001 * 109.47203 * 300.00900 * 3 2 1 35 35 H 1.09005 * 109.47045 * 59.99871 * 3 2 1 36 36 H 1.08996 * 109.47584 * 179.97438 * 3 2 1 37 37 H 1.08999 * 109.46885 * 54.99428 * 4 2 1 38 38 H 1.09004 * 109.46855 * 295.00061 * 4 2 1 39 39 H 0.96998 * 120.00749 * 359.97438 * 7 5 4 40 40 H 1.08999 * 110.73042 * 259.22860 * 10 8 7 41 41 H 1.08997 * 110.72770 * 22.33652 * 10 8 7 42 42 H 1.08997 * 110.67114 * 204.15448 * 11 10 8 43 43 H 1.08999 * 110.66976 * 81.01437 * 11 10 8 44 44 H 1.08002 * 120.44854 * 359.97438 * 14 13 12 45 45 H 1.08000 * 120.73999 * 179.72440 * 15 14 13 46 46 H 1.08002 * 120.33283 * 180.26519 * 16 15 14 47 47 H 1.08999 * 109.47204 * 214.98576 * 18 17 16 48 48 H 1.09006 * 109.47110 * 334.97859 * 18 17 16 49 49 H 0.96999 * 120.00036 * 359.97438 * 19 18 17 50 50 H 0.96998 * 120.00755 * 179.97438 * 23 22 20 51 51 H 1.08993 * 109.91677 * 94.02511 * 29 12 11 52 52 H 1.09002 * 109.91103 * 215.11662 * 29 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 3.5420 -0.8295 1.1888 6 8 4.1449 -0.3749 0.2398 7 7 4.2148 -1.4324 2.1889 8 6 5.6750 -1.5371 2.1304 9 1 6.0050 -1.6434 1.0970 10 6 6.3284 -0.2954 2.7795 11 6 7.5386 -0.8970 3.5372 12 7 7.0110 -2.1870 4.0509 13 6 8.0465 -3.0617 4.3585 14 6 8.9600 -2.7261 5.3529 15 6 9.9888 -3.6032 5.6447 16 6 10.0637 -4.7959 4.9371 17 6 9.1233 -5.0644 3.9631 18 6 9.2031 -6.3542 3.1878 19 7 8.3343 -7.3543 3.8131 20 6 8.2438 -8.6122 3.2795 21 1 8.8127 -8.8669 2.3975 22 6 7.4202 -9.5598 3.8717 23 7 6.7266 -9.2494 4.9463 24 14 7.2963 -11.2755 3.1433 25 1 8.3271 -12.1499 3.7582 26 1 5.9473 -11.8330 3.4166 27 1 7.5158 -11.2075 1.6763 28 7 8.1551 -4.2065 3.7023 29 6 6.1592 -2.7325 2.9717 30 1 -0.3633 0.5139 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3634 -1.0277 -0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 1.6767 1.9564 -0.8899 35 1 1.6768 1.9563 0.8900 36 1 3.1301 1.4424 0.0005 37 1 1.6054 -1.7198 1.2950 38 1 1.7517 -0.1584 2.1369 39 1 3.7326 -1.7963 2.9477 40 1 6.6619 0.4082 2.0168 41 1 5.6377 0.1866 3.4713 42 1 7.8379 -0.2486 4.3606 43 1 8.3730 -1.0664 2.8566 44 1 8.8698 -1.7913 5.8862 45 1 10.7153 -3.3675 6.4083 46 1 10.8524 -5.5041 5.1439 47 1 8.8788 -6.1818 2.1615 48 1 10.2316 -6.7152 3.1880 49 1 7.8236 -7.1258 4.6055 50 1 6.1507 -9.9113 5.3599 51 1 6.7393 -3.4138 2.3494 52 1 5.3063 -3.2577 3.4015 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001128077107.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:27:37 Heat of formation + Delta-G solvation = -4.783339 kcal Electronic energy + Delta-G solvation = -29952.231403 eV Core-core repulsion = 25950.895864 eV Total energy + Delta-G solvation = -4001.335539 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -41.88648 -40.95326 -39.40849 -36.83440 -36.45014 -35.49430 -33.87848 -33.39129 -32.20881 -30.18421 -30.12685 -28.47864 -27.93552 -27.38936 -24.97900 -24.42327 -23.12249 -22.27893 -22.05385 -21.53082 -20.72586 -19.41089 -18.41395 -18.07635 -17.53875 -17.35054 -16.80526 -16.71305 -16.54681 -15.72003 -15.68466 -15.60966 -15.39441 -15.09227 -14.80878 -14.72337 -14.45531 -14.18251 -13.95183 -13.82098 -13.49069 -13.37441 -13.18995 -13.08454 -13.06650 -12.88502 -12.77764 -12.74644 -12.65637 -12.49533 -12.12865 -12.05344 -11.96010 -11.88934 -11.73565 -11.56898 -11.03516 -10.94704 -10.71544 -10.65142 -10.31825 -10.07521 -9.16055 -9.06898 -7.97350 -5.28342 0.14240 0.39377 1.46097 1.48657 1.57197 1.65901 2.15938 2.50051 2.55151 2.82737 3.28918 3.37191 3.38235 3.70922 3.78530 3.91127 3.94653 4.03963 4.07302 4.14529 4.16183 4.21828 4.25134 4.30209 4.37364 4.39625 4.63622 4.67937 4.69846 4.72743 4.73816 4.76078 4.82432 4.84648 4.86174 4.91190 4.93456 5.03992 5.05712 5.09333 5.14994 5.27709 5.31178 5.41818 5.45181 5.50406 5.53723 5.56749 5.60630 6.11585 6.22070 6.55517 7.09087 7.27354 7.28704 7.98789 8.25468 9.26204 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.008937 B = 0.002442 C = 0.001992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3132.463895 B =11464.270483 C =14055.391247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.083 4.083 3 C -0.150 4.150 4 C -0.133 4.133 5 C 0.510 3.490 6 O -0.577 6.577 7 N -0.714 5.714 8 C 0.141 3.859 9 H 0.076 0.924 10 C -0.120 4.120 11 C 0.047 3.953 12 N -0.456 5.456 13 C 0.278 3.722 14 C -0.176 4.176 15 C -0.051 4.051 16 C -0.185 4.185 17 C 0.131 3.869 18 C 0.201 3.799 19 N -0.734 5.734 20 C -0.247 4.247 21 H 0.080 0.920 22 C -0.075 4.075 23 N -0.970 5.970 24 Si 0.979 3.021 25 H -0.283 1.283 26 H -0.295 1.295 27 H -0.269 1.269 28 N -0.533 5.533 29 C 0.036 3.964 30 H 0.067 0.933 31 H 0.057 0.943 32 H 0.060 0.940 33 H 0.054 0.946 34 H 0.053 0.947 35 H 0.061 0.939 36 H 0.049 0.951 37 H 0.109 0.891 38 H 0.118 0.882 39 H 0.414 0.586 40 H 0.085 0.915 41 H 0.094 0.906 42 H 0.119 0.881 43 H 0.050 0.950 44 H 0.166 0.834 45 H 0.176 0.824 46 H 0.144 0.856 47 H 0.023 0.977 48 H 0.050 0.950 49 H 0.371 0.629 50 H 0.252 0.748 51 H 0.064 0.936 52 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.640 25.303 -1.454 25.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.102 4.102 3 C -0.207 4.207 4 C -0.172 4.172 5 C 0.299 3.701 6 O -0.457 6.457 7 N -0.367 5.367 8 C 0.035 3.965 9 H 0.094 0.906 10 C -0.159 4.159 11 C -0.078 4.078 12 N -0.175 5.175 13 C 0.046 3.954 14 C -0.198 4.198 15 C -0.076 4.076 16 C -0.207 4.207 17 C -0.006 4.006 18 C 0.074 3.926 19 N -0.377 5.377 20 C -0.378 4.378 21 H 0.097 0.903 22 C -0.267 4.267 23 N -0.621 5.621 24 Si 0.807 3.193 25 H -0.209 1.209 26 H -0.221 1.221 27 H -0.194 1.194 28 N -0.248 5.248 29 C -0.092 4.092 30 H 0.086 0.914 31 H 0.077 0.923 32 H 0.079 0.921 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.080 0.920 36 H 0.068 0.932 37 H 0.127 0.873 38 H 0.136 0.864 39 H 0.251 0.749 40 H 0.103 0.897 41 H 0.112 0.888 42 H 0.137 0.863 43 H 0.068 0.932 44 H 0.183 0.817 45 H 0.193 0.807 46 H 0.162 0.838 47 H 0.041 0.959 48 H 0.068 0.932 49 H 0.202 0.798 50 H 0.061 0.939 51 H 0.082 0.918 52 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -5.098 25.392 -2.458 26.015 hybrid contribution 0.442 -1.521 0.159 1.592 sum -4.657 23.871 -2.299 24.429 Atomic orbital electron populations 1.21823 0.93269 1.02369 1.02607 1.20855 0.96377 0.96338 0.96603 1.21907 1.01429 0.95597 1.01750 1.21843 0.89319 1.04411 1.01666 1.21337 0.91455 0.76202 0.81148 1.90655 1.71478 1.48903 1.34622 1.46110 1.06596 1.59676 1.24301 1.21636 0.81071 0.94543 0.99256 0.90572 1.22873 0.96721 0.96610 0.99680 1.23420 0.96665 0.88272 0.99481 1.62177 1.14332 1.03773 1.37192 1.20304 0.90982 0.90790 0.93368 1.21833 0.95655 1.03280 0.99001 1.21857 0.97076 0.91423 0.97271 1.22087 1.01322 0.99543 0.97713 1.21155 0.90375 0.94074 0.95037 1.19629 0.94578 0.84325 0.94049 1.42379 1.52859 1.09220 1.33194 1.19659 1.21042 0.88697 1.08440 0.90251 1.25638 0.99785 1.02604 0.98694 1.69844 1.33103 1.35418 1.23710 0.85064 0.76589 0.79475 0.78147 1.20929 1.22141 1.19429 1.67241 1.23919 1.04865 1.28768 1.22949 0.97593 0.96352 0.92284 0.91396 0.92348 0.92121 0.92767 0.92838 0.91999 0.93216 0.87277 0.86390 0.74891 0.89673 0.88772 0.86303 0.93184 0.81657 0.80704 0.83837 0.95901 0.93192 0.79756 0.93926 0.91780 0.90148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.56 9.19 71.98 0.66 -0.90 16 2 C -0.08 -1.27 2.57 -10.79 -0.03 -1.30 16 3 C -0.15 -2.45 8.93 71.98 0.64 -1.81 16 4 C -0.13 -1.77 5.17 29.85 0.15 -1.62 16 5 C 0.51 10.44 7.54 87.66 0.66 11.10 16 6 O -0.58 -16.34 13.62 -3.03 -0.04 -16.38 16 7 N -0.71 -13.25 5.06 -438.37 -2.22 -15.47 16 8 C 0.14 3.13 3.34 45.87 0.15 3.29 16 9 H 0.08 2.04 7.56 -2.38 -0.02 2.02 16 10 C -0.12 -2.08 6.78 31.80 0.22 -1.87 16 11 C 0.05 0.85 6.05 86.65 0.52 1.38 16 12 N -0.46 -11.43 5.30 -689.32 -3.65 -15.08 16 13 C 0.28 8.33 6.21 133.06 0.83 9.16 16 14 C -0.18 -4.14 9.46 22.50 0.21 -3.93 16 15 C -0.05 -1.17 10.17 22.44 0.23 -0.94 16 16 C -0.19 -5.63 9.71 22.37 0.22 -5.41 16 17 C 0.13 4.96 6.14 42.49 0.26 5.22 16 18 C 0.20 8.80 6.56 85.63 0.56 9.36 16 19 N -0.73 -39.69 5.59 -347.17 -1.94 -41.64 16 20 C -0.25 -14.27 9.99 84.03 0.84 -13.43 16 21 H 0.08 4.36 7.83 -2.91 -0.02 4.33 16 22 C -0.08 -4.42 5.50 84.86 0.47 -3.96 16 23 N -0.97 -61.10 13.06 21.65 0.28 -60.82 16 24 Si 0.98 46.96 29.55 68.60 2.03 48.99 16 25 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 26 H -0.29 -14.20 7.11 99.48 0.71 -13.49 16 27 H -0.27 -12.25 7.11 99.48 0.71 -11.55 16 28 N -0.53 -19.97 8.06 -181.34 -1.46 -21.43 16 29 C 0.04 0.99 6.12 86.44 0.53 1.52 16 30 H 0.07 0.58 8.14 -2.38 -0.02 0.56 16 31 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 33 H 0.05 1.08 7.95 -2.38 -0.02 1.06 16 34 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 35 H 0.06 0.81 8.14 -2.38 -0.02 0.79 16 36 H 0.05 1.08 5.95 -2.39 -0.01 1.07 16 37 H 0.11 1.17 8.14 -2.39 -0.02 1.15 16 38 H 0.12 1.01 8.14 -2.38 -0.02 0.99 16 39 H 0.41 5.90 8.36 -92.71 -0.77 5.13 16 40 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 41 H 0.09 1.43 8.06 -2.39 -0.02 1.41 16 42 H 0.12 1.53 8.14 -2.39 -0.02 1.51 16 43 H 0.05 1.00 8.00 -2.39 -0.02 0.98 16 44 H 0.17 2.70 8.05 -2.91 -0.02 2.67 16 45 H 0.18 2.53 8.06 -2.91 -0.02 2.51 16 46 H 0.14 3.97 8.06 -2.91 -0.02 3.95 16 47 H 0.02 1.05 8.14 -2.39 -0.02 1.03 16 48 H 0.05 2.03 8.04 -2.38 -0.02 2.01 16 49 H 0.37 21.80 7.66 -92.71 -0.71 21.09 16 50 H 0.25 15.27 8.31 -92.71 -0.77 14.50 16 51 H 0.06 2.18 6.50 -2.39 -0.02 2.16 16 52 H 0.08 2.27 7.66 -2.39 -0.02 2.26 16 Total: -1.00 -76.33 418.46 -0.44 -76.77 By element: Atomic # 1 Polarization: 39.74 SS G_CDS: -0.56 Total: 39.17 kcal Atomic # 6 Polarization: -1.26 SS G_CDS: 7.13 Total: 5.87 kcal Atomic # 7 Polarization: -145.43 SS G_CDS: -8.99 Total: -154.42 kcal Atomic # 8 Polarization: -16.34 SS G_CDS: -0.04 Total: -16.38 kcal Atomic # 14 Polarization: 46.96 SS G_CDS: 2.03 Total: 48.99 kcal Total: -76.33 -0.44 -76.77 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001128077107.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.989 kcal (2) G-P(sol) polarization free energy of solvation -76.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds