Wall clock time and date at job start Wed Apr 1 2020 04:27:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.46726 * 2 1 4 4 C 1.53004 * 109.47240 * 179.97438 * 3 2 1 5 5 C 1.50691 * 109.47473 * 179.97438 * 4 3 2 6 6 O 1.21279 * 120.00088 * 0.02562 * 5 4 3 7 7 N 1.34777 * 120.00171 * 179.97438 * 5 4 3 8 8 C 1.46496 * 120.00161 * 180.02562 * 7 5 4 9 9 H 1.08998 * 110.35737 * 327.14484 * 8 7 5 10 10 C 1.54598 * 110.30948 * 89.28610 * 8 7 5 11 11 C 1.54935 * 102.92144 * 140.87091 * 10 8 7 12 12 N 1.48535 * 103.23256 * 322.58965 * 11 10 8 13 13 C 1.38994 * 111.00149 * 159.71558 * 12 11 10 14 14 C 1.39139 * 119.70410 * 62.60749 * 13 12 11 15 15 C 1.38305 * 119.09622 * 179.71969 * 14 13 12 16 16 C 1.38879 * 118.50479 * 0.25546 * 15 14 13 17 17 C 1.38022 * 119.33137 * 359.97438 * 16 15 14 18 18 C 1.50704 * 119.57062 * 179.97438 * 17 16 15 19 19 N 1.46493 * 109.47074 * 95.00314 * 18 17 16 20 20 C 1.36937 * 119.99958 * 179.97438 * 19 18 17 21 21 H 1.08003 * 120.00060 * 359.97438 * 20 19 18 22 22 C 1.38816 * 120.00025 * 179.97438 * 20 19 18 23 23 N 1.31621 * 119.99882 * 179.97438 * 22 20 19 24 24 Si 1.86801 * 119.99779 * 0.02562 * 22 20 19 25 25 H 1.48494 * 109.47212 * 90.00297 * 24 22 20 26 26 H 1.48508 * 109.46709 * 209.99935 * 24 22 20 27 27 H 1.48504 * 109.47212 * 329.99678 * 24 22 20 28 28 N 1.31967 * 120.85662 * 0.02562 * 17 16 15 29 29 C 1.47899 * 105.81733 * 39.20299 * 12 11 10 30 30 H 1.08991 * 109.47105 * 300.00021 * 1 2 3 31 31 H 1.08999 * 109.47364 * 60.00354 * 1 2 3 32 32 H 1.09004 * 109.46751 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.46993 * 240.00334 * 2 1 3 34 34 H 1.08998 * 109.46931 * 119.99956 * 2 1 3 35 35 H 1.08997 * 109.47541 * 59.99764 * 3 2 1 36 36 H 1.08998 * 109.47379 * 299.99681 * 3 2 1 37 37 H 1.09005 * 109.46856 * 59.99865 * 4 3 2 38 38 H 1.09003 * 109.46985 * 300.00582 * 4 3 2 39 39 H 0.97003 * 119.99976 * 0.02562 * 7 5 4 40 40 H 1.08996 * 110.72780 * 259.23112 * 10 8 7 41 41 H 1.09004 * 110.72195 * 22.51773 * 10 8 7 42 42 H 1.08998 * 110.67034 * 204.15472 * 11 10 8 43 43 H 1.09004 * 110.66520 * 81.02755 * 11 10 8 44 44 H 1.08002 * 120.45446 * 0.02562 * 14 13 12 45 45 H 1.07998 * 120.74538 * 180.23031 * 15 14 13 46 46 H 1.08000 * 120.33634 * 180.02562 * 16 15 14 47 47 H 1.09005 * 109.46950 * 214.99908 * 18 17 16 48 48 H 1.08995 * 109.47258 * 334.99629 * 18 17 16 49 49 H 0.97007 * 120.00085 * 359.97438 * 19 18 17 50 50 H 0.96997 * 119.99486 * 179.97438 * 23 22 20 51 51 H 1.09005 * 109.91745 * 94.02348 * 29 12 11 52 52 H 1.08996 * 109.92168 * 215.12191 * 29 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 6 4.0722 2.8634 0.0000 6 8 3.2841 3.7852 -0.0004 7 7 5.3973 3.1097 0.0009 8 6 5.8856 4.4909 0.0009 9 1 5.2030 5.1344 -0.5542 10 6 6.0463 5.0033 1.4506 11 6 7.3520 5.8345 1.3816 12 7 8.2048 5.0513 0.4512 13 6 9.2140 5.8425 -0.0850 14 6 10.1712 6.4023 0.7554 15 6 11.1732 7.1826 0.2079 16 6 11.1815 7.3823 -1.1665 17 6 10.1977 6.8005 -1.9402 18 6 10.2011 7.0141 -3.4320 19 7 10.8892 5.8970 -4.0836 20 6 11.0163 5.8726 -5.4469 21 1 10.6089 6.6768 -6.0417 22 6 11.6688 4.8143 -6.0643 23 7 11.7905 4.7907 -7.3747 24 14 12.3728 3.4231 -5.0356 25 1 11.3452 2.3650 -4.8645 26 1 13.5608 2.8532 -5.7206 27 1 12.7723 3.9453 -3.7040 28 7 9.2535 6.0604 -1.3904 29 6 7.2983 4.5585 -0.6084 30 1 -0.3633 0.5138 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 1.6766 1.9564 0.8899 36 1 1.6766 1.9563 -0.8900 37 1 3.9337 0.9287 -0.8891 38 1 3.9329 0.9289 0.8908 39 1 6.0277 2.3725 0.0016 40 1 5.2026 5.6330 1.7330 41 1 6.1560 4.1697 2.1444 42 1 7.8173 5.9025 2.3649 43 1 7.1547 6.8280 0.9787 44 1 10.1352 6.2257 1.8203 45 1 11.9319 7.6270 0.8350 46 1 11.9504 7.9861 -1.6254 47 1 9.1742 7.0689 -3.7935 48 1 10.7183 7.9449 -3.6645 49 1 11.2548 5.1745 -3.5494 50 1 12.2467 4.0514 -7.8061 51 1 7.3056 5.2471 -1.4534 52 1 7.6128 3.5672 -0.9348 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001128102218.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:27:47 Heat of formation + Delta-G solvation = -6.701650 kcal Electronic energy + Delta-G solvation = -29702.773555 eV Core-core repulsion = 25701.354831 eV Total energy + Delta-G solvation = -4001.418723 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -41.91328 -40.89668 -39.37940 -36.90351 -36.27546 -35.56236 -33.98024 -33.45468 -32.56820 -31.41032 -30.22849 -29.52795 -27.69638 -25.65955 -24.59099 -24.34795 -23.04234 -22.18226 -22.10230 -21.61280 -21.32096 -19.96039 -18.40735 -18.03319 -17.48092 -17.35893 -16.93369 -16.81620 -16.73186 -16.00945 -15.75568 -15.52383 -15.41174 -15.11772 -14.81859 -14.66410 -14.54206 -14.31917 -14.11906 -13.94314 -13.68828 -13.46125 -13.42218 -13.34556 -13.24050 -12.93091 -12.90051 -12.71366 -12.49575 -12.20737 -12.18216 -12.08351 -11.97643 -11.86561 -11.86294 -11.45616 -11.09493 -10.97827 -10.87249 -10.69264 -10.35780 -10.11726 -9.37888 -9.19192 -8.06976 -5.41200 0.10119 0.35783 1.32658 1.35678 1.43036 1.62442 2.13351 2.43312 2.48947 2.76194 3.22158 3.27412 3.36373 3.67963 3.77504 3.79311 3.91837 3.93586 4.04761 4.06671 4.12801 4.18426 4.22519 4.28816 4.34983 4.37026 4.46726 4.61283 4.64434 4.65972 4.71511 4.76403 4.81291 4.83625 4.89919 4.91724 4.93883 4.99746 5.03211 5.09481 5.11144 5.25729 5.27828 5.38423 5.44196 5.50296 5.52533 5.57455 5.69193 6.08806 6.16108 6.52652 7.00048 7.04643 7.23748 7.74275 7.94715 9.14169 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.009008 B = 0.002427 C = 0.002019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3107.439075 B =11533.310171 C =13864.274624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.121 4.121 3 C -0.103 4.103 4 C -0.135 4.135 5 C 0.509 3.491 6 O -0.587 6.587 7 N -0.712 5.712 8 C 0.139 3.861 9 H 0.074 0.926 10 C -0.121 4.121 11 C 0.047 3.953 12 N -0.455 5.455 13 C 0.277 3.723 14 C -0.172 4.172 15 C -0.050 4.050 16 C -0.183 4.183 17 C 0.127 3.873 18 C 0.204 3.796 19 N -0.747 5.747 20 C -0.235 4.235 21 H 0.062 0.938 22 C -0.059 4.059 23 N -0.979 5.979 24 Si 0.955 3.045 25 H -0.282 1.282 26 H -0.288 1.288 27 H -0.260 1.260 28 N -0.533 5.533 29 C 0.035 3.965 30 H 0.052 0.948 31 H 0.047 0.953 32 H 0.063 0.937 33 H 0.068 0.932 34 H 0.075 0.925 35 H 0.056 0.944 36 H 0.048 0.952 37 H 0.111 0.889 38 H 0.121 0.879 39 H 0.416 0.584 40 H 0.083 0.917 41 H 0.094 0.906 42 H 0.120 0.880 43 H 0.050 0.950 44 H 0.166 0.834 45 H 0.176 0.824 46 H 0.147 0.853 47 H 0.028 0.972 48 H 0.055 0.945 49 H 0.363 0.637 50 H 0.260 0.740 51 H 0.066 0.934 52 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.481 -5.194 27.671 31.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.158 4.158 3 C -0.141 4.141 4 C -0.174 4.174 5 C 0.297 3.703 6 O -0.467 6.467 7 N -0.365 5.365 8 C 0.032 3.968 9 H 0.092 0.908 10 C -0.160 4.160 11 C -0.078 4.078 12 N -0.174 5.174 13 C 0.045 3.955 14 C -0.194 4.194 15 C -0.075 4.075 16 C -0.205 4.205 17 C -0.010 4.010 18 C 0.078 3.922 19 N -0.393 5.393 20 C -0.365 4.365 21 H 0.080 0.920 22 C -0.251 4.251 23 N -0.629 5.629 24 Si 0.782 3.218 25 H -0.208 1.208 26 H -0.215 1.215 27 H -0.185 1.185 28 N -0.248 5.248 29 C -0.093 4.093 30 H 0.071 0.929 31 H 0.066 0.934 32 H 0.082 0.918 33 H 0.087 0.913 34 H 0.094 0.906 35 H 0.075 0.925 36 H 0.067 0.933 37 H 0.129 0.871 38 H 0.139 0.861 39 H 0.253 0.747 40 H 0.101 0.899 41 H 0.113 0.887 42 H 0.138 0.862 43 H 0.068 0.932 44 H 0.184 0.816 45 H 0.193 0.807 46 H 0.165 0.835 47 H 0.046 0.954 48 H 0.073 0.927 49 H 0.196 0.804 50 H 0.069 0.931 51 H 0.084 0.916 52 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -14.488 -5.264 27.196 31.261 hybrid contribution 1.002 -0.072 -0.464 1.107 sum -13.485 -5.336 26.732 30.413 Atomic orbital electron populations 1.21791 0.95909 1.02033 1.01607 1.21528 0.96012 0.95348 1.02955 1.21331 0.93339 0.97480 1.01977 1.21757 0.97476 0.91585 1.06590 1.21425 0.81836 0.92826 0.74163 1.90686 1.56363 1.48218 1.51437 1.46078 1.07362 1.08192 1.74866 1.21655 0.93708 0.84200 0.97189 0.90751 1.22885 0.96726 1.00576 0.95819 1.23417 0.92041 0.94871 0.97489 1.62186 1.10040 1.30198 1.14947 1.20304 0.95107 0.91557 0.88509 1.21854 0.95372 1.00213 1.01986 1.21877 0.97143 0.94437 0.94088 1.22129 0.99978 1.02961 0.95388 1.21104 0.91060 0.92903 0.95955 1.19587 0.95954 0.90996 0.85702 1.42538 1.68898 1.24732 1.03145 1.19026 1.29481 1.05414 0.82607 0.91990 1.25438 1.01886 1.01205 0.96529 1.69867 1.49628 1.34162 1.09250 0.85418 0.77933 0.79740 0.78697 1.20805 1.21458 1.18520 1.67251 1.26385 1.17602 1.13521 1.22979 0.90015 1.02204 0.94139 0.92884 0.93377 0.91800 0.91304 0.90635 0.92531 0.93339 0.87102 0.86087 0.74698 0.89854 0.88701 0.86238 0.93201 0.81634 0.80653 0.83546 0.95352 0.92697 0.80439 0.93140 0.91566 0.89723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.75 9.91 71.98 0.71 -1.04 16 2 C -0.12 -1.28 5.93 30.59 0.18 -1.09 16 3 C -0.10 -1.52 4.50 30.59 0.14 -1.39 16 4 C -0.13 -1.62 5.70 29.85 0.17 -1.45 16 5 C 0.51 10.07 7.83 87.65 0.69 10.76 16 6 O -0.59 -16.93 15.63 -3.03 -0.05 -16.98 16 7 N -0.71 -12.18 5.06 -438.38 -2.22 -14.39 16 8 C 0.14 2.88 3.34 45.87 0.15 3.03 16 9 H 0.07 1.93 7.56 -2.39 -0.02 1.91 16 10 C -0.12 -1.94 6.78 31.80 0.22 -1.73 16 11 C 0.05 0.77 6.05 86.65 0.52 1.29 16 12 N -0.45 -10.15 5.30 -689.34 -3.65 -13.80 16 13 C 0.28 7.43 6.21 133.07 0.83 8.26 16 14 C -0.17 -3.52 9.46 22.50 0.21 -3.30 16 15 C -0.05 -0.99 10.17 22.44 0.23 -0.76 16 16 C -0.18 -4.93 9.71 22.37 0.22 -4.71 16 17 C 0.13 4.37 6.14 42.49 0.26 4.63 16 18 C 0.20 8.40 6.56 85.64 0.56 8.96 16 19 N -0.75 -37.09 5.40 -347.18 -1.87 -38.96 16 20 C -0.23 -13.82 10.47 84.03 0.88 -12.94 16 21 H 0.06 3.94 8.06 -2.91 -0.02 3.92 16 22 C -0.06 -3.55 5.50 84.86 0.47 -3.08 16 23 N -0.98 -63.52 13.97 21.65 0.30 -63.22 16 24 Si 0.95 47.15 27.74 68.60 1.90 49.06 16 25 H -0.28 -13.72 7.11 99.48 0.71 -13.01 16 26 H -0.29 -14.07 7.11 99.48 0.71 -13.36 16 27 H -0.26 -11.91 6.52 99.48 0.65 -11.26 16 28 N -0.53 -18.06 8.06 -181.34 -1.46 -19.53 16 29 C 0.03 0.85 6.12 86.45 0.53 1.38 16 30 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 32 H 0.06 0.59 8.14 -2.38 -0.02 0.57 16 33 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 34 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 35 H 0.06 0.97 8.10 -2.39 -0.02 0.95 16 36 H 0.05 0.92 8.10 -2.39 -0.02 0.90 16 37 H 0.11 1.02 8.14 -2.38 -0.02 1.01 16 38 H 0.12 0.82 8.14 -2.39 -0.02 0.80 16 39 H 0.42 5.04 8.36 -92.71 -0.77 4.27 16 40 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 41 H 0.09 1.30 8.06 -2.39 -0.02 1.29 16 42 H 0.12 1.31 8.14 -2.39 -0.02 1.30 16 43 H 0.05 0.91 8.00 -2.38 -0.02 0.89 16 44 H 0.17 2.23 8.05 -2.91 -0.02 2.20 16 45 H 0.18 2.03 8.06 -2.91 -0.02 2.00 16 46 H 0.15 3.54 8.06 -2.91 -0.02 3.52 16 47 H 0.03 1.25 8.14 -2.38 -0.02 1.23 16 48 H 0.06 2.13 8.04 -2.39 -0.02 2.11 16 49 H 0.36 17.75 5.52 -92.70 -0.51 17.24 16 50 H 0.26 15.98 8.31 -92.71 -0.77 15.20 16 51 H 0.07 2.07 6.49 -2.38 -0.02 2.06 16 52 H 0.08 2.10 7.66 -2.39 -0.02 2.08 16 Total: -1.00 -78.97 420.12 -0.51 -79.48 By element: Atomic # 1 Polarization: 31.95 SS G_CDS: -0.43 Total: 31.52 kcal Atomic # 6 Polarization: -0.13 SS G_CDS: 6.97 Total: 6.83 kcal Atomic # 7 Polarization: -141.00 SS G_CDS: -8.90 Total: -149.90 kcal Atomic # 8 Polarization: -16.93 SS G_CDS: -0.05 Total: -16.98 kcal Atomic # 14 Polarization: 47.15 SS G_CDS: 1.90 Total: 49.06 kcal Total: -78.97 -0.51 -79.48 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001128102218.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.775 kcal (2) G-P(sol) polarization free energy of solvation -78.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds