Wall clock time and date at job start Wed Apr 1 2020 04:27:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50697 * 109.47498 * 2 1 4 4 C 1.32989 * 119.99938 * 88.41839 * 3 2 1 5 5 C 1.47106 * 120.00170 * 352.40124 * 4 3 2 6 6 O 1.21610 * 119.99678 * 356.92167 * 5 4 3 7 7 N 1.34780 * 120.00040 * 176.93048 * 5 4 3 8 8 C 1.46495 * 119.99693 * 179.97438 * 7 5 4 9 9 C 1.50700 * 109.47177 * 179.97438 * 8 7 5 10 10 C 1.35319 * 126.04047 * 259.97996 * 9 8 7 11 11 N 1.34947 * 107.74742 * 180.02562 * 10 9 8 12 12 H 0.97001 * 126.03458 * 180.02562 * 11 10 9 13 13 N 1.40086 * 107.92337 * 359.75294 * 11 10 9 14 14 C 1.30841 * 108.20353 * 0.41712 * 13 11 10 15 15 C 1.50703 * 125.89376 * 179.85257 * 14 13 11 16 16 H 1.09001 * 110.77676 * 181.47523 * 15 14 13 17 17 C 1.55393 * 110.85609 * 304.77445 * 15 14 13 18 18 C 1.54912 * 101.66734 * 153.70074 * 17 15 14 19 19 N 1.47424 * 104.83192 * 323.07648 * 18 17 15 20 20 C 1.36935 * 125.64701 * 204.09372 * 19 18 17 21 21 H 1.08000 * 119.99902 * 162.21296 * 20 19 18 22 22 C 1.38815 * 120.00227 * 342.20578 * 20 19 18 23 23 N 1.31621 * 119.99700 * 350.70414 * 22 20 19 24 24 Si 1.86796 * 120.00144 * 170.69563 * 22 20 19 25 25 H 1.48497 * 109.46895 * 94.95826 * 24 22 20 26 26 H 1.48496 * 109.47121 * 214.95500 * 24 22 20 27 27 H 1.48502 * 109.47303 * 334.96058 * 24 22 20 28 28 C 1.47025 * 108.70206 * 24.12553 * 19 18 17 29 29 C 1.50703 * 120.00141 * 268.42141 * 3 2 1 30 30 C 1.52994 * 109.47139 * 274.99998 * 29 3 2 31 31 H 1.08999 * 109.47430 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47344 * 300.00370 * 1 2 3 33 33 H 1.09002 * 109.47067 * 59.99841 * 1 2 3 34 34 H 1.09010 * 109.46808 * 239.99946 * 2 1 3 35 35 H 1.09002 * 109.47067 * 120.00159 * 2 1 3 36 36 H 1.07997 * 120.00069 * 172.39551 * 4 3 2 37 37 H 0.96998 * 120.00140 * 359.97438 * 7 5 4 38 38 H 1.09000 * 109.47370 * 59.99882 * 8 7 5 39 39 H 1.08998 * 109.47271 * 299.99739 * 8 7 5 40 40 H 1.08001 * 126.12583 * 359.97438 * 10 9 8 41 41 H 1.09004 * 110.89083 * 35.62837 * 17 15 14 42 42 H 1.08996 * 111.03977 * 271.83663 * 17 15 14 43 43 H 1.09003 * 110.36458 * 204.23325 * 18 17 15 44 44 H 1.08997 * 110.45972 * 81.96271 * 18 17 15 45 45 H 0.96995 * 119.99785 * 180.02562 * 23 22 20 46 46 H 1.09001 * 109.87689 * 118.35722 * 28 19 18 47 47 H 1.08993 * 109.88437 * 239.36720 * 28 19 18 48 48 H 1.09005 * 109.46743 * 34.99809 * 29 3 2 49 49 H 1.09002 * 109.46933 * 154.99757 * 29 3 2 50 50 H 1.08996 * 109.47033 * 299.99758 * 30 29 3 51 51 H 1.09002 * 109.47404 * 60.00048 * 30 29 3 52 52 H 1.08998 * 109.46990 * 179.97438 * 30 29 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.2241 2.0582 1.1513 5 6 1.7904 1.4418 2.4145 6 8 1.2064 0.3751 2.4015 7 7 2.0400 2.0592 3.5863 8 6 1.6075 1.4455 4.8443 9 6 2.0058 2.3298 5.9977 10 6 3.0811 2.1554 6.8004 11 7 3.0846 3.1553 7.7065 12 1 3.7401 3.2862 8.4094 13 7 1.9779 3.9745 7.4487 14 6 1.3289 3.4756 6.4280 15 6 0.0728 4.0416 5.8174 16 1 -0.2731 3.4158 4.9946 17 6 -1.0398 4.2027 6.8901 18 6 -1.8896 5.3507 6.2902 19 7 -0.9103 6.2575 5.6639 20 6 -1.0994 7.5920 5.4221 21 1 -0.2504 8.2318 5.2314 22 6 -2.3821 8.1225 5.4219 23 7 -3.4255 7.3216 5.4708 24 14 -2.6276 9.9730 5.3524 25 1 -2.8352 10.3921 3.9430 26 1 -3.8170 10.3452 6.1598 27 1 -1.4257 10.6527 5.8990 28 6 0.3024 5.4915 5.3414 29 6 2.3175 2.1192 -1.3046 30 6 3.7336 1.7734 -1.7693 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3634 0.5139 0.8900 33 1 -0.3633 0.5139 -0.8900 34 1 1.8933 -0.5139 -0.8901 35 1 1.8933 -0.5139 0.8900 36 1 2.6983 3.0285 1.1588 37 1 2.5060 2.9098 3.5967 38 1 2.0813 0.4700 4.9544 39 1 0.5243 1.3244 4.8359 40 1 3.8062 1.3581 6.7291 41 1 -0.6143 4.4926 7.8509 42 1 -1.6276 3.2897 6.9845 43 1 -2.4370 5.8688 7.0776 44 1 -2.5800 4.9625 5.5415 45 1 -4.3218 7.6923 5.4703 46 1 0.4743 5.5056 4.2651 47 1 1.1603 5.9202 5.8592 48 1 1.5986 1.7928 -2.0561 49 1 2.2337 3.1971 -1.1655 50 1 4.4524 2.0998 -1.0178 51 1 3.8174 0.6956 -1.9084 52 1 3.9396 2.2783 -2.7132 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001130372674.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:27:11 Heat of formation + Delta-G solvation = 43.500319 kcal Electronic energy + Delta-G solvation = -30594.126039 eV Core-core repulsion = 26594.884237 eV Total energy + Delta-G solvation = -3999.241803 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -42.34516 -40.75069 -39.02662 -37.57471 -35.80719 -34.87542 -32.88978 -32.70980 -32.00231 -30.89078 -30.57748 -29.22808 -26.99889 -26.59450 -24.97866 -24.12505 -23.41219 -22.14098 -21.76205 -21.32423 -20.07439 -19.60159 -18.79321 -18.60730 -17.86557 -16.79556 -16.72567 -16.45171 -16.03761 -15.91356 -15.80036 -15.51852 -15.17580 -14.92139 -14.69154 -14.39818 -14.21323 -13.99018 -13.83118 -13.69892 -13.59155 -13.49009 -13.38646 -13.13164 -12.89803 -12.78831 -12.72266 -12.54516 -12.35263 -12.11688 -12.02488 -11.94772 -11.80218 -11.76763 -11.65833 -11.56112 -11.28411 -10.68650 -10.50713 -10.28862 -10.10840 -9.71706 -9.51851 -8.79354 -7.89366 -5.27549 0.49698 0.96883 1.44931 1.47001 1.54421 1.57128 2.03006 2.42470 2.49613 2.68002 3.29615 3.54809 3.76143 3.82425 3.82953 3.86477 4.00100 4.15786 4.16499 4.27474 4.34533 4.38697 4.45358 4.49558 4.56092 4.65641 4.66761 4.67979 4.74295 4.81251 4.83549 4.90105 5.01584 5.02055 5.04096 5.06898 5.14248 5.16070 5.27612 5.35123 5.37606 5.39586 5.44358 5.54655 5.60022 5.60951 5.69876 5.70876 5.74411 6.21224 6.51331 6.73854 6.77879 7.07132 7.42273 7.74445 8.44735 9.23269 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.008211 B = 0.002974 C = 0.002431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3409.384517 B = 9413.454940 C =11515.390598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.098 4.098 3 C -0.021 4.021 4 C -0.243 4.243 5 C 0.538 3.462 6 O -0.568 6.568 7 N -0.715 5.715 8 C 0.210 3.790 9 C -0.272 4.272 10 C 0.107 3.893 11 N -0.465 5.465 12 H 0.454 0.546 13 N -0.323 5.323 14 C 0.105 3.895 15 C -0.009 4.009 16 H 0.092 0.908 17 C -0.117 4.117 18 C 0.182 3.818 19 N -0.620 5.620 20 C -0.249 4.249 21 H 0.073 0.927 22 C -0.059 4.059 23 N -0.944 5.944 24 Si 0.978 3.022 25 H -0.282 1.282 26 H -0.291 1.291 27 H -0.270 1.270 28 C 0.152 3.848 29 C -0.098 4.098 30 C -0.143 4.143 31 H 0.056 0.944 32 H 0.039 0.961 33 H 0.053 0.947 34 H 0.076 0.924 35 H 0.083 0.917 36 H 0.139 0.861 37 H 0.406 0.594 38 H 0.085 0.915 39 H 0.054 0.946 40 H 0.225 0.775 41 H 0.061 0.939 42 H 0.084 0.916 43 H 0.020 0.980 44 H 0.007 0.993 45 H 0.249 0.751 46 H 0.020 0.980 47 H 0.022 0.978 48 H 0.085 0.915 49 H 0.078 0.922 50 H 0.055 0.945 51 H 0.059 0.941 52 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.971 -17.013 -7.175 26.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.135 4.135 3 C -0.023 4.023 4 C -0.263 4.263 5 C 0.329 3.671 6 O -0.450 6.450 7 N -0.366 5.366 8 C 0.086 3.914 9 C -0.284 4.284 10 C -0.043 4.043 11 N -0.173 5.173 12 H 0.301 0.699 13 N -0.146 5.146 14 C -0.062 4.062 15 C -0.030 4.030 16 H 0.111 0.889 17 C -0.156 4.156 18 C 0.057 3.943 19 N -0.347 5.347 20 C -0.378 4.378 21 H 0.091 0.909 22 C -0.253 4.253 23 N -0.592 5.592 24 Si 0.805 3.195 25 H -0.209 1.209 26 H -0.218 1.218 27 H -0.194 1.194 28 C 0.026 3.974 29 C -0.135 4.135 30 C -0.200 4.200 31 H 0.075 0.925 32 H 0.058 0.942 33 H 0.072 0.928 34 H 0.094 0.906 35 H 0.101 0.899 36 H 0.157 0.843 37 H 0.241 0.759 38 H 0.104 0.896 39 H 0.072 0.928 40 H 0.241 0.759 41 H 0.079 0.921 42 H 0.103 0.897 43 H 0.039 0.961 44 H 0.025 0.975 45 H 0.059 0.941 46 H 0.038 0.962 47 H 0.040 0.960 48 H 0.104 0.896 49 H 0.097 0.903 50 H 0.075 0.925 51 H 0.078 0.922 52 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 18.467 -16.685 -6.267 25.665 hybrid contribution -0.239 1.128 -0.006 1.154 sum 18.228 -15.557 -6.273 24.771 Atomic orbital electron populations 1.21504 0.94843 1.01585 1.00783 1.20886 0.96479 0.93026 1.03115 1.22768 0.89211 0.95406 0.94928 1.22496 1.09029 1.03154 0.91664 1.18877 0.78987 0.84394 0.84867 1.90711 1.43306 1.23278 1.87743 1.46071 1.59578 1.25443 1.05482 1.19248 0.98917 0.94207 0.79037 1.19953 1.01150 1.01871 1.05383 1.23011 0.98330 0.93716 0.89278 1.46337 1.22643 1.20303 1.28024 0.69863 1.77416 0.99842 1.17736 1.19654 1.21822 0.95939 0.94566 0.93909 1.20453 0.90271 0.95089 0.97196 0.88933 1.22897 0.96512 0.98754 0.97470 1.21100 0.90561 0.88785 0.93873 1.44692 1.14147 1.05812 1.70020 1.19320 0.92335 0.83758 1.42384 0.90916 1.25777 0.95179 1.02558 1.01809 1.70146 0.97502 1.34652 1.56873 0.85087 0.77264 0.79597 0.77504 1.20912 1.21772 1.19441 1.21315 0.89563 0.90098 0.96413 1.20822 0.99087 1.00252 0.93330 1.21699 0.94479 1.02146 1.01714 0.92456 0.94223 0.92795 0.90596 0.89913 0.84279 0.75885 0.89636 0.92808 0.75894 0.92055 0.89745 0.96099 0.97471 0.94147 0.96228 0.95987 0.89641 0.90333 0.92540 0.92236 0.91002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.89 9.39 71.98 0.68 -2.22 16 2 C -0.10 -1.98 5.34 29.85 0.16 -1.82 16 3 C -0.02 -0.40 4.61 -17.62 -0.08 -0.48 16 4 C -0.24 -4.99 9.60 23.43 0.22 -4.77 16 5 C 0.54 13.30 7.64 86.57 0.66 13.96 16 6 O -0.57 -16.86 11.33 -4.06 -0.05 -16.91 16 7 N -0.72 -15.61 5.54 -470.45 -2.61 -18.22 16 8 C 0.21 4.58 5.67 85.63 0.49 5.06 16 9 C -0.27 -5.99 5.47 -20.14 -0.11 -6.10 16 10 C 0.11 1.61 11.90 83.54 0.99 2.60 16 11 N -0.47 -8.67 7.36 -57.59 -0.42 -9.10 16 12 H 0.45 5.18 8.96 -213.33 -1.91 3.27 16 13 N -0.32 -9.84 12.34 -47.39 -0.58 -10.43 16 14 C 0.10 3.16 5.77 43.10 0.25 3.41 16 15 C -0.01 -0.34 3.37 -10.27 -0.03 -0.38 16 16 H 0.09 3.30 7.27 -2.39 -0.02 3.28 16 17 C -0.12 -4.72 6.53 32.07 0.21 -4.51 16 18 C 0.18 9.48 5.36 86.86 0.47 9.94 16 19 N -0.62 -33.92 3.39 -691.98 -2.34 -36.26 16 20 C -0.25 -14.66 10.20 84.03 0.86 -13.80 16 21 H 0.07 4.15 7.85 -2.91 -0.02 4.12 16 22 C -0.06 -3.48 5.38 84.86 0.46 -3.02 16 23 N -0.94 -58.53 11.02 21.65 0.24 -58.29 16 24 Si 0.98 46.91 29.56 68.60 2.03 48.94 16 25 H -0.28 -13.19 7.11 99.48 0.71 -12.49 16 26 H -0.29 -13.93 7.11 99.48 0.71 -13.22 16 27 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 28 C 0.15 6.77 6.82 86.73 0.59 7.36 16 29 C -0.10 -1.35 6.09 29.85 0.18 -1.17 16 30 C -0.14 -1.57 9.89 71.98 0.71 -0.86 16 31 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.04 1.11 6.62 -2.39 -0.02 1.09 16 33 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 34 H 0.08 1.21 8.11 -2.38 -0.02 1.19 16 35 H 0.08 2.02 5.77 -2.39 -0.01 2.00 16 36 H 0.14 2.35 8.06 -2.91 -0.02 2.32 16 37 H 0.41 8.03 8.45 -92.71 -0.78 7.25 16 38 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 39 H 0.05 1.41 7.70 -2.39 -0.02 1.40 16 40 H 0.22 1.09 8.06 -2.91 -0.02 1.07 16 41 H 0.06 2.53 7.89 -2.38 -0.02 2.51 16 42 H 0.08 2.97 8.14 -2.39 -0.02 2.95 16 43 H 0.02 1.19 7.48 -2.39 -0.02 1.18 16 44 H 0.01 0.41 7.89 -2.39 -0.02 0.39 16 45 H 0.25 14.91 8.31 -92.71 -0.77 14.14 16 46 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 47 H 0.02 1.01 7.67 -2.39 -0.02 0.99 16 48 H 0.09 1.07 8.14 -2.38 -0.02 1.05 16 49 H 0.08 1.07 8.04 -2.39 -0.02 1.05 16 50 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 51 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 52 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 Total: -1.00 -77.87 418.28 1.19 -76.68 By element: Atomic # 1 Polarization: 22.14 SS G_CDS: -1.77 Total: 20.37 kcal Atomic # 6 Polarization: -3.49 SS G_CDS: 6.70 Total: 3.21 kcal Atomic # 7 Polarization: -126.57 SS G_CDS: -5.72 Total: -132.29 kcal Atomic # 8 Polarization: -16.86 SS G_CDS: -0.05 Total: -16.91 kcal Atomic # 14 Polarization: 46.91 SS G_CDS: 2.03 Total: 48.94 kcal Total: -77.87 1.19 -76.68 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001130372674.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.177 kcal (2) G-P(sol) polarization free energy of solvation -77.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.677 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds