Wall clock time and date at job start Wed Apr 1 2020 04:27:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50703 * 109.47129 * 2 1 4 4 C 1.32992 * 119.99996 * 95.00210 * 3 2 1 5 5 C 1.47101 * 120.00217 * 187.64936 * 4 3 2 6 6 O 1.21608 * 119.99584 * 6.18092 * 5 4 3 7 7 N 1.34773 * 119.99899 * 186.18584 * 5 4 3 8 8 C 1.46507 * 119.99709 * 179.97438 * 7 5 4 9 9 C 1.50699 * 109.47009 * 179.97438 * 8 7 5 10 10 C 1.35311 * 126.04392 * 259.68956 * 9 8 7 11 11 N 1.34945 * 107.74777 * 179.87303 * 10 9 8 12 12 H 0.97008 * 126.03975 * 180.14390 * 11 10 9 13 13 N 1.40084 * 107.92504 * 0.39394 * 11 10 9 14 14 C 1.30836 * 108.20696 * 359.75274 * 13 11 10 15 15 C 1.50692 * 125.89961 * 180.02562 * 14 13 11 16 16 H 1.09002 * 110.64050 * 183.11859 * 15 14 13 17 17 C 1.55158 * 110.72402 * 59.97535 * 15 14 13 18 18 C 1.54903 * 101.58476 * 206.13491 * 17 15 14 19 19 N 1.47423 * 104.83368 * 37.00983 * 18 17 15 20 20 C 1.36937 * 125.65399 * 155.90692 * 19 18 17 21 21 H 1.08004 * 120.00335 * 179.97438 * 20 19 18 22 22 C 1.38814 * 119.99701 * 359.97438 * 20 19 18 23 23 N 1.31618 * 120.00001 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 120.00017 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.47094 * 89.99683 * 24 22 20 26 26 H 1.48499 * 109.47065 * 209.99809 * 24 22 20 27 27 H 1.48498 * 109.47173 * 330.00125 * 24 22 20 28 28 C 1.47025 * 108.70377 * 335.87355 * 19 18 17 29 29 C 1.50698 * 120.00052 * 274.99734 * 3 2 1 30 30 C 1.52997 * 109.47210 * 88.03302 * 29 3 2 31 31 H 1.08991 * 109.46968 * 300.00235 * 1 2 3 32 32 H 1.09003 * 109.46980 * 59.99966 * 1 2 3 33 33 H 1.08995 * 109.47003 * 179.97438 * 1 2 3 34 34 H 1.09003 * 109.46980 * 120.00034 * 2 1 3 35 35 H 1.09000 * 109.47471 * 240.00070 * 2 1 3 36 36 H 1.08001 * 120.00022 * 7.64434 * 4 3 2 37 37 H 0.96997 * 120.00602 * 359.97438 * 7 5 4 38 38 H 1.08997 * 109.46848 * 300.00011 * 8 7 5 39 39 H 1.08993 * 109.46977 * 60.00067 * 8 7 5 40 40 H 1.08000 * 126.12638 * 0.02679 * 10 9 8 41 41 H 1.09004 * 111.00062 * 324.21131 * 17 15 14 42 42 H 1.08994 * 111.00370 * 88.02123 * 17 15 14 43 43 H 1.08997 * 110.36624 * 155.84608 * 18 17 15 44 44 H 1.09000 * 110.36983 * 278.17151 * 18 17 15 45 45 H 0.97000 * 120.00078 * 180.02562 * 23 22 20 46 46 H 1.09002 * 109.88339 * 241.64370 * 28 19 18 47 47 H 1.08994 * 109.88676 * 120.47465 * 28 19 18 48 48 H 1.09006 * 109.46846 * 208.03498 * 29 3 2 49 49 H 1.09000 * 109.47030 * 328.03054 * 29 3 2 50 50 H 1.09001 * 109.47235 * 179.97438 * 30 29 3 51 51 H 1.09004 * 109.46968 * 300.00207 * 30 29 3 52 52 H 1.09002 * 109.46849 * 59.99727 * 30 29 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3487 2.0143 1.1474 5 6 2.6770 3.4481 1.1678 6 8 2.5507 4.1151 0.1589 7 7 3.1178 4.0222 2.3047 8 6 3.4452 5.4501 2.3249 9 6 3.9101 5.8393 3.7045 10 6 3.1662 6.4583 4.6503 11 7 3.9438 6.6266 5.7402 12 1 3.6746 7.0415 6.5748 13 7 5.2101 6.1017 5.4517 14 6 5.1888 5.6301 4.2315 15 6 6.3424 4.9742 3.5175 16 1 6.0678 4.7241 2.4927 17 6 6.8151 3.7103 4.2832 18 6 8.2973 3.6160 3.8431 19 7 8.7567 5.0145 3.7626 20 6 10.0553 5.4355 3.8705 21 1 10.2900 6.4871 3.7969 22 6 11.0701 4.5105 4.0746 23 7 10.7840 3.2289 4.1647 24 14 12.8414 5.0848 4.2226 25 1 13.1524 5.3687 5.6466 26 1 13.7497 4.0229 3.7197 27 1 13.0304 6.3192 3.4191 28 6 7.5899 5.8824 3.5464 29 6 2.1763 2.1691 -1.3001 30 6 0.8548 2.8614 -1.6392 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3633 -1.0276 -0.0005 34 1 1.8933 -0.5139 0.8900 35 1 1.8934 -0.5138 -0.8900 36 1 2.3645 1.4436 2.0641 37 1 3.2182 3.4902 3.1095 38 1 4.2374 5.6514 1.6038 39 1 2.5600 6.0296 2.0633 40 1 2.1342 6.7609 4.5514 41 1 6.7358 3.8540 5.3608 42 1 6.2561 2.8298 3.9665 43 1 8.8789 3.0677 4.5841 44 1 8.3736 3.1349 2.8680 45 1 11.4930 2.5826 4.3077 46 1 7.6888 6.4066 2.5958 47 1 7.5063 6.6012 4.3615 48 1 2.9639 2.9166 -1.2038 49 1 2.4346 1.4697 -2.0952 50 1 0.9590 3.4030 -2.5794 51 1 0.0673 2.1139 -1.7355 52 1 0.5965 3.5608 -0.8440 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001130372675.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:27:17 Heat of formation + Delta-G solvation = 70.718568 kcal Electronic energy + Delta-G solvation = -30509.586542 eV Core-core repulsion = 26511.525011 eV Total energy + Delta-G solvation = -3998.061531 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.32790 -39.85868 -37.25916 -36.87445 -34.87806 -33.07004 -31.85942 -31.44656 -30.95222 -29.92465 -29.09772 -27.42714 -26.25796 -24.62319 -24.45431 -23.00371 -22.01110 -20.95239 -20.29815 -20.06615 -18.93818 -18.62075 -17.81374 -16.97415 -16.77337 -15.91809 -15.31086 -15.13053 -14.89688 -14.67180 -14.48198 -14.33367 -14.12666 -13.88142 -13.57885 -13.31193 -13.07074 -12.89443 -12.74167 -12.65983 -12.36081 -12.25174 -12.00669 -11.92954 -11.77575 -11.54053 -11.51240 -11.02009 -10.93370 -10.79025 -10.76249 -10.74303 -10.46741 -10.07743 -10.00950 -9.72566 -9.55850 -9.45156 -9.32537 -9.09563 -8.87781 -8.58326 -8.55880 -6.73789 -5.57640 -2.98310 1.28572 1.85882 2.64188 2.89735 3.30092 3.45225 3.49785 3.51971 3.54183 4.51701 4.54993 4.57549 4.69276 4.72659 4.87382 4.99420 5.05528 5.17032 5.21211 5.29662 5.37553 5.43558 5.45567 5.46169 5.56201 5.59930 5.60602 5.62267 5.72247 5.80833 5.84725 5.94715 5.97128 6.00476 6.09258 6.11272 6.22348 6.36269 6.44936 6.49876 6.56004 6.57407 6.64616 6.76714 6.80651 7.02445 7.28148 7.59864 7.60588 7.70882 7.80981 7.93081 8.31020 8.44227 9.30250 9.91087 10.56518 11.46526 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.010663 B = 0.002568 C = 0.002230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2625.261800 B =10901.140043 C =12554.488775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.097 4.097 3 C -0.025 4.025 4 C -0.228 4.228 5 C 0.543 3.457 6 O -0.540 6.540 7 N -0.720 5.720 8 C 0.204 3.796 9 C -0.262 4.262 10 C 0.074 3.926 11 N -0.481 5.481 12 H 0.438 0.562 13 N -0.278 5.278 14 C 0.121 3.879 15 C -0.028 4.028 16 H 0.088 0.912 17 C -0.130 4.130 18 C 0.153 3.847 19 N -0.603 5.603 20 C -0.217 4.217 21 H 0.076 0.924 22 C -0.013 4.013 23 N -0.923 5.923 24 Si 0.914 3.086 25 H -0.290 1.290 26 H -0.291 1.291 27 H -0.282 1.282 28 C 0.148 3.852 29 C -0.105 4.105 30 C -0.131 4.131 31 H 0.056 0.944 32 H 0.060 0.940 33 H 0.059 0.941 34 H 0.074 0.926 35 H 0.075 0.925 36 H 0.124 0.876 37 H 0.401 0.599 38 H 0.076 0.924 39 H 0.069 0.931 40 H 0.174 0.826 41 H 0.064 0.936 42 H 0.056 0.944 43 H 0.107 0.893 44 H 0.012 0.988 45 H 0.251 0.749 46 H 0.021 0.979 47 H 0.030 0.970 48 H 0.105 0.895 49 H 0.058 0.942 50 H 0.052 0.948 51 H 0.044 0.956 52 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.171 -2.578 -4.011 25.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.134 4.134 3 C -0.027 4.027 4 C -0.249 4.249 5 C 0.333 3.667 6 O -0.420 6.420 7 N -0.371 5.371 8 C 0.080 3.920 9 C -0.274 4.274 10 C -0.075 4.075 11 N -0.187 5.187 12 H 0.282 0.718 13 N -0.099 5.099 14 C -0.048 4.048 15 C -0.049 4.049 16 H 0.106 0.894 17 C -0.169 4.169 18 C 0.028 3.972 19 N -0.329 5.329 20 C -0.345 4.345 21 H 0.094 0.906 22 C -0.208 4.208 23 N -0.573 5.573 24 Si 0.745 3.255 25 H -0.217 1.217 26 H -0.217 1.217 27 H -0.208 1.208 28 C 0.021 3.979 29 C -0.142 4.142 30 C -0.188 4.188 31 H 0.076 0.924 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.092 0.908 35 H 0.094 0.906 36 H 0.142 0.858 37 H 0.235 0.765 38 H 0.094 0.906 39 H 0.088 0.912 40 H 0.191 0.809 41 H 0.083 0.917 42 H 0.075 0.925 43 H 0.125 0.875 44 H 0.030 0.970 45 H 0.062 0.938 46 H 0.039 0.961 47 H 0.048 0.952 48 H 0.123 0.877 49 H 0.077 0.923 50 H 0.071 0.929 51 H 0.063 0.937 52 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -24.338 -1.956 -3.638 24.686 hybrid contribution 0.255 0.183 0.370 0.485 sum -24.083 -1.774 -3.268 24.369 Atomic orbital electron populations 1.21765 0.94211 1.01917 1.02521 1.20752 0.96513 0.92893 1.03288 1.22522 0.89779 0.95146 0.95265 1.22388 1.09005 0.94374 0.99095 1.18540 0.77043 0.88129 0.82956 1.90716 1.53910 1.65000 1.32371 1.46093 1.67198 1.10778 1.13018 1.19340 0.99882 0.80615 0.92180 1.19963 0.94834 1.14017 0.98631 1.22348 0.97579 0.99820 0.87785 1.46378 1.09395 1.48876 1.14055 0.71835 1.77544 0.98089 1.17554 1.16729 1.22274 0.94804 0.96208 0.91490 1.20748 0.90215 0.96296 0.97609 0.89421 1.23064 0.99918 0.94415 0.99511 1.21928 0.88402 0.86948 0.99900 1.44469 1.01594 1.01990 1.84816 1.19080 0.81488 0.92642 1.41340 0.90565 1.24767 0.98050 0.95394 1.02621 1.69794 1.30541 0.99984 1.56935 0.86075 0.84460 0.77333 0.77674 1.21694 1.21701 1.20789 1.21280 0.85918 0.92873 0.97818 1.21011 1.00843 0.99378 0.92927 1.21584 0.95705 0.99884 1.01669 0.92445 0.92069 0.92197 0.90758 0.90616 0.85814 0.76513 0.90610 0.91246 0.80911 0.91696 0.92480 0.87539 0.96987 0.93833 0.96119 0.95186 0.87713 0.92340 0.92902 0.93694 0.91866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.91 9.89 37.16 0.37 -0.55 16 2 C -0.10 -0.69 6.11 -27.88 -0.17 -0.86 16 3 C -0.03 -0.24 4.61 -101.17 -0.47 -0.71 16 4 C -0.23 -2.27 9.63 -37.81 -0.36 -2.64 16 5 C 0.54 6.56 7.61 -12.67 -0.10 6.47 16 6 O -0.54 -7.82 11.62 5.27 0.06 -7.76 16 7 N -0.72 -7.89 5.54 -62.67 -0.35 -8.24 16 8 C 0.20 2.37 5.68 -5.19 -0.03 2.34 16 9 C -0.26 -3.22 5.47 -105.05 -0.57 -3.79 16 10 C 0.07 0.72 11.90 -17.23 -0.20 0.51 16 11 N -0.48 -5.35 7.36 30.44 0.22 -5.13 16 12 H 0.44 3.35 8.96 -182.60 -1.64 1.72 16 13 N -0.28 -4.51 12.31 33.67 0.41 -4.09 16 14 C 0.12 1.91 5.78 -82.41 -0.48 1.43 16 15 C -0.03 -0.51 3.36 -89.94 -0.30 -0.81 16 16 H 0.09 1.54 7.25 -51.93 -0.38 1.16 16 17 C -0.13 -2.55 6.52 -24.58 -0.16 -2.71 16 18 C 0.15 3.82 5.89 -2.53 -0.01 3.80 16 19 N -0.60 -16.07 3.39 -170.07 -0.58 -16.64 16 20 C -0.22 -6.26 10.27 -15.06 -0.15 -6.42 16 21 H 0.08 2.13 7.83 -52.48 -0.41 1.72 16 22 C -0.01 -0.38 5.49 -17.43 -0.10 -0.48 16 23 N -0.92 -27.45 10.09 55.49 0.56 -26.89 16 24 Si 0.91 22.63 29.55 -169.99 -5.02 17.61 16 25 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 26 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 27 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 28 C 0.15 3.30 6.83 -3.06 -0.02 3.28 16 29 C -0.10 -1.09 5.33 -27.89 -0.15 -1.24 16 30 C -0.13 -1.28 9.44 37.16 0.35 -0.93 16 31 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.06 0.39 6.11 -51.93 -0.32 0.07 16 33 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.07 0.48 7.99 -51.93 -0.41 0.07 16 35 H 0.08 0.50 8.11 -51.93 -0.42 0.08 16 36 H 0.12 0.99 7.99 -52.49 -0.42 0.57 16 37 H 0.40 3.93 8.45 -40.82 -0.34 3.59 16 38 H 0.08 1.02 7.67 -51.93 -0.40 0.62 16 39 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 40 H 0.17 0.98 8.06 -52.49 -0.42 0.56 16 41 H 0.06 1.33 7.99 -51.93 -0.41 0.92 16 42 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 43 H 0.11 2.98 5.87 -51.93 -0.31 2.68 16 44 H 0.01 0.32 8.14 -51.93 -0.42 -0.11 16 45 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 46 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 47 H 0.03 0.70 7.55 -51.93 -0.39 0.31 16 48 H 0.10 1.37 5.60 -51.93 -0.29 1.08 16 49 H 0.06 0.53 8.11 -51.93 -0.42 0.11 16 50 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 51 H 0.04 0.37 6.10 -51.93 -0.32 0.05 16 52 H 0.06 0.72 6.86 -51.93 -0.36 0.36 16 LS Contribution 412.81 15.07 6.22 6.22 Total: -1.00 -34.19 412.81 -10.78 -44.97 By element: Atomic # 1 Polarization: 13.00 SS G_CDS: -9.75 Total: 3.24 kcal Atomic # 6 Polarization: -0.74 SS G_CDS: -2.56 Total: -3.30 kcal Atomic # 7 Polarization: -61.26 SS G_CDS: 0.27 Total: -60.99 kcal Atomic # 8 Polarization: -7.82 SS G_CDS: 0.06 Total: -7.76 kcal Atomic # 14 Polarization: 22.63 SS G_CDS: -5.02 Total: 17.61 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -34.19 -10.78 -44.97 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001130372675.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.693 kcal (2) G-P(sol) polarization free energy of solvation -34.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.975 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds