Wall clock time and date at job start Wed Apr 1 2020 04:27:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53000 * 109.47428 * 2 1 4 4 C 1.53008 * 109.47076 * 119.99884 * 2 1 3 5 5 C 1.50704 * 109.46752 * 175.00043 * 4 2 1 6 6 O 1.21282 * 120.00294 * 359.97438 * 5 4 2 7 7 N 1.34779 * 119.99341 * 180.02562 * 5 4 2 8 8 C 1.46505 * 119.99748 * 179.97438 * 7 5 4 9 9 H 1.09002 * 110.86988 * 37.39417 * 8 7 5 10 10 C 1.55139 * 110.99225 * 273.55075 * 8 7 5 11 11 C 1.54316 * 103.01810 * 206.25405 * 10 8 7 12 12 N 1.47446 * 107.23320 * 22.28197 * 11 10 8 13 13 C 1.39002 * 110.99834 * 123.26047 * 12 11 10 14 14 C 1.39130 * 119.70738 * 59.87497 * 13 12 11 15 15 C 1.38301 * 119.09536 * 179.97438 * 14 13 12 16 16 C 1.38880 * 118.50515 * 359.97438 * 15 14 13 17 17 C 1.38018 * 119.33010 * 359.97438 * 16 15 14 18 18 C 1.50712 * 119.56966 * 180.02562 * 17 16 15 19 19 N 1.46501 * 109.46888 * 95.00308 * 18 17 16 20 20 C 1.36938 * 119.99497 * 179.97438 * 19 18 17 21 21 H 1.07999 * 120.00244 * 359.97438 * 20 19 18 22 22 C 1.38811 * 119.99793 * 179.97438 * 20 19 18 23 23 N 1.31617 * 120.00022 * 179.97438 * 22 20 19 24 24 Si 1.86800 * 119.99924 * 0.02562 * 22 20 19 25 25 H 1.48505 * 109.47140 * 89.99568 * 24 22 20 26 26 H 1.48503 * 109.47230 * 209.99463 * 24 22 20 27 27 H 1.48502 * 109.47293 * 329.99609 * 24 22 20 28 28 N 1.31967 * 120.85795 * 359.72440 * 17 16 15 29 29 C 1.47843 * 108.56761 * 0.99070 * 12 11 10 30 30 H 1.08998 * 109.47288 * 299.99913 * 1 2 3 31 31 H 1.08997 * 109.47361 * 59.99821 * 1 2 3 32 32 H 1.09001 * 109.47164 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.47288 * 240.00087 * 2 1 3 34 34 H 1.08994 * 109.47562 * 179.97438 * 3 2 1 35 35 H 1.09002 * 109.46664 * 300.00094 * 3 2 1 36 36 H 1.08998 * 109.46815 * 59.99797 * 3 2 1 37 37 H 1.08994 * 109.47122 * 55.00291 * 4 2 1 38 38 H 1.09000 * 109.47085 * 294.99968 * 4 2 1 39 39 H 0.96998 * 120.00234 * 0.02562 * 7 5 4 40 40 H 1.08999 * 110.70823 * 87.87098 * 10 8 7 41 41 H 1.08996 * 110.85104 * 324.70539 * 10 8 7 42 42 H 1.08997 * 109.89177 * 262.87868 * 11 10 8 43 43 H 1.08994 * 109.89296 * 141.68633 * 11 10 8 44 44 H 1.07999 * 120.45595 * 359.97438 * 14 13 12 45 45 H 1.07998 * 120.74891 * 179.97438 * 15 14 13 46 46 H 1.08008 * 120.33328 * 179.97438 * 16 15 14 47 47 H 1.09000 * 109.46672 * 214.99728 * 18 17 16 48 48 H 1.08997 * 109.46823 * 335.00052 * 18 17 16 49 49 H 0.97001 * 119.99986 * 359.97438 * 19 18 17 50 50 H 0.96997 * 119.99941 * 180.02562 * 23 22 20 51 51 H 1.08998 * 110.37465 * 94.73106 * 29 12 11 52 52 H 1.09003 * 110.37404 * 217.07863 * 29 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 3.5419 -0.8294 1.1889 6 8 4.1449 -0.3748 0.2399 7 7 4.2148 -1.4322 2.1891 8 6 5.6748 -1.5378 2.1302 9 1 6.1119 -0.6391 1.6950 10 6 6.1093 -2.8033 1.3449 11 6 7.4984 -3.1202 1.9375 12 7 7.5597 -2.4895 3.2688 13 6 7.8447 -3.4292 4.2526 14 6 9.0292 -4.1563 4.1891 15 6 9.3002 -5.0877 5.1749 16 6 8.3744 -5.2611 6.1955 17 6 7.2200 -4.5046 6.1968 18 6 6.2119 -4.6880 7.3020 19 7 6.4512 -3.6938 8.3511 20 6 5.6528 -3.6665 9.4633 21 1 4.8465 -4.3775 9.5669 22 6 5.8798 -2.7249 10.4576 23 7 5.1122 -2.6982 11.5264 24 14 7.2739 -1.4946 10.2781 25 1 6.7753 -0.2789 9.5860 26 1 7.7839 -1.1246 11.6228 27 1 8.3709 -2.1021 9.4826 28 7 6.9902 -3.6187 5.2461 29 6 6.2677 -1.8210 3.5329 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 3.1299 1.4425 0.0005 35 1 1.6766 1.9563 -0.8900 36 1 1.6766 1.9563 0.8900 37 1 1.6054 -1.7198 1.2952 38 1 1.7516 -0.1583 2.1370 39 1 3.7324 -1.7967 2.9475 40 1 6.1849 -2.5884 0.2790 41 1 5.4175 -3.6266 1.5226 42 1 8.2778 -2.7089 1.2961 43 1 7.6239 -4.1988 2.0321 44 1 9.7275 -3.9956 3.3811 45 1 10.2113 -5.6671 5.1516 46 1 8.5560 -5.9807 6.9802 47 1 5.2063 -4.5588 6.9016 48 1 6.3103 -5.6894 7.7210 49 1 7.1751 -3.0550 8.2578 50 1 5.2706 -2.0400 12.2210 51 1 5.6081 -2.4798 4.0977 52 1 6.4268 -0.8877 4.0732 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001128077108.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:27:43 Heat of formation + Delta-G solvation = 20.033479 kcal Electronic energy + Delta-G solvation = -30189.719459 eV Core-core repulsion = 26189.460058 eV Total energy + Delta-G solvation = -4000.259401 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -40.96885 -40.08383 -38.49734 -35.98313 -35.14718 -34.46323 -32.54321 -32.21446 -30.93570 -29.36905 -29.21509 -27.71446 -27.34244 -26.08409 -23.45657 -22.96707 -21.98426 -21.34493 -21.16684 -20.44940 -20.05559 -17.96829 -17.48575 -17.31603 -16.43451 -16.17218 -15.98603 -15.75856 -15.38908 -14.72864 -14.70584 -14.26322 -14.00398 -13.98521 -13.86214 -13.72719 -13.62662 -13.11399 -12.93282 -12.60426 -12.57265 -12.45311 -12.42968 -12.28103 -12.08729 -12.00582 -11.71421 -11.68964 -11.40066 -11.18009 -11.13834 -10.98214 -10.96739 -10.88623 -10.20318 -10.00881 -9.92767 -9.64663 -9.53696 -9.30831 -9.22528 -8.94046 -8.11836 -7.27863 -5.79581 -3.15677 1.20127 1.37981 2.41346 2.80039 3.37711 3.42526 3.45132 3.50779 3.88238 4.21341 4.28525 4.42692 4.53198 4.58058 4.60404 4.62604 4.76526 4.91222 4.96853 5.00009 5.10680 5.17221 5.19966 5.21557 5.28113 5.32025 5.35587 5.41714 5.47088 5.52091 5.57345 5.62819 5.67409 5.69715 5.70590 5.77333 5.78996 5.82982 5.88893 6.01411 6.07316 6.14841 6.24547 6.27636 6.34808 6.42099 6.55644 6.68583 7.11882 7.26048 7.93967 8.00231 8.15975 8.38795 9.16515 9.89160 10.08600 11.38412 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.008975 B = 0.002684 C = 0.002224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3118.899319 B =10428.600364 C =12587.244918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.080 4.080 3 C -0.154 4.154 4 C -0.140 4.140 5 C 0.516 3.484 6 O -0.538 6.538 7 N -0.722 5.722 8 C 0.136 3.864 9 H 0.102 0.898 10 C -0.150 4.150 11 C 0.050 3.950 12 N -0.466 5.466 13 C 0.299 3.701 14 C -0.189 4.189 15 C -0.059 4.059 16 C -0.183 4.183 17 C 0.157 3.843 18 C 0.204 3.796 19 N -0.746 5.746 20 C -0.244 4.244 21 H 0.092 0.908 22 C 0.008 3.992 23 N -0.932 5.932 24 Si 0.883 3.117 25 H -0.283 1.283 26 H -0.290 1.290 27 H -0.278 1.278 28 N -0.504 5.504 29 C 0.037 3.963 30 H 0.056 0.944 31 H 0.057 0.943 32 H 0.054 0.946 33 H 0.076 0.924 34 H 0.074 0.926 35 H 0.051 0.949 36 H 0.048 0.952 37 H 0.094 0.906 38 H 0.095 0.905 39 H 0.405 0.595 40 H 0.084 0.916 41 H 0.073 0.927 42 H 0.089 0.911 43 H 0.067 0.933 44 H 0.132 0.868 45 H 0.134 0.866 46 H 0.137 0.863 47 H 0.045 0.955 48 H 0.045 0.955 49 H 0.363 0.637 50 H 0.260 0.740 51 H 0.094 0.906 52 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.675 -0.705 -25.265 25.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.099 4.099 3 C -0.211 4.211 4 C -0.180 4.180 5 C 0.303 3.697 6 O -0.415 6.415 7 N -0.374 5.374 8 C 0.030 3.970 9 H 0.120 0.880 10 C -0.190 4.190 11 C -0.076 4.076 12 N -0.184 5.184 13 C 0.067 3.933 14 C -0.212 4.212 15 C -0.085 4.085 16 C -0.204 4.204 17 C 0.019 3.981 18 C 0.077 3.923 19 N -0.392 5.392 20 C -0.374 4.374 21 H 0.110 0.890 22 C -0.188 4.188 23 N -0.580 5.580 24 Si 0.714 3.286 25 H -0.210 1.210 26 H -0.216 1.216 27 H -0.205 1.205 28 N -0.218 5.218 29 C -0.090 4.090 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.073 0.927 33 H 0.095 0.905 34 H 0.093 0.907 35 H 0.070 0.930 36 H 0.067 0.933 37 H 0.112 0.888 38 H 0.114 0.886 39 H 0.240 0.760 40 H 0.102 0.898 41 H 0.092 0.908 42 H 0.107 0.893 43 H 0.085 0.915 44 H 0.150 0.850 45 H 0.152 0.848 46 H 0.155 0.845 47 H 0.063 0.937 48 H 0.063 0.937 49 H 0.195 0.805 50 H 0.070 0.930 51 H 0.112 0.888 52 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -0.807 0.459 -25.783 25.800 hybrid contribution 1.121 -0.207 0.501 1.245 sum 0.314 0.252 -25.282 25.285 Atomic orbital electron populations 1.21870 0.94921 1.01770 1.02069 1.20851 0.95091 0.96905 0.97018 1.21968 1.03108 0.94987 1.01084 1.21813 0.91693 1.03210 1.01243 1.20763 0.90259 0.76746 0.81914 1.90663 1.70440 1.47313 1.33040 1.45982 1.07074 1.60101 1.24240 1.22051 0.80246 0.98850 0.95807 0.87957 1.23163 0.96411 0.98222 1.01192 1.22913 0.97853 0.98704 0.88111 1.60816 1.31922 1.24218 1.01464 1.19891 0.91212 0.89923 0.92318 1.21436 0.97838 0.99745 1.02167 1.21430 0.98546 0.95798 0.92719 1.21968 0.95354 1.02935 1.00176 1.21542 0.94385 0.89245 0.92923 1.19577 0.94053 0.93702 0.84977 1.42567 1.38370 1.37895 1.20406 1.19021 1.09639 1.14410 0.94310 0.88973 1.24625 0.98694 0.98984 0.96493 1.69693 1.40493 1.38081 1.09729 0.86564 0.82960 0.82271 0.76830 1.20998 1.21642 1.20474 1.67343 1.31432 1.19222 1.03829 1.23246 0.89441 1.00696 0.95609 0.92523 0.92405 0.92661 0.90533 0.90730 0.92995 0.93280 0.88815 0.88625 0.76042 0.89756 0.90821 0.89289 0.91466 0.85036 0.84830 0.84542 0.93744 0.93723 0.80467 0.92983 0.88838 0.89058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 9.19 37.15 0.34 -0.59 16 2 C -0.08 -0.63 2.57 -90.62 -0.23 -0.86 16 3 C -0.15 -1.35 8.93 37.16 0.33 -1.02 16 4 C -0.14 -1.02 5.18 -27.88 -0.14 -1.17 16 5 C 0.52 5.18 7.54 -10.98 -0.08 5.09 16 6 O -0.54 -7.08 13.71 5.56 0.08 -7.00 16 7 N -0.72 -6.66 5.23 -51.74 -0.27 -6.93 16 8 C 0.14 1.41 3.31 -65.79 -0.22 1.19 16 9 H 0.10 1.18 7.73 -51.93 -0.40 0.78 16 10 C -0.15 -1.41 6.64 -24.91 -0.17 -1.57 16 11 C 0.05 0.48 6.45 -2.84 -0.02 0.47 16 12 N -0.47 -5.80 5.20 -170.00 -0.88 -6.68 16 13 C 0.30 4.28 6.15 -155.02 -0.95 3.33 16 14 C -0.19 -2.34 9.05 -39.23 -0.35 -2.69 16 15 C -0.06 -0.71 10.17 -39.32 -0.40 -1.11 16 16 C -0.18 -2.64 9.71 -39.42 -0.38 -3.02 16 17 C 0.16 2.68 6.14 -82.61 -0.51 2.17 16 18 C 0.20 3.99 6.56 -5.19 -0.03 3.96 16 19 N -0.75 -18.01 5.40 -61.08 -0.33 -18.34 16 20 C -0.24 -6.89 10.47 -15.06 -0.16 -7.05 16 21 H 0.09 2.74 8.06 -52.49 -0.42 2.31 16 22 C 0.01 0.24 5.50 -17.43 -0.10 0.14 16 23 N -0.93 -29.17 13.97 55.49 0.78 -28.40 16 24 Si 0.88 22.58 27.74 -169.99 -4.71 17.87 16 25 H -0.28 -7.25 7.11 56.52 0.40 -6.85 16 26 H -0.29 -7.44 7.11 56.52 0.40 -7.03 16 27 H -0.28 -6.84 6.52 56.52 0.37 -6.47 16 28 N -0.50 -8.40 8.08 -8.67 -0.07 -8.47 16 29 C 0.04 0.46 5.99 -2.30 -0.01 0.44 16 30 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 31 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.08 0.69 7.95 -51.93 -0.41 0.28 16 34 H 0.07 0.82 5.95 -51.93 -0.31 0.51 16 35 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 36 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 37 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.40 3.14 8.52 -40.82 -0.35 2.79 16 40 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 42 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.07 0.63 7.16 -51.93 -0.37 0.26 16 44 H 0.13 1.31 7.99 -52.49 -0.42 0.89 16 45 H 0.13 1.18 8.06 -52.49 -0.42 0.76 16 46 H 0.14 1.78 8.06 -52.48 -0.42 1.36 16 47 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 48 H 0.05 0.83 8.04 -51.93 -0.42 0.41 16 49 H 0.36 8.89 5.52 -40.82 -0.23 8.67 16 50 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 51 H 0.09 1.27 6.42 -51.93 -0.33 0.93 16 52 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 LS Contribution 415.08 15.07 6.26 6.26 Total: -1.00 -33.81 415.08 -11.00 -44.81 By element: Atomic # 1 Polarization: 17.93 SS G_CDS: -8.75 Total: 9.18 kcal Atomic # 6 Polarization: 0.80 SS G_CDS: -3.09 Total: -2.28 kcal Atomic # 7 Polarization: -68.05 SS G_CDS: -0.78 Total: -68.83 kcal Atomic # 8 Polarization: -7.08 SS G_CDS: 0.08 Total: -7.00 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -4.71 Total: 17.87 kcal Total LS contribution 6.26 Total: 6.26 kcal Total: -33.81 -11.00 -44.81 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001128077108.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.846 kcal (2) G-P(sol) polarization free energy of solvation -33.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.812 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds