Wall clock time and date at job start Wed Apr 1 2020 04:27:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.46726 * 2 1 4 4 C 1.53004 * 109.47240 * 179.97438 * 3 2 1 5 5 C 1.50691 * 109.47473 * 179.97438 * 4 3 2 6 6 O 1.21279 * 120.00088 * 0.02562 * 5 4 3 7 7 N 1.34777 * 120.00171 * 179.97438 * 5 4 3 8 8 C 1.46496 * 120.00161 * 180.02562 * 7 5 4 9 9 H 1.08998 * 110.35737 * 327.14484 * 8 7 5 10 10 C 1.54598 * 110.30948 * 89.28610 * 8 7 5 11 11 C 1.54935 * 102.92144 * 140.87091 * 10 8 7 12 12 N 1.48535 * 103.23256 * 322.58965 * 11 10 8 13 13 C 1.38994 * 111.00149 * 159.71558 * 12 11 10 14 14 C 1.39139 * 119.70410 * 62.60749 * 13 12 11 15 15 C 1.38305 * 119.09622 * 179.71969 * 14 13 12 16 16 C 1.38879 * 118.50479 * 0.25546 * 15 14 13 17 17 C 1.38022 * 119.33137 * 359.97438 * 16 15 14 18 18 C 1.50704 * 119.57062 * 179.97438 * 17 16 15 19 19 N 1.46493 * 109.47074 * 95.00314 * 18 17 16 20 20 C 1.36937 * 119.99958 * 179.97438 * 19 18 17 21 21 H 1.08003 * 120.00060 * 359.97438 * 20 19 18 22 22 C 1.38816 * 120.00025 * 179.97438 * 20 19 18 23 23 N 1.31621 * 119.99882 * 179.97438 * 22 20 19 24 24 Si 1.86801 * 119.99779 * 0.02562 * 22 20 19 25 25 H 1.48494 * 109.47212 * 90.00297 * 24 22 20 26 26 H 1.48508 * 109.46709 * 209.99935 * 24 22 20 27 27 H 1.48504 * 109.47212 * 329.99678 * 24 22 20 28 28 N 1.31967 * 120.85662 * 0.02562 * 17 16 15 29 29 C 1.47899 * 105.81733 * 39.20299 * 12 11 10 30 30 H 1.08991 * 109.47105 * 300.00021 * 1 2 3 31 31 H 1.08999 * 109.47364 * 60.00354 * 1 2 3 32 32 H 1.09004 * 109.46751 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.46993 * 240.00334 * 2 1 3 34 34 H 1.08998 * 109.46931 * 119.99956 * 2 1 3 35 35 H 1.08997 * 109.47541 * 59.99764 * 3 2 1 36 36 H 1.08998 * 109.47379 * 299.99681 * 3 2 1 37 37 H 1.09005 * 109.46856 * 59.99865 * 4 3 2 38 38 H 1.09003 * 109.46985 * 300.00582 * 4 3 2 39 39 H 0.97003 * 119.99976 * 0.02562 * 7 5 4 40 40 H 1.08996 * 110.72780 * 259.23112 * 10 8 7 41 41 H 1.09004 * 110.72195 * 22.51773 * 10 8 7 42 42 H 1.08998 * 110.67034 * 204.15472 * 11 10 8 43 43 H 1.09004 * 110.66520 * 81.02755 * 11 10 8 44 44 H 1.08002 * 120.45446 * 0.02562 * 14 13 12 45 45 H 1.07998 * 120.74538 * 180.23031 * 15 14 13 46 46 H 1.08000 * 120.33634 * 180.02562 * 16 15 14 47 47 H 1.09005 * 109.46950 * 214.99908 * 18 17 16 48 48 H 1.08995 * 109.47258 * 334.99629 * 18 17 16 49 49 H 0.97007 * 120.00085 * 359.97438 * 19 18 17 50 50 H 0.96997 * 119.99486 * 179.97438 * 23 22 20 51 51 H 1.09005 * 109.91745 * 94.02348 * 29 12 11 52 52 H 1.08996 * 109.92168 * 215.12191 * 29 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 6 4.0722 2.8634 0.0000 6 8 3.2841 3.7852 -0.0004 7 7 5.3973 3.1097 0.0009 8 6 5.8856 4.4909 0.0009 9 1 5.2030 5.1344 -0.5542 10 6 6.0463 5.0033 1.4506 11 6 7.3520 5.8345 1.3816 12 7 8.2048 5.0513 0.4512 13 6 9.2140 5.8425 -0.0850 14 6 10.1712 6.4023 0.7554 15 6 11.1732 7.1826 0.2079 16 6 11.1815 7.3823 -1.1665 17 6 10.1977 6.8005 -1.9402 18 6 10.2011 7.0141 -3.4320 19 7 10.8892 5.8970 -4.0836 20 6 11.0163 5.8726 -5.4469 21 1 10.6089 6.6768 -6.0417 22 6 11.6688 4.8143 -6.0643 23 7 11.7905 4.7907 -7.3747 24 14 12.3728 3.4231 -5.0356 25 1 11.3452 2.3650 -4.8645 26 1 13.5608 2.8532 -5.7206 27 1 12.7723 3.9453 -3.7040 28 7 9.2535 6.0604 -1.3904 29 6 7.2983 4.5585 -0.6084 30 1 -0.3633 0.5138 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 1.6766 1.9564 0.8899 36 1 1.6766 1.9563 -0.8900 37 1 3.9337 0.9287 -0.8891 38 1 3.9329 0.9289 0.8908 39 1 6.0277 2.3725 0.0016 40 1 5.2026 5.6330 1.7330 41 1 6.1560 4.1697 2.1444 42 1 7.8173 5.9025 2.3649 43 1 7.1547 6.8280 0.9787 44 1 10.1352 6.2257 1.8203 45 1 11.9319 7.6270 0.8350 46 1 11.9504 7.9861 -1.6254 47 1 9.1742 7.0689 -3.7935 48 1 10.7183 7.9449 -3.6645 49 1 11.2548 5.1745 -3.5494 50 1 12.2467 4.0514 -7.8061 51 1 7.3056 5.2471 -1.4534 52 1 7.6128 3.5672 -0.9348 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001128102218.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:27:48 Heat of formation + Delta-G solvation = 16.784083 kcal Electronic energy + Delta-G solvation = -29701.755137 eV Core-core repulsion = 25701.354831 eV Total energy + Delta-G solvation = -4000.400305 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -40.92180 -39.99448 -38.41708 -35.76178 -35.18088 -34.45593 -32.53655 -32.25984 -31.14255 -30.57787 -29.21350 -28.51429 -26.19420 -24.97094 -23.42845 -22.87480 -21.82510 -21.48079 -21.00144 -20.73188 -20.56488 -17.99839 -17.35555 -17.12387 -16.64217 -16.30861 -16.21849 -15.84571 -15.02016 -14.83282 -14.69142 -14.43828 -14.24964 -14.06816 -13.99074 -13.61878 -13.30614 -13.16634 -12.93043 -12.68017 -12.65255 -12.52884 -12.37133 -12.23524 -12.12798 -11.81745 -11.71699 -11.65341 -11.52630 -11.33899 -11.16130 -11.07053 -10.92401 -10.88368 -10.20185 -10.04789 -9.94999 -9.65444 -9.57204 -9.35131 -9.17766 -8.92667 -8.14726 -7.26267 -5.78007 -3.13986 1.19678 1.38298 2.41798 2.89488 3.37575 3.42116 3.44268 3.45931 3.86512 4.19693 4.29302 4.44508 4.49045 4.58725 4.58980 4.64634 4.82315 4.89048 4.92613 4.94496 5.01294 5.13192 5.14299 5.16655 5.18120 5.30451 5.32181 5.46464 5.47848 5.48307 5.53090 5.54516 5.59576 5.63879 5.69074 5.71187 5.77469 5.79759 5.90991 5.96375 6.00114 6.03392 6.25503 6.26543 6.34042 6.42974 6.55161 6.68774 7.11524 7.25993 7.95824 7.99979 8.16370 8.40314 9.18007 9.90500 10.10057 11.40027 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.009008 B = 0.002427 C = 0.002019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3107.439075 B =11533.310171 C =13864.274624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.126 4.126 3 C -0.105 4.105 4 C -0.142 4.142 5 C 0.513 3.487 6 O -0.542 6.542 7 N -0.722 5.722 8 C 0.134 3.866 9 H 0.099 0.901 10 C -0.132 4.132 11 C 0.045 3.955 12 N -0.459 5.459 13 C 0.293 3.707 14 C -0.185 4.185 15 C -0.060 4.060 16 C -0.181 4.181 17 C 0.157 3.843 18 C 0.203 3.797 19 N -0.746 5.746 20 C -0.243 4.243 21 H 0.093 0.907 22 C 0.007 3.993 23 N -0.932 5.932 24 Si 0.884 3.116 25 H -0.284 1.284 26 H -0.290 1.290 27 H -0.279 1.279 28 N -0.502 5.502 29 C 0.029 3.971 30 H 0.054 0.946 31 H 0.055 0.945 32 H 0.053 0.947 33 H 0.062 0.938 34 H 0.061 0.939 35 H 0.068 0.932 36 H 0.070 0.930 37 H 0.094 0.906 38 H 0.093 0.907 39 H 0.403 0.597 40 H 0.081 0.919 41 H 0.081 0.919 42 H 0.091 0.909 43 H 0.057 0.943 44 H 0.131 0.869 45 H 0.134 0.866 46 H 0.137 0.863 47 H 0.046 0.954 48 H 0.046 0.954 49 H 0.362 0.638 50 H 0.260 0.740 51 H 0.098 0.902 52 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.588 -3.804 23.485 27.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.163 4.163 3 C -0.143 4.143 4 C -0.182 4.182 5 C 0.300 3.700 6 O -0.418 6.418 7 N -0.374 5.374 8 C 0.029 3.971 9 H 0.117 0.883 10 C -0.171 4.171 11 C -0.081 4.081 12 N -0.178 5.178 13 C 0.061 3.939 14 C -0.208 4.208 15 C -0.086 4.086 16 C -0.202 4.202 17 C 0.019 3.981 18 C 0.076 3.924 19 N -0.392 5.392 20 C -0.373 4.373 21 H 0.110 0.890 22 C -0.189 4.189 23 N -0.580 5.580 24 Si 0.715 3.285 25 H -0.210 1.210 26 H -0.216 1.216 27 H -0.205 1.205 28 N -0.216 5.216 29 C -0.099 4.099 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.072 0.928 33 H 0.081 0.919 34 H 0.080 0.920 35 H 0.087 0.913 36 H 0.089 0.911 37 H 0.113 0.887 38 H 0.111 0.889 39 H 0.238 0.762 40 H 0.100 0.900 41 H 0.100 0.900 42 H 0.109 0.891 43 H 0.076 0.924 44 H 0.149 0.851 45 H 0.152 0.848 46 H 0.155 0.845 47 H 0.064 0.936 48 H 0.063 0.937 49 H 0.195 0.805 50 H 0.070 0.930 51 H 0.116 0.884 52 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -15.601 -3.886 22.971 28.039 hybrid contribution 1.440 -0.607 0.806 1.758 sum -14.161 -4.493 23.777 28.037 Atomic orbital electron populations 1.21761 0.95692 1.01551 1.02037 1.21553 0.96180 0.96572 1.02027 1.21373 0.92625 0.96640 1.03635 1.21721 0.98250 0.93725 1.04515 1.20797 0.82073 0.91857 0.75292 1.90702 1.55282 1.46597 1.49262 1.46157 1.07272 1.08393 1.75583 1.21854 0.95403 0.83571 0.96296 0.88288 1.22952 0.96803 1.00269 0.97117 1.23297 0.92199 0.95608 0.97015 1.62079 1.10147 1.30242 1.15312 1.19902 0.93892 0.91048 0.89046 1.21432 0.96780 1.01995 1.00588 1.21435 0.96700 0.95453 0.95041 1.21980 1.00765 1.03334 0.94102 1.21551 0.88880 0.90143 0.97564 1.19589 0.97525 0.92162 0.83147 1.42557 1.68584 1.23418 1.04655 1.19035 1.30898 1.06584 0.80776 0.88950 1.24636 1.00710 0.98235 0.95327 1.69698 1.48004 1.33019 1.07266 0.86549 0.78904 0.83383 0.79709 1.21049 1.21647 1.20508 1.67384 1.25887 1.16761 1.11596 1.23156 0.88818 1.03311 0.94593 0.92703 0.92603 0.92777 0.91891 0.92028 0.91284 0.91135 0.88734 0.88914 0.76177 0.90004 0.90042 0.89062 0.92427 0.85094 0.84822 0.84514 0.93641 0.93670 0.80507 0.93006 0.88415 0.89310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 9.91 37.16 0.37 -0.55 16 2 C -0.13 -0.76 5.93 -26.73 -0.16 -0.92 16 3 C -0.10 -0.80 4.50 -26.73 -0.12 -0.92 16 4 C -0.14 -0.98 5.70 -27.89 -0.16 -1.14 16 5 C 0.51 5.21 7.83 -10.99 -0.09 5.12 16 6 O -0.54 -7.61 15.63 5.56 0.09 -7.52 16 7 N -0.72 -6.50 5.06 -52.49 -0.27 -6.76 16 8 C 0.13 1.40 3.34 -66.57 -0.22 1.18 16 9 H 0.10 1.21 7.56 -51.93 -0.39 0.81 16 10 C -0.13 -1.18 6.78 -24.87 -0.17 -1.35 16 11 C 0.04 0.42 6.05 -1.90 -0.01 0.41 16 12 N -0.46 -5.56 5.30 -169.24 -0.90 -6.46 16 13 C 0.29 4.21 6.21 -155.03 -0.96 3.25 16 14 C -0.19 -2.28 9.46 -39.22 -0.37 -2.65 16 15 C -0.06 -0.72 10.17 -39.32 -0.40 -1.12 16 16 C -0.18 -2.63 9.71 -39.42 -0.38 -3.01 16 17 C 0.16 2.73 6.14 -82.61 -0.51 2.22 16 18 C 0.20 4.07 6.56 -5.20 -0.03 4.04 16 19 N -0.75 -18.28 5.40 -61.09 -0.33 -18.61 16 20 C -0.24 -6.96 10.47 -15.06 -0.16 -7.12 16 21 H 0.09 2.79 8.06 -52.48 -0.42 2.37 16 22 C 0.01 0.20 5.50 -17.43 -0.10 0.11 16 23 N -0.93 -29.42 13.97 55.49 0.78 -28.64 16 24 Si 0.88 22.66 27.74 -169.99 -4.71 17.95 16 25 H -0.28 -7.26 7.11 56.52 0.40 -6.86 16 26 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 27 H -0.28 -6.85 6.52 56.52 0.37 -6.48 16 28 N -0.50 -8.56 8.06 -8.67 -0.07 -8.63 16 29 C 0.03 0.35 6.12 -2.75 -0.02 0.34 16 30 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 35 H 0.07 0.59 8.10 -51.93 -0.42 0.17 16 36 H 0.07 0.64 8.10 -51.93 -0.42 0.22 16 37 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.40 2.80 8.36 -40.82 -0.34 2.46 16 40 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.08 0.68 8.06 -51.93 -0.42 0.27 16 42 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 43 H 0.06 0.57 8.00 -51.93 -0.42 0.16 16 44 H 0.13 1.27 8.05 -52.49 -0.42 0.85 16 45 H 0.13 1.17 8.06 -52.49 -0.42 0.75 16 46 H 0.14 1.80 8.06 -52.49 -0.42 1.38 16 47 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 48 H 0.05 0.86 8.04 -51.93 -0.42 0.44 16 49 H 0.36 8.95 5.52 -40.82 -0.23 8.73 16 50 H 0.26 7.80 8.31 -40.82 -0.34 7.46 16 51 H 0.10 1.45 6.49 -51.93 -0.34 1.11 16 52 H 0.09 1.11 7.66 -51.93 -0.40 0.71 16 LS Contribution 420.12 15.07 6.33 6.33 Total: -1.00 -34.71 420.12 -11.44 -46.15 By element: Atomic # 1 Polarization: 17.17 SS G_CDS: -8.87 Total: 8.30 kcal Atomic # 6 Polarization: 1.38 SS G_CDS: -3.49 Total: -2.11 kcal Atomic # 7 Polarization: -68.31 SS G_CDS: -0.79 Total: -69.10 kcal Atomic # 8 Polarization: -7.61 SS G_CDS: 0.09 Total: -7.52 kcal Atomic # 14 Polarization: 22.66 SS G_CDS: -4.71 Total: 17.95 kcal Total LS contribution 6.33 Total: 6.33 kcal Total: -34.71 -11.44 -46.15 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001128102218.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.939 kcal (2) G-P(sol) polarization free energy of solvation -34.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.155 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds