Wall clock time and date at job start Wed Apr 1 2020 04:27:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50697 * 109.47498 * 2 1 4 4 C 1.32989 * 119.99938 * 88.41839 * 3 2 1 5 5 C 1.47106 * 120.00170 * 352.40124 * 4 3 2 6 6 O 1.21610 * 119.99678 * 356.92167 * 5 4 3 7 7 N 1.34780 * 120.00040 * 176.93048 * 5 4 3 8 8 C 1.46495 * 119.99693 * 179.97438 * 7 5 4 9 9 C 1.50700 * 109.47177 * 179.97438 * 8 7 5 10 10 C 1.35319 * 126.04047 * 259.97996 * 9 8 7 11 11 N 1.34947 * 107.74742 * 180.02562 * 10 9 8 12 12 H 0.97001 * 126.03458 * 180.02562 * 11 10 9 13 13 N 1.40086 * 107.92337 * 359.75294 * 11 10 9 14 14 C 1.30841 * 108.20353 * 0.41712 * 13 11 10 15 15 C 1.50703 * 125.89376 * 179.85257 * 14 13 11 16 16 H 1.09001 * 110.77676 * 181.47523 * 15 14 13 17 17 C 1.55393 * 110.85609 * 304.77445 * 15 14 13 18 18 C 1.54912 * 101.66734 * 153.70074 * 17 15 14 19 19 N 1.47424 * 104.83192 * 323.07648 * 18 17 15 20 20 C 1.36935 * 125.64701 * 204.09372 * 19 18 17 21 21 H 1.08000 * 119.99902 * 162.21296 * 20 19 18 22 22 C 1.38815 * 120.00227 * 342.20578 * 20 19 18 23 23 N 1.31621 * 119.99700 * 350.70414 * 22 20 19 24 24 Si 1.86796 * 120.00144 * 170.69563 * 22 20 19 25 25 H 1.48497 * 109.46895 * 94.95826 * 24 22 20 26 26 H 1.48496 * 109.47121 * 214.95500 * 24 22 20 27 27 H 1.48502 * 109.47303 * 334.96058 * 24 22 20 28 28 C 1.47025 * 108.70206 * 24.12553 * 19 18 17 29 29 C 1.50703 * 120.00141 * 268.42141 * 3 2 1 30 30 C 1.52994 * 109.47139 * 274.99998 * 29 3 2 31 31 H 1.08999 * 109.47430 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47344 * 300.00370 * 1 2 3 33 33 H 1.09002 * 109.47067 * 59.99841 * 1 2 3 34 34 H 1.09010 * 109.46808 * 239.99946 * 2 1 3 35 35 H 1.09002 * 109.47067 * 120.00159 * 2 1 3 36 36 H 1.07997 * 120.00069 * 172.39551 * 4 3 2 37 37 H 0.96998 * 120.00140 * 359.97438 * 7 5 4 38 38 H 1.09000 * 109.47370 * 59.99882 * 8 7 5 39 39 H 1.08998 * 109.47271 * 299.99739 * 8 7 5 40 40 H 1.08001 * 126.12583 * 359.97438 * 10 9 8 41 41 H 1.09004 * 110.89083 * 35.62837 * 17 15 14 42 42 H 1.08996 * 111.03977 * 271.83663 * 17 15 14 43 43 H 1.09003 * 110.36458 * 204.23325 * 18 17 15 44 44 H 1.08997 * 110.45972 * 81.96271 * 18 17 15 45 45 H 0.96995 * 119.99785 * 180.02562 * 23 22 20 46 46 H 1.09001 * 109.87689 * 118.35722 * 28 19 18 47 47 H 1.08993 * 109.88437 * 239.36720 * 28 19 18 48 48 H 1.09005 * 109.46743 * 34.99809 * 29 3 2 49 49 H 1.09002 * 109.46933 * 154.99757 * 29 3 2 50 50 H 1.08996 * 109.47033 * 299.99758 * 30 29 3 51 51 H 1.09002 * 109.47404 * 60.00048 * 30 29 3 52 52 H 1.08998 * 109.46990 * 179.97438 * 30 29 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.2241 2.0582 1.1513 5 6 1.7904 1.4418 2.4145 6 8 1.2064 0.3751 2.4015 7 7 2.0400 2.0592 3.5863 8 6 1.6075 1.4455 4.8443 9 6 2.0058 2.3298 5.9977 10 6 3.0811 2.1554 6.8004 11 7 3.0846 3.1553 7.7065 12 1 3.7401 3.2862 8.4094 13 7 1.9779 3.9745 7.4487 14 6 1.3289 3.4756 6.4280 15 6 0.0728 4.0416 5.8174 16 1 -0.2731 3.4158 4.9946 17 6 -1.0398 4.2027 6.8901 18 6 -1.8896 5.3507 6.2902 19 7 -0.9103 6.2575 5.6639 20 6 -1.0994 7.5920 5.4221 21 1 -0.2504 8.2318 5.2314 22 6 -2.3821 8.1225 5.4219 23 7 -3.4255 7.3216 5.4708 24 14 -2.6276 9.9730 5.3524 25 1 -2.8352 10.3921 3.9430 26 1 -3.8170 10.3452 6.1598 27 1 -1.4257 10.6527 5.8990 28 6 0.3024 5.4915 5.3414 29 6 2.3175 2.1192 -1.3046 30 6 3.7336 1.7734 -1.7693 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3634 0.5139 0.8900 33 1 -0.3633 0.5139 -0.8900 34 1 1.8933 -0.5139 -0.8901 35 1 1.8933 -0.5139 0.8900 36 1 2.6983 3.0285 1.1588 37 1 2.5060 2.9098 3.5967 38 1 2.0813 0.4700 4.9544 39 1 0.5243 1.3244 4.8359 40 1 3.8062 1.3581 6.7291 41 1 -0.6143 4.4926 7.8509 42 1 -1.6276 3.2897 6.9845 43 1 -2.4370 5.8688 7.0776 44 1 -2.5800 4.9625 5.5415 45 1 -4.3218 7.6923 5.4703 46 1 0.4743 5.5056 4.2651 47 1 1.1603 5.9202 5.8592 48 1 1.5986 1.7928 -2.0561 49 1 2.2337 3.1971 -1.1655 50 1 4.4524 2.0998 -1.0178 51 1 3.8174 0.6956 -1.9084 52 1 3.9396 2.2783 -2.7132 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001130372674.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:27:12 Heat of formation + Delta-G solvation = 65.410073 kcal Electronic energy + Delta-G solvation = -30593.175961 eV Core-core repulsion = 26594.884237 eV Total energy + Delta-G solvation = -3998.291724 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.33425 -39.82482 -37.25347 -36.78595 -34.85262 -33.04468 -32.02503 -31.43915 -30.93763 -29.75260 -29.06246 -27.53019 -26.12515 -24.58444 -24.22109 -23.36776 -22.01442 -20.88442 -20.32137 -20.10697 -18.83824 -18.61139 -17.74597 -16.98507 -16.71344 -15.83988 -15.20454 -15.11562 -14.82130 -14.67587 -14.56500 -14.31479 -14.18893 -13.97527 -13.57951 -13.42415 -12.98941 -12.80321 -12.66579 -12.60765 -12.35673 -12.15050 -11.99121 -11.90439 -11.82953 -11.55390 -11.47603 -10.96255 -10.90579 -10.84837 -10.78087 -10.72963 -10.51879 -10.08647 -9.96876 -9.76396 -9.65074 -9.56073 -9.25491 -9.11957 -8.83355 -8.58002 -8.51285 -6.64898 -5.69537 -3.04409 1.32344 1.84994 2.63617 2.88463 3.33912 3.43072 3.48777 3.51251 3.56933 4.54022 4.54449 4.61233 4.68859 4.71835 4.94058 5.03402 5.08158 5.18858 5.23629 5.28927 5.41821 5.44362 5.51554 5.51796 5.59682 5.60202 5.62429 5.66459 5.72474 5.78748 5.89616 5.92950 5.96578 5.99046 6.09864 6.12516 6.34156 6.39817 6.43081 6.53719 6.55179 6.59840 6.61934 6.75085 6.78913 7.00890 7.27079 7.49801 7.63677 7.69992 7.79778 7.83300 8.34217 8.34501 9.25394 9.87497 10.58682 11.44053 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.008211 B = 0.002974 C = 0.002431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3409.384517 B = 9413.454940 C =11515.390598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.100 4.100 3 C -0.026 4.026 4 C -0.228 4.228 5 C 0.544 3.456 6 O -0.540 6.540 7 N -0.720 5.720 8 C 0.204 3.796 9 C -0.262 4.262 10 C 0.074 3.926 11 N -0.481 5.481 12 H 0.438 0.562 13 N -0.279 5.279 14 C 0.121 3.879 15 C -0.027 4.027 16 H 0.089 0.911 17 C -0.133 4.133 18 C 0.175 3.825 19 N -0.599 5.599 20 C -0.229 4.229 21 H 0.072 0.928 22 C -0.004 4.004 23 N -0.914 5.914 24 Si 0.908 3.092 25 H -0.289 1.289 26 H -0.290 1.290 27 H -0.280 1.280 28 C 0.151 3.849 29 C -0.099 4.099 30 C -0.146 4.146 31 H 0.052 0.948 32 H 0.067 0.933 33 H 0.042 0.958 34 H 0.056 0.944 35 H 0.101 0.899 36 H 0.124 0.876 37 H 0.401 0.599 38 H 0.069 0.931 39 H 0.075 0.925 40 H 0.174 0.826 41 H 0.065 0.935 42 H 0.060 0.940 43 H 0.055 0.945 44 H 0.034 0.966 45 H 0.252 0.748 46 H 0.021 0.979 47 H 0.027 0.973 48 H 0.078 0.922 49 H 0.076 0.924 50 H 0.057 0.943 51 H 0.056 0.944 52 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.319 -16.139 -6.670 23.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.136 4.136 3 C -0.028 4.028 4 C -0.249 4.249 5 C 0.334 3.666 6 O -0.421 6.421 7 N -0.371 5.371 8 C 0.080 3.920 9 C -0.274 4.274 10 C -0.075 4.075 11 N -0.187 5.187 12 H 0.282 0.718 13 N -0.100 5.100 14 C -0.047 4.047 15 C -0.048 4.048 16 H 0.107 0.893 17 C -0.172 4.172 18 C 0.050 3.950 19 N -0.325 5.325 20 C -0.358 4.358 21 H 0.090 0.910 22 C -0.201 4.201 23 N -0.560 5.560 24 Si 0.739 3.261 25 H -0.216 1.216 26 H -0.217 1.217 27 H -0.206 1.206 28 C 0.024 3.976 29 C -0.136 4.136 30 C -0.203 4.203 31 H 0.071 0.929 32 H 0.086 0.914 33 H 0.061 0.939 34 H 0.074 0.926 35 H 0.119 0.881 36 H 0.142 0.858 37 H 0.236 0.764 38 H 0.087 0.913 39 H 0.094 0.906 40 H 0.191 0.809 41 H 0.084 0.916 42 H 0.079 0.921 43 H 0.074 0.926 44 H 0.052 0.948 45 H 0.063 0.937 46 H 0.038 0.962 47 H 0.045 0.955 48 H 0.096 0.904 49 H 0.095 0.905 50 H 0.076 0.924 51 H 0.075 0.925 52 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 15.774 -15.822 -5.779 23.077 hybrid contribution 0.515 0.911 -0.178 1.062 sum 16.289 -14.911 -5.957 22.872 Atomic orbital electron populations 1.21553 0.94138 1.01567 1.01748 1.20937 0.97162 0.92477 1.03065 1.22533 0.90440 0.95714 0.94077 1.22396 1.07930 1.02331 0.92212 1.18527 0.79332 0.84631 0.84072 1.90719 1.42002 1.22045 1.87321 1.46089 1.59968 1.25391 1.05668 1.19333 1.00028 0.93535 0.79097 1.19971 1.00349 1.02589 1.04470 1.22353 0.99151 0.94182 0.91831 1.46367 1.23762 1.20938 1.27642 0.71839 1.77524 0.97847 1.15709 1.18959 1.22255 0.96416 0.93011 0.93036 1.20754 0.89088 0.97256 0.97728 0.89275 1.23093 0.96560 0.99981 0.97612 1.21319 0.90423 0.87707 0.95561 1.44384 1.12677 1.05768 1.69646 1.18952 0.91995 0.82278 1.42555 0.91042 1.24915 0.95522 0.97897 1.01808 1.69956 0.97353 1.32813 1.55897 0.86165 0.77330 0.85170 0.77476 1.21586 1.21652 1.20586 1.21254 0.91567 0.88230 0.96554 1.20773 0.98020 1.00379 0.94418 1.21713 0.95570 1.01839 1.01218 0.92890 0.91369 0.93881 0.92577 0.88106 0.85779 0.76445 0.91263 0.90638 0.80892 0.91610 0.92144 0.92630 0.94788 0.93746 0.96153 0.95530 0.90364 0.90541 0.92426 0.92464 0.92206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.49 9.39 37.16 0.35 -1.14 16 2 C -0.10 -1.04 5.34 -27.89 -0.15 -1.19 16 3 C -0.03 -0.26 4.61 -101.17 -0.47 -0.72 16 4 C -0.23 -2.43 9.60 -37.81 -0.36 -2.79 16 5 C 0.54 6.83 7.64 -12.66 -0.10 6.73 16 6 O -0.54 -7.96 11.33 5.27 0.06 -7.90 16 7 N -0.72 -8.21 5.54 -62.67 -0.35 -8.56 16 8 C 0.20 2.37 5.67 -5.20 -0.03 2.34 16 9 C -0.26 -3.19 5.47 -105.05 -0.57 -3.76 16 10 C 0.07 0.71 11.90 -17.22 -0.20 0.51 16 11 N -0.48 -5.25 7.36 30.45 0.22 -5.02 16 12 H 0.44 3.25 8.96 -182.61 -1.64 1.62 16 13 N -0.28 -4.44 12.34 33.67 0.42 -4.03 16 14 C 0.12 1.89 5.77 -82.41 -0.48 1.42 16 15 C -0.03 -0.50 3.37 -89.81 -0.30 -0.80 16 16 H 0.09 1.57 7.27 -51.93 -0.38 1.19 16 17 C -0.13 -2.64 6.53 -24.45 -0.16 -2.80 16 18 C 0.17 4.35 5.36 -2.53 -0.01 4.33 16 19 N -0.60 -15.81 3.39 -170.07 -0.58 -16.38 16 20 C -0.23 -6.57 10.20 -15.06 -0.15 -6.73 16 21 H 0.07 2.00 7.85 -52.49 -0.41 1.59 16 22 C 0.00 -0.12 5.38 -17.43 -0.09 -0.21 16 23 N -0.91 -27.34 11.02 55.49 0.61 -26.73 16 24 Si 0.91 22.42 29.56 -169.99 -5.03 17.40 16 25 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 26 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 27 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 28 C 0.15 3.28 6.82 -3.06 -0.02 3.26 16 29 C -0.10 -0.77 6.09 -27.88 -0.17 -0.94 16 30 C -0.15 -0.96 9.89 37.15 0.37 -0.59 16 31 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.07 0.93 6.62 -51.93 -0.34 0.59 16 33 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.06 0.49 8.11 -51.92 -0.42 0.07 16 35 H 0.10 1.24 5.77 -51.93 -0.30 0.94 16 36 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 37 H 0.40 4.21 8.45 -40.82 -0.34 3.87 16 38 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.08 1.00 7.70 -51.93 -0.40 0.60 16 40 H 0.17 0.96 8.06 -52.49 -0.42 0.54 16 41 H 0.07 1.34 7.89 -51.93 -0.41 0.93 16 42 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 43 H 0.06 1.52 7.48 -51.93 -0.39 1.13 16 44 H 0.03 0.91 7.89 -51.93 -0.41 0.50 16 45 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 46 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 47 H 0.03 0.60 7.67 -51.93 -0.40 0.20 16 48 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 49 H 0.08 0.59 8.04 -51.93 -0.42 0.17 16 50 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 51 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 52 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 LS Contribution 418.28 15.07 6.30 6.30 Total: -1.00 -34.25 418.28 -10.94 -45.18 By element: Atomic # 1 Polarization: 12.88 SS G_CDS: -10.04 Total: 2.83 kcal Atomic # 6 Polarization: -0.53 SS G_CDS: -2.56 Total: -3.09 kcal Atomic # 7 Polarization: -61.05 SS G_CDS: 0.33 Total: -60.73 kcal Atomic # 8 Polarization: -7.96 SS G_CDS: 0.06 Total: -7.90 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -5.03 Total: 17.40 kcal Total LS contribution 6.30 Total: 6.30 kcal Total: -34.25 -10.94 -45.18 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001130372674.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.593 kcal (2) G-P(sol) polarization free energy of solvation -34.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.183 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds