Wall clock time and date at job start Wed Apr 1 2020 04:27:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53000 * 109.47428 * 2 1 4 4 C 1.53008 * 109.47076 * 119.99884 * 2 1 3 5 5 C 1.50704 * 109.46752 * 175.00043 * 4 2 1 6 6 O 1.21282 * 120.00294 * 359.97438 * 5 4 2 7 7 N 1.34779 * 119.99341 * 180.02562 * 5 4 2 8 8 C 1.46505 * 119.99748 * 179.97438 * 7 5 4 9 9 H 1.09002 * 110.86988 * 37.39417 * 8 7 5 10 10 C 1.55139 * 110.99225 * 273.55075 * 8 7 5 11 11 C 1.54316 * 103.01810 * 206.25405 * 10 8 7 12 12 N 1.47446 * 107.23320 * 22.28197 * 11 10 8 13 13 C 1.39002 * 110.99834 * 123.26047 * 12 11 10 14 14 C 1.39130 * 119.70738 * 59.87497 * 13 12 11 15 15 C 1.38301 * 119.09536 * 179.97438 * 14 13 12 16 16 C 1.38880 * 118.50515 * 359.97438 * 15 14 13 17 17 C 1.38018 * 119.33010 * 359.97438 * 16 15 14 18 18 C 1.50712 * 119.56966 * 180.02562 * 17 16 15 19 19 N 1.46501 * 109.46888 * 95.00308 * 18 17 16 20 20 C 1.36938 * 119.99497 * 179.97438 * 19 18 17 21 21 H 1.07999 * 120.00244 * 359.97438 * 20 19 18 22 22 C 1.38811 * 119.99793 * 179.97438 * 20 19 18 23 23 N 1.31617 * 120.00022 * 179.97438 * 22 20 19 24 24 Si 1.86800 * 119.99924 * 0.02562 * 22 20 19 25 25 H 1.48505 * 109.47140 * 89.99568 * 24 22 20 26 26 H 1.48503 * 109.47230 * 209.99463 * 24 22 20 27 27 H 1.48502 * 109.47293 * 329.99609 * 24 22 20 28 28 N 1.31967 * 120.85795 * 359.72440 * 17 16 15 29 29 C 1.47843 * 108.56761 * 0.99070 * 12 11 10 30 30 H 1.08998 * 109.47288 * 299.99913 * 1 2 3 31 31 H 1.08997 * 109.47361 * 59.99821 * 1 2 3 32 32 H 1.09001 * 109.47164 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.47288 * 240.00087 * 2 1 3 34 34 H 1.08994 * 109.47562 * 179.97438 * 3 2 1 35 35 H 1.09002 * 109.46664 * 300.00094 * 3 2 1 36 36 H 1.08998 * 109.46815 * 59.99797 * 3 2 1 37 37 H 1.08994 * 109.47122 * 55.00291 * 4 2 1 38 38 H 1.09000 * 109.47085 * 294.99968 * 4 2 1 39 39 H 0.96998 * 120.00234 * 0.02562 * 7 5 4 40 40 H 1.08999 * 110.70823 * 87.87098 * 10 8 7 41 41 H 1.08996 * 110.85104 * 324.70539 * 10 8 7 42 42 H 1.08997 * 109.89177 * 262.87868 * 11 10 8 43 43 H 1.08994 * 109.89296 * 141.68633 * 11 10 8 44 44 H 1.07999 * 120.45595 * 359.97438 * 14 13 12 45 45 H 1.07998 * 120.74891 * 179.97438 * 15 14 13 46 46 H 1.08008 * 120.33328 * 179.97438 * 16 15 14 47 47 H 1.09000 * 109.46672 * 214.99728 * 18 17 16 48 48 H 1.08997 * 109.46823 * 335.00052 * 18 17 16 49 49 H 0.97001 * 119.99986 * 359.97438 * 19 18 17 50 50 H 0.96997 * 119.99941 * 180.02562 * 23 22 20 51 51 H 1.08998 * 110.37465 * 94.73106 * 29 12 11 52 52 H 1.09003 * 110.37404 * 217.07863 * 29 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 3.5419 -0.8294 1.1889 6 8 4.1449 -0.3748 0.2399 7 7 4.2148 -1.4322 2.1891 8 6 5.6748 -1.5378 2.1302 9 1 6.1119 -0.6391 1.6950 10 6 6.1093 -2.8033 1.3449 11 6 7.4984 -3.1202 1.9375 12 7 7.5597 -2.4895 3.2688 13 6 7.8447 -3.4292 4.2526 14 6 9.0292 -4.1563 4.1891 15 6 9.3002 -5.0877 5.1749 16 6 8.3744 -5.2611 6.1955 17 6 7.2200 -4.5046 6.1968 18 6 6.2119 -4.6880 7.3020 19 7 6.4512 -3.6938 8.3511 20 6 5.6528 -3.6665 9.4633 21 1 4.8465 -4.3775 9.5669 22 6 5.8798 -2.7249 10.4576 23 7 5.1122 -2.6982 11.5264 24 14 7.2739 -1.4946 10.2781 25 1 6.7753 -0.2789 9.5860 26 1 7.7839 -1.1246 11.6228 27 1 8.3709 -2.1021 9.4826 28 7 6.9902 -3.6187 5.2461 29 6 6.2677 -1.8210 3.5329 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 3.1299 1.4425 0.0005 35 1 1.6766 1.9563 -0.8900 36 1 1.6766 1.9563 0.8900 37 1 1.6054 -1.7198 1.2952 38 1 1.7516 -0.1583 2.1370 39 1 3.7324 -1.7967 2.9475 40 1 6.1849 -2.5884 0.2790 41 1 5.4175 -3.6266 1.5226 42 1 8.2778 -2.7089 1.2961 43 1 7.6239 -4.1988 2.0321 44 1 9.7275 -3.9956 3.3811 45 1 10.2113 -5.6671 5.1516 46 1 8.5560 -5.9807 6.9802 47 1 5.2063 -4.5588 6.9016 48 1 6.3103 -5.6894 7.7210 49 1 7.1751 -3.0550 8.2578 50 1 5.2706 -2.0400 12.2210 51 1 5.6081 -2.4798 4.0977 52 1 6.4268 -0.8877 4.0732 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001128077108.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:27:42 Heat of formation + Delta-G solvation = -2.455128 kcal Electronic energy + Delta-G solvation = -30190.694638 eV Core-core repulsion = 26189.460058 eV Total energy + Delta-G solvation = -4001.234580 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -41.95096 -40.95862 -39.45632 -36.93859 -36.50981 -35.52295 -33.96783 -33.44389 -32.48827 -30.33063 -30.19144 -28.60636 -27.95746 -27.50612 -24.61855 -24.40239 -23.19935 -22.35265 -22.12246 -21.40458 -20.74190 -19.90569 -18.41991 -18.26884 -17.43931 -17.15983 -16.87777 -16.69204 -16.54170 -16.35627 -15.83645 -15.43600 -15.15027 -14.83754 -14.75418 -14.70688 -14.63736 -14.57226 -14.13990 -13.99446 -13.82746 -13.41065 -13.30036 -13.20004 -13.02981 -12.90923 -12.84349 -12.72372 -12.61194 -12.55796 -12.17299 -12.08473 -11.90242 -11.84913 -11.75077 -11.58476 -11.08030 -10.96191 -10.78389 -10.61790 -10.33909 -10.11979 -9.35738 -9.14756 -8.05773 -5.39249 0.11441 0.36345 1.34000 1.36276 1.43090 1.62589 2.00371 2.44150 2.56155 2.79128 3.24817 3.29912 3.37709 3.60795 3.76053 3.80884 3.89750 3.93017 3.98214 4.02332 4.13009 4.19018 4.22416 4.27584 4.35773 4.38750 4.64228 4.67255 4.67548 4.70932 4.72413 4.74615 4.81467 4.84450 4.85754 4.88453 4.92349 5.01900 5.04487 5.09259 5.12421 5.27247 5.29082 5.37882 5.48824 5.51578 5.53165 5.62546 5.71449 6.10492 6.17621 6.50105 7.01903 7.05358 7.22733 7.76687 7.96160 9.15372 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.008975 B = 0.002684 C = 0.002224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3118.899319 B =10428.600364 C =12587.244918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.079 4.079 3 C -0.153 4.153 4 C -0.135 4.135 5 C 0.513 3.487 6 O -0.572 6.572 7 N -0.717 5.717 8 C 0.143 3.857 9 H 0.090 0.910 10 C -0.141 4.141 11 C 0.052 3.948 12 N -0.471 5.471 13 C 0.285 3.715 14 C -0.179 4.179 15 C -0.049 4.049 16 C -0.186 4.186 17 C 0.130 3.870 18 C 0.205 3.795 19 N -0.749 5.749 20 C -0.231 4.231 21 H 0.066 0.934 22 C -0.056 4.056 23 N -0.979 5.979 24 Si 0.950 3.050 25 H -0.283 1.283 26 H -0.290 1.290 27 H -0.261 1.261 28 N -0.530 5.530 29 C 0.043 3.957 30 H 0.061 0.939 31 H 0.059 0.941 32 H 0.064 0.936 33 H 0.062 0.938 34 H 0.049 0.951 35 H 0.055 0.945 36 H 0.055 0.945 37 H 0.115 0.885 38 H 0.109 0.891 39 H 0.412 0.588 40 H 0.088 0.912 41 H 0.073 0.927 42 H 0.107 0.893 43 H 0.074 0.926 44 H 0.162 0.838 45 H 0.174 0.826 46 H 0.147 0.853 47 H 0.034 0.966 48 H 0.055 0.945 49 H 0.362 0.638 50 H 0.259 0.741 51 H 0.079 0.921 52 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.030 -1.272 -27.199 27.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.098 4.098 3 C -0.210 4.210 4 C -0.175 4.175 5 C 0.302 3.698 6 O -0.451 6.451 7 N -0.369 5.369 8 C 0.037 3.963 9 H 0.108 0.892 10 C -0.181 4.181 11 C -0.073 4.073 12 N -0.189 5.189 13 C 0.052 3.948 14 C -0.202 4.202 15 C -0.074 4.074 16 C -0.208 4.208 17 C -0.007 4.007 18 C 0.079 3.921 19 N -0.394 5.394 20 C -0.361 4.361 21 H 0.084 0.916 22 C -0.248 4.248 23 N -0.629 5.629 24 Si 0.778 3.222 25 H -0.210 1.210 26 H -0.217 1.217 27 H -0.187 1.187 28 N -0.245 5.245 29 C -0.085 4.085 30 H 0.080 0.920 31 H 0.078 0.922 32 H 0.083 0.917 33 H 0.081 0.919 34 H 0.068 0.932 35 H 0.074 0.926 36 H 0.074 0.926 37 H 0.133 0.867 38 H 0.127 0.873 39 H 0.249 0.751 40 H 0.106 0.894 41 H 0.092 0.908 42 H 0.125 0.875 43 H 0.093 0.907 44 H 0.180 0.820 45 H 0.191 0.809 46 H 0.165 0.835 47 H 0.052 0.948 48 H 0.073 0.927 49 H 0.194 0.806 50 H 0.068 0.932 51 H 0.097 0.903 52 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 0.901 -0.146 -27.747 27.762 hybrid contribution 0.573 -0.083 0.994 1.150 sum 1.474 -0.228 -26.753 26.795 Atomic orbital electron populations 1.21829 0.93351 1.02525 1.02461 1.20836 0.96294 0.96028 0.96671 1.21934 1.01427 0.96000 1.01622 1.21861 0.89538 1.04582 1.01519 1.21262 0.91350 0.75900 0.81292 1.90652 1.71319 1.48757 1.34387 1.45966 1.06717 1.59816 1.24426 1.21881 0.80805 0.98897 0.94723 0.89213 1.23085 0.96434 0.97413 1.01132 1.23017 0.98346 0.99113 0.86825 1.60891 1.31645 1.24084 1.02253 1.20248 0.91819 0.90545 0.92173 1.21824 0.97158 0.98479 1.02714 1.21848 0.99058 0.95363 0.91167 1.22123 0.94796 1.02591 1.01257 1.21135 0.95106 0.91449 0.93046 1.19597 0.94772 0.92772 0.84965 1.42576 1.37608 1.38916 1.20346 1.19028 1.08823 1.12969 0.95318 0.91644 1.25362 1.01593 1.01375 0.96443 1.69850 1.42759 1.39416 1.10891 0.85492 0.80311 0.79634 0.76782 1.20998 1.21658 1.18657 1.67208 1.32850 1.19801 1.04628 1.23087 0.89553 0.99594 0.96252 0.91980 0.92188 0.91729 0.91945 0.93236 0.92569 0.92642 0.86736 0.87308 0.75143 0.89362 0.90833 0.87460 0.90730 0.82050 0.80854 0.83543 0.94761 0.92716 0.80556 0.93191 0.90273 0.90688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.57 9.19 71.98 0.66 -0.90 16 2 C -0.08 -1.18 2.57 -10.79 -0.03 -1.21 16 3 C -0.15 -2.65 8.93 71.98 0.64 -2.00 16 4 C -0.14 -1.82 5.18 29.85 0.15 -1.67 16 5 C 0.51 10.12 7.54 87.66 0.66 10.79 16 6 O -0.57 -15.23 13.71 -3.04 -0.04 -15.27 16 7 N -0.72 -12.99 5.23 -435.98 -2.28 -15.27 16 8 C 0.14 2.91 3.31 46.37 0.15 3.06 16 9 H 0.09 2.08 7.73 -2.39 -0.02 2.06 16 10 C -0.14 -2.45 6.64 31.77 0.21 -2.24 16 11 C 0.05 0.88 6.45 86.64 0.56 1.44 16 12 N -0.47 -10.97 5.20 -691.76 -3.60 -14.57 16 13 C 0.28 7.60 6.15 133.06 0.82 8.41 16 14 C -0.18 -3.76 9.05 22.50 0.20 -3.56 16 15 C -0.05 -0.97 10.17 22.44 0.23 -0.74 16 16 C -0.19 -4.90 9.71 22.37 0.22 -4.69 16 17 C 0.13 4.30 6.14 42.49 0.26 4.56 16 18 C 0.21 8.04 6.56 85.64 0.56 8.61 16 19 N -0.75 -36.16 5.40 -347.16 -1.87 -38.03 16 20 C -0.23 -13.25 10.47 84.03 0.88 -12.37 16 21 H 0.07 4.04 8.06 -2.91 -0.02 4.01 16 22 C -0.06 -3.32 5.50 84.86 0.47 -2.85 16 23 N -0.98 -62.69 13.97 21.65 0.30 -62.39 16 24 Si 0.95 46.96 27.74 68.60 1.90 48.86 16 25 H -0.28 -13.92 7.11 99.48 0.71 -13.21 16 26 H -0.29 -14.26 7.11 99.48 0.71 -13.55 16 27 H -0.26 -12.04 6.52 99.48 0.65 -11.39 16 28 N -0.53 -17.25 8.08 -181.33 -1.47 -18.72 16 29 C 0.04 1.04 5.99 86.77 0.52 1.56 16 30 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 33 H 0.06 1.11 7.95 -2.39 -0.02 1.09 16 34 H 0.05 1.12 5.95 -2.39 -0.01 1.10 16 35 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 36 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 37 H 0.11 1.08 8.14 -2.39 -0.02 1.07 16 38 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 39 H 0.41 6.23 8.52 -92.71 -0.79 5.44 16 40 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 41 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 42 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 43 H 0.07 1.17 7.16 -2.39 -0.02 1.16 16 44 H 0.16 2.40 7.99 -2.91 -0.02 2.38 16 45 H 0.17 2.08 8.06 -2.91 -0.02 2.05 16 46 H 0.15 3.46 8.06 -2.91 -0.02 3.43 16 47 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 48 H 0.06 2.02 8.04 -2.39 -0.02 2.01 16 49 H 0.36 17.45 5.52 -92.71 -0.51 16.94 16 50 H 0.26 15.80 8.31 -92.71 -0.77 15.03 16 51 H 0.08 2.17 6.42 -2.39 -0.02 2.16 16 52 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 Total: -1.00 -74.85 415.08 -0.32 -75.17 By element: Atomic # 1 Polarization: 34.45 SS G_CDS: -0.44 Total: 34.01 kcal Atomic # 6 Polarization: -0.97 SS G_CDS: 7.17 Total: 6.20 kcal Atomic # 7 Polarization: -140.06 SS G_CDS: -8.91 Total: -148.98 kcal Atomic # 8 Polarization: -15.23 SS G_CDS: -0.04 Total: -15.27 kcal Atomic # 14 Polarization: 46.96 SS G_CDS: 1.90 Total: 48.86 kcal Total: -74.85 -0.32 -75.17 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001128077108.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.715 kcal (2) G-P(sol) polarization free energy of solvation -74.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds