Wall clock time and date at job start Wed Apr 1 2020 04:27:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50703 * 109.47129 * 2 1 4 4 C 1.32992 * 119.99996 * 95.00210 * 3 2 1 5 5 C 1.47101 * 120.00217 * 187.64936 * 4 3 2 6 6 O 1.21608 * 119.99584 * 6.18092 * 5 4 3 7 7 N 1.34773 * 119.99899 * 186.18584 * 5 4 3 8 8 C 1.46507 * 119.99709 * 179.97438 * 7 5 4 9 9 C 1.50699 * 109.47009 * 179.97438 * 8 7 5 10 10 C 1.35311 * 126.04392 * 259.68956 * 9 8 7 11 11 N 1.34945 * 107.74777 * 179.87303 * 10 9 8 12 12 H 0.97008 * 126.03975 * 180.14390 * 11 10 9 13 13 N 1.40084 * 107.92504 * 0.39394 * 11 10 9 14 14 C 1.30836 * 108.20696 * 359.75274 * 13 11 10 15 15 C 1.50692 * 125.89961 * 180.02562 * 14 13 11 16 16 H 1.09002 * 110.64050 * 183.11859 * 15 14 13 17 17 C 1.55158 * 110.72402 * 59.97535 * 15 14 13 18 18 C 1.54903 * 101.58476 * 206.13491 * 17 15 14 19 19 N 1.47423 * 104.83368 * 37.00983 * 18 17 15 20 20 C 1.36937 * 125.65399 * 155.90692 * 19 18 17 21 21 H 1.08004 * 120.00335 * 179.97438 * 20 19 18 22 22 C 1.38814 * 119.99701 * 359.97438 * 20 19 18 23 23 N 1.31618 * 120.00001 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 120.00017 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.47094 * 89.99683 * 24 22 20 26 26 H 1.48499 * 109.47065 * 209.99809 * 24 22 20 27 27 H 1.48498 * 109.47173 * 330.00125 * 24 22 20 28 28 C 1.47025 * 108.70377 * 335.87355 * 19 18 17 29 29 C 1.50698 * 120.00052 * 274.99734 * 3 2 1 30 30 C 1.52997 * 109.47210 * 88.03302 * 29 3 2 31 31 H 1.08991 * 109.46968 * 300.00235 * 1 2 3 32 32 H 1.09003 * 109.46980 * 59.99966 * 1 2 3 33 33 H 1.08995 * 109.47003 * 179.97438 * 1 2 3 34 34 H 1.09003 * 109.46980 * 120.00034 * 2 1 3 35 35 H 1.09000 * 109.47471 * 240.00070 * 2 1 3 36 36 H 1.08001 * 120.00022 * 7.64434 * 4 3 2 37 37 H 0.96997 * 120.00602 * 359.97438 * 7 5 4 38 38 H 1.08997 * 109.46848 * 300.00011 * 8 7 5 39 39 H 1.08993 * 109.46977 * 60.00067 * 8 7 5 40 40 H 1.08000 * 126.12638 * 0.02679 * 10 9 8 41 41 H 1.09004 * 111.00062 * 324.21131 * 17 15 14 42 42 H 1.08994 * 111.00370 * 88.02123 * 17 15 14 43 43 H 1.08997 * 110.36624 * 155.84608 * 18 17 15 44 44 H 1.09000 * 110.36983 * 278.17151 * 18 17 15 45 45 H 0.97000 * 120.00078 * 180.02562 * 23 22 20 46 46 H 1.09002 * 109.88339 * 241.64370 * 28 19 18 47 47 H 1.08994 * 109.88676 * 120.47465 * 28 19 18 48 48 H 1.09006 * 109.46846 * 208.03498 * 29 3 2 49 49 H 1.09000 * 109.47030 * 328.03054 * 29 3 2 50 50 H 1.09001 * 109.47235 * 179.97438 * 30 29 3 51 51 H 1.09004 * 109.46968 * 300.00207 * 30 29 3 52 52 H 1.09002 * 109.46849 * 59.99727 * 30 29 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3487 2.0143 1.1474 5 6 2.6770 3.4481 1.1678 6 8 2.5507 4.1151 0.1589 7 7 3.1178 4.0222 2.3047 8 6 3.4452 5.4501 2.3249 9 6 3.9101 5.8393 3.7045 10 6 3.1662 6.4583 4.6503 11 7 3.9438 6.6266 5.7402 12 1 3.6746 7.0415 6.5748 13 7 5.2101 6.1017 5.4517 14 6 5.1888 5.6301 4.2315 15 6 6.3424 4.9742 3.5175 16 1 6.0678 4.7241 2.4927 17 6 6.8151 3.7103 4.2832 18 6 8.2973 3.6160 3.8431 19 7 8.7567 5.0145 3.7626 20 6 10.0553 5.4355 3.8705 21 1 10.2900 6.4871 3.7969 22 6 11.0701 4.5105 4.0746 23 7 10.7840 3.2289 4.1647 24 14 12.8414 5.0848 4.2226 25 1 13.1524 5.3687 5.6466 26 1 13.7497 4.0229 3.7197 27 1 13.0304 6.3192 3.4191 28 6 7.5899 5.8824 3.5464 29 6 2.1763 2.1691 -1.3001 30 6 0.8548 2.8614 -1.6392 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3633 -1.0276 -0.0005 34 1 1.8933 -0.5139 0.8900 35 1 1.8934 -0.5138 -0.8900 36 1 2.3645 1.4436 2.0641 37 1 3.2182 3.4902 3.1095 38 1 4.2374 5.6514 1.6038 39 1 2.5600 6.0296 2.0633 40 1 2.1342 6.7609 4.5514 41 1 6.7358 3.8540 5.3608 42 1 6.2561 2.8298 3.9665 43 1 8.8789 3.0677 4.5841 44 1 8.3736 3.1349 2.8680 45 1 11.4930 2.5826 4.3077 46 1 7.6888 6.4066 2.5958 47 1 7.5063 6.6012 4.3615 48 1 2.9639 2.9166 -1.2038 49 1 2.4346 1.4697 -2.0952 50 1 0.9590 3.4030 -2.5794 51 1 0.0673 2.1139 -1.7355 52 1 0.5965 3.5608 -0.8440 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001130372675.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:27:16 Heat of formation + Delta-G solvation = 48.667194 kcal Electronic energy + Delta-G solvation = -30510.542761 eV Core-core repulsion = 26511.525011 eV Total energy + Delta-G solvation = -3999.017750 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -42.34908 -40.74528 -39.03594 -37.61471 -35.81392 -34.89875 -32.83686 -32.50496 -32.02454 -30.92723 -30.71227 -29.13465 -27.10489 -26.63581 -25.19217 -23.68807 -23.41885 -22.06669 -21.77387 -21.34087 -20.07703 -19.68273 -18.85931 -18.67693 -17.81152 -16.89617 -16.73357 -16.38421 -16.13090 -15.86187 -15.73666 -15.48167 -15.17465 -14.92091 -14.56347 -14.38042 -14.14082 -13.95902 -13.78623 -13.68719 -13.55388 -13.49738 -13.41419 -13.17626 -12.94451 -12.85704 -12.70691 -12.65063 -12.33184 -12.10756 -12.02298 -11.90915 -11.74143 -11.71034 -11.62113 -11.43640 -11.18521 -10.74625 -10.46143 -10.29172 -10.13405 -9.72201 -9.51402 -8.88150 -7.77096 -5.21492 0.51408 0.96870 1.45183 1.47972 1.54720 1.56784 2.03003 2.43598 2.49682 2.67963 3.31650 3.55199 3.76566 3.83812 3.85359 3.88137 4.02938 4.15539 4.17375 4.25751 4.34937 4.39204 4.45953 4.53246 4.56216 4.67287 4.67687 4.69250 4.76166 4.79726 4.83162 4.89561 4.96874 5.03860 5.05790 5.14226 5.15751 5.20001 5.30208 5.33145 5.38055 5.45689 5.46286 5.57105 5.61160 5.65583 5.71506 5.76866 5.80587 6.31044 6.51110 6.75620 6.78468 7.11173 7.43771 7.77647 8.42300 9.24964 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.010663 B = 0.002568 C = 0.002230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2625.261800 B =10901.140043 C =12554.488775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.095 4.095 3 C -0.023 4.023 4 C -0.239 4.239 5 C 0.536 3.464 6 O -0.570 6.570 7 N -0.713 5.713 8 C 0.211 3.789 9 C -0.271 4.271 10 C 0.106 3.894 11 N -0.466 5.466 12 H 0.454 0.546 13 N -0.325 5.325 14 C 0.104 3.896 15 C -0.009 4.009 16 H 0.094 0.906 17 C -0.110 4.110 18 C 0.156 3.844 19 N -0.624 5.624 20 C -0.241 4.241 21 H 0.076 0.924 22 C -0.067 4.067 23 N -0.948 5.948 24 Si 0.982 3.018 25 H -0.285 1.285 26 H -0.290 1.290 27 H -0.272 1.272 28 C 0.145 3.855 29 C -0.107 4.107 30 C -0.125 4.125 31 H 0.054 0.946 32 H 0.058 0.942 33 H 0.073 0.927 34 H 0.084 0.916 35 H 0.082 0.918 36 H 0.146 0.854 37 H 0.408 0.592 38 H 0.051 0.949 39 H 0.084 0.916 40 H 0.225 0.775 41 H 0.056 0.944 42 H 0.087 0.913 43 H 0.073 0.927 44 H -0.009 1.009 45 H 0.248 0.752 46 H 0.018 0.982 47 H 0.020 0.980 48 H 0.075 0.925 49 H 0.070 0.930 50 H 0.051 0.949 51 H 0.063 0.937 52 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.694 -2.647 -3.567 28.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.133 4.133 3 C -0.025 4.025 4 C -0.259 4.259 5 C 0.327 3.673 6 O -0.453 6.453 7 N -0.364 5.364 8 C 0.086 3.914 9 C -0.283 4.283 10 C -0.044 4.044 11 N -0.174 5.174 12 H 0.301 0.699 13 N -0.148 5.148 14 C -0.063 4.063 15 C -0.030 4.030 16 H 0.112 0.888 17 C -0.150 4.150 18 C 0.031 3.969 19 N -0.350 5.350 20 C -0.370 4.370 21 H 0.094 0.906 22 C -0.259 4.259 23 N -0.597 5.597 24 Si 0.810 3.190 25 H -0.212 1.212 26 H -0.216 1.216 27 H -0.197 1.197 28 C 0.020 3.980 29 C -0.144 4.144 30 C -0.182 4.182 31 H 0.073 0.927 32 H 0.077 0.923 33 H 0.092 0.908 34 H 0.102 0.898 35 H 0.101 0.899 36 H 0.163 0.837 37 H 0.243 0.757 38 H 0.070 0.930 39 H 0.102 0.898 40 H 0.241 0.759 41 H 0.074 0.926 42 H 0.106 0.894 43 H 0.091 0.909 44 H 0.009 0.991 45 H 0.058 0.942 46 H 0.036 0.964 47 H 0.038 0.962 48 H 0.094 0.906 49 H 0.088 0.912 50 H 0.070 0.930 51 H 0.082 0.918 52 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -26.878 -2.012 -3.164 27.138 hybrid contribution 0.987 0.263 0.230 1.047 sum -25.891 -1.749 -2.934 26.115 Atomic orbital electron populations 1.21756 0.93365 1.02786 1.02288 1.20804 0.97108 0.91199 1.04142 1.22738 0.88950 0.96265 0.94526 1.22503 1.09768 0.93395 1.00282 1.18946 0.76662 0.88983 0.82671 1.90712 1.55282 1.65866 1.33401 1.46040 1.66626 1.10654 1.13071 1.19213 0.99624 0.81174 0.91342 1.19948 0.93743 1.15231 0.99402 1.23012 0.98872 0.96699 0.85802 1.46345 1.07991 1.47804 1.15218 0.69901 1.77436 1.01075 1.19079 1.17212 1.21864 0.95136 0.97382 0.91906 1.20446 0.89650 0.94696 0.98210 0.88803 1.22825 0.96502 0.96597 0.99033 1.21721 0.91457 0.85943 0.97811 1.44778 1.02126 1.03289 1.84850 1.19432 0.83025 0.92906 1.41593 0.90600 1.25640 1.02146 0.95586 1.02538 1.70047 1.31411 1.00857 1.57426 0.85028 0.79205 0.77088 0.77697 1.21175 1.21639 1.19687 1.21374 0.86583 0.93107 0.96982 1.20969 1.00216 0.99089 0.94149 1.21518 0.95938 0.99909 1.00855 0.92655 0.92325 0.90786 0.89780 0.89921 0.83671 0.75674 0.93033 0.89815 0.75896 0.92570 0.89406 0.90855 0.99087 0.94234 0.96400 0.96178 0.90642 0.91175 0.93026 0.91849 0.93667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.45 9.89 71.98 0.71 -0.74 16 2 C -0.10 -1.14 6.11 29.85 0.18 -0.96 16 3 C -0.02 -0.40 4.61 -17.62 -0.08 -0.48 16 4 C -0.24 -4.45 9.63 23.43 0.23 -4.22 16 5 C 0.54 12.59 7.61 86.57 0.66 13.25 16 6 O -0.57 -16.67 11.62 -4.05 -0.05 -16.71 16 7 N -0.71 -14.60 5.54 -470.46 -2.61 -17.21 16 8 C 0.21 4.58 5.68 85.63 0.49 5.06 16 9 C -0.27 -6.04 5.47 -20.14 -0.11 -6.15 16 10 C 0.11 1.64 11.90 83.54 0.99 2.63 16 11 N -0.47 -8.98 7.36 -57.60 -0.42 -9.40 16 12 H 0.45 5.49 8.96 -213.32 -1.91 3.57 16 13 N -0.32 -10.17 12.31 -47.39 -0.58 -10.75 16 14 C 0.10 3.19 5.78 43.10 0.25 3.44 16 15 C -0.01 -0.34 3.36 -10.35 -0.03 -0.38 16 16 H 0.09 3.31 7.25 -2.39 -0.02 3.29 16 17 C -0.11 -4.37 6.52 31.98 0.21 -4.16 16 18 C 0.16 8.07 5.89 86.85 0.51 8.58 16 19 N -0.62 -34.53 3.39 -691.99 -2.35 -36.88 16 20 C -0.24 -14.31 10.27 84.03 0.86 -13.45 16 21 H 0.08 4.37 7.83 -2.91 -0.02 4.35 16 22 C -0.07 -3.94 5.49 84.86 0.47 -3.47 16 23 N -0.95 -58.17 10.09 21.65 0.22 -57.95 16 24 Si 0.98 47.35 29.55 68.60 2.03 49.38 16 25 H -0.28 -13.45 7.11 99.48 0.71 -12.75 16 26 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 27 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 28 C 0.15 6.70 6.83 86.73 0.59 7.29 16 29 C -0.11 -2.19 5.33 29.85 0.16 -2.03 16 30 C -0.13 -2.38 9.44 71.98 0.68 -1.70 16 31 H 0.05 0.58 8.14 -2.39 -0.02 0.57 16 32 H 0.06 0.61 6.11 -2.39 -0.01 0.60 16 33 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 34 H 0.08 0.87 7.99 -2.39 -0.02 0.85 16 35 H 0.08 0.89 8.11 -2.39 -0.02 0.87 16 36 H 0.15 1.99 7.99 -2.91 -0.02 1.97 16 37 H 0.41 7.16 8.45 -92.71 -0.78 6.38 16 38 H 0.05 1.38 7.67 -2.39 -0.02 1.36 16 39 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 40 H 0.22 1.16 8.06 -2.91 -0.02 1.14 16 41 H 0.06 2.33 7.99 -2.38 -0.02 2.31 16 42 H 0.09 2.91 8.14 -2.39 -0.02 2.89 16 43 H 0.07 4.30 5.87 -2.39 -0.01 4.29 16 44 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 45 H 0.25 14.67 8.31 -92.71 -0.77 13.90 16 46 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 47 H 0.02 0.96 7.55 -2.39 -0.02 0.95 16 48 H 0.08 2.03 5.60 -2.38 -0.01 2.02 16 49 H 0.07 1.23 8.11 -2.39 -0.02 1.21 16 50 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 51 H 0.06 0.94 6.10 -2.38 -0.01 0.93 16 52 H 0.04 1.02 6.86 -2.39 -0.02 1.01 16 Total: -1.00 -78.20 412.81 1.24 -76.96 By element: Atomic # 1 Polarization: 21.80 SS G_CDS: -1.75 Total: 20.05 kcal Atomic # 6 Polarization: -4.25 SS G_CDS: 6.76 Total: 2.51 kcal Atomic # 7 Polarization: -126.44 SS G_CDS: -5.75 Total: -132.19 kcal Atomic # 8 Polarization: -16.67 SS G_CDS: -0.05 Total: -16.71 kcal Atomic # 14 Polarization: 47.35 SS G_CDS: 2.03 Total: 49.38 kcal Total: -78.20 1.24 -76.96 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001130372675.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.629 kcal (2) G-P(sol) polarization free energy of solvation -78.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.961 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds