Wall clock time and date at job start Wed Apr 1 2020 04:27:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50700 * 119.99954 * 2 1 4 4 C 1.52997 * 109.46913 * 0.02562 * 3 2 1 5 5 C 1.52989 * 109.47431 * 240.00607 * 3 2 1 6 6 C 1.53005 * 109.46941 * 120.00300 * 3 2 1 7 7 C 1.50692 * 109.47272 * 180.02562 * 6 3 2 8 8 O 1.21289 * 119.99890 * 359.97438 * 7 6 3 9 9 N 1.34774 * 120.00261 * 180.02562 * 7 6 3 10 10 C 1.46500 * 120.00082 * 179.97438 * 9 7 6 11 11 C 1.50705 * 109.47169 * 179.97438 * 10 9 7 12 12 C 1.35313 * 126.04209 * 260.14446 * 11 10 9 13 13 N 1.34953 * 107.74485 * 180.27076 * 12 11 10 14 14 H 0.97000 * 126.03486 * 179.74758 * 13 12 11 15 15 N 1.40085 * 107.92392 * 359.75378 * 13 12 11 16 16 C 1.30834 * 108.20595 * 359.97438 * 15 13 12 17 17 C 1.50705 * 125.89692 * 179.97438 * 16 15 13 18 18 H 1.09008 * 110.77748 * 178.23622 * 17 16 15 19 19 C 1.55153 * 110.72354 * 54.99718 * 17 16 15 20 20 C 1.55131 * 101.48647 * 205.96741 * 19 17 16 21 21 N 1.47426 * 104.71847 * 37.29562 * 20 19 17 22 22 C 1.36945 * 125.64675 * 155.81671 * 21 20 19 23 23 H 1.07997 * 119.99756 * 179.68946 * 22 21 20 24 24 C 1.38805 * 119.99878 * 359.68852 * 22 21 20 25 25 N 1.31624 * 120.00257 * 0.02562 * 24 22 21 26 26 Si 1.86803 * 119.99929 * 179.97438 * 24 22 21 27 27 H 1.48498 * 109.47174 * 270.00277 * 26 24 22 28 28 H 1.48501 * 109.47062 * 30.00228 * 26 24 22 29 29 H 1.48499 * 109.46981 * 150.00382 * 26 24 22 30 30 C 1.47026 * 108.70569 * 335.55014 * 21 20 19 31 31 H 1.07998 * 120.00480 * 359.97438 * 1 2 3 32 32 H 1.08003 * 119.99708 * 180.02562 * 1 2 3 33 33 H 1.07999 * 119.99961 * 180.02562 * 2 1 3 34 34 H 1.08998 * 109.47008 * 179.97438 * 4 3 2 35 35 H 1.08999 * 109.47306 * 299.99660 * 4 3 2 36 36 H 1.08997 * 109.47510 * 59.99443 * 4 3 2 37 37 H 1.09005 * 109.47305 * 300.00157 * 5 3 2 38 38 H 1.08996 * 109.47160 * 59.99757 * 5 3 2 39 39 H 1.08998 * 109.47267 * 179.97438 * 5 3 2 40 40 H 1.09004 * 109.46573 * 59.99963 * 6 3 2 41 41 H 1.08997 * 109.47029 * 300.00280 * 6 3 2 42 42 H 0.97004 * 120.00036 * 0.02562 * 9 7 6 43 43 H 1.09005 * 109.46828 * 60.00564 * 10 9 7 44 44 H 1.08997 * 109.47512 * 300.00008 * 10 9 7 45 45 H 1.08001 * 126.12703 * 0.03190 * 12 11 10 46 46 H 1.08999 * 111.00098 * 324.21115 * 19 17 16 47 47 H 1.08999 * 111.00620 * 88.02293 * 19 17 16 48 48 H 1.08994 * 110.50226 * 278.45550 * 20 19 17 49 49 H 1.09001 * 110.34274 * 156.05220 * 20 19 17 50 50 H 0.97001 * 119.99885 * 179.97438 * 25 24 22 51 51 H 1.09003 * 109.87851 * 120.70448 * 30 21 20 52 52 H 1.08997 * 109.87950 * 241.87026 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 1.0692 2.4680 0.0006 5 6 2.9430 1.3863 -1.2492 6 6 2.9432 1.3861 1.2493 7 6 3.6962 2.6914 1.2496 8 8 3.5446 3.4792 0.3400 9 7 4.5389 2.9830 2.2602 10 6 5.2713 4.2517 2.2603 11 6 6.1377 4.3315 3.4908 12 6 5.8482 5.0090 4.6258 13 7 6.8768 4.8358 5.4820 14 1 6.9458 5.2099 6.3743 15 7 7.8275 4.0205 4.8544 16 6 7.3818 3.7157 3.6627 17 6 8.0899 2.8559 2.6476 18 1 7.4827 2.7376 1.7501 19 6 8.4487 1.4735 3.2537 20 6 9.6730 1.0667 2.3922 21 7 10.4094 2.3245 2.1704 22 6 11.7451 2.4278 1.8867 23 1 12.1914 3.3996 1.7357 24 6 12.5253 1.2836 1.7931 25 7 11.9812 0.0992 1.9767 26 14 14.3472 1.4245 1.4053 27 1 14.5451 1.3796 -0.0657 28 1 14.8682 2.7100 1.9358 29 1 15.0766 0.2961 2.0376 30 6 9.4710 3.4491 2.2980 31 1 -0.5401 0.9352 0.0004 32 1 -0.5400 -0.9354 0.0004 33 1 1.8500 -0.9353 -0.0004 34 1 1.6142 3.4119 0.0011 35 1 0.4422 2.4105 -0.8891 36 1 0.4428 2.4100 0.8908 37 1 3.6513 0.5578 -1.2494 38 1 2.3163 1.3286 -2.1391 39 1 3.4876 2.3305 -1.2494 40 1 3.6515 0.5575 1.2491 41 1 2.3166 1.3283 2.1392 42 1 4.6610 2.3524 2.9872 43 1 4.5629 5.0802 2.2608 44 1 5.8977 4.3097 1.3701 45 1 4.9556 5.5880 4.8116 46 1 8.7202 1.5666 4.3053 47 1 7.6296 0.7660 3.1251 48 1 9.3474 0.6451 1.4413 49 1 10.2955 0.3528 2.9316 50 1 12.5264 -0.7004 1.9109 51 1 9.7996 4.1175 3.0939 52 1 9.4133 3.9925 1.3549 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001130392280.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:27:23 Heat of formation + Delta-G solvation = 80.327410 kcal Electronic energy + Delta-G solvation = -30727.625113 eV Core-core repulsion = 26729.980253 eV Total energy + Delta-G solvation = -3997.644860 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.36092 -40.19107 -37.38869 -37.26158 -34.97105 -33.08958 -31.66793 -31.25345 -30.73679 -29.10445 -28.30674 -27.43814 -27.35701 -25.43439 -24.63201 -22.62169 -22.02275 -20.50938 -20.21174 -20.04427 -18.70408 -18.41254 -17.96444 -17.02850 -16.79043 -15.92839 -15.65535 -15.49530 -14.98885 -14.60823 -14.51141 -14.44342 -14.16304 -14.01428 -13.73270 -13.44838 -12.98529 -12.80858 -12.69855 -12.42308 -12.14493 -12.05532 -11.84059 -11.79227 -11.52864 -11.38181 -11.24676 -11.05603 -11.03507 -10.80564 -10.77672 -10.74843 -10.50630 -10.09086 -10.02726 -9.74311 -9.64522 -9.57745 -9.45187 -9.13224 -9.02989 -8.60800 -8.58253 -6.75557 -5.58941 -2.99952 1.82689 2.07325 2.60592 2.61937 2.87103 3.44150 3.44345 3.49129 3.51114 4.50580 4.53637 4.61089 4.66131 4.70086 4.75778 4.96858 5.09638 5.12534 5.21591 5.27484 5.38155 5.41829 5.48993 5.54956 5.57673 5.60838 5.71105 5.71258 5.78373 5.86921 5.93880 5.94878 5.97605 6.02196 6.07498 6.26524 6.33114 6.40344 6.43018 6.53805 6.57990 6.61702 6.62038 6.74133 6.78228 6.99780 7.25601 7.49533 7.57984 7.69365 7.78380 7.91673 8.22801 8.43016 9.28798 9.89602 10.54747 11.44991 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.010706 B = 0.002621 C = 0.002238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2614.609700 B =10679.830959 C =12505.725082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.143 4.143 3 C -0.019 4.019 4 C -0.155 4.155 5 C -0.151 4.151 6 C -0.131 4.131 7 C 0.514 3.486 8 O -0.535 6.535 9 N -0.724 5.724 10 C 0.202 3.798 11 C -0.263 4.263 12 C 0.074 3.926 13 N -0.481 5.481 14 H 0.438 0.562 15 N -0.277 5.277 16 C 0.120 3.880 17 C -0.028 4.028 18 H 0.088 0.912 19 C -0.130 4.130 20 C 0.152 3.848 21 N -0.603 5.603 22 C -0.217 4.217 23 H 0.076 0.924 24 C -0.013 4.013 25 N -0.923 5.923 26 Si 0.914 3.086 27 H -0.289 1.289 28 H -0.282 1.282 29 H -0.291 1.291 30 C 0.149 3.851 31 H 0.103 0.897 32 H 0.093 0.907 33 H 0.108 0.892 34 H 0.087 0.913 35 H 0.052 0.948 36 H 0.047 0.953 37 H 0.049 0.951 38 H 0.050 0.950 39 H 0.088 0.912 40 H 0.096 0.904 41 H 0.091 0.909 42 H 0.401 0.599 43 H 0.070 0.930 44 H 0.076 0.924 45 H 0.174 0.826 46 H 0.066 0.934 47 H 0.056 0.944 48 H 0.012 0.988 49 H 0.108 0.892 50 H 0.251 0.749 51 H 0.029 0.971 52 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.084 4.683 3.589 24.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.161 4.161 3 C -0.020 4.020 4 C -0.211 4.211 5 C -0.208 4.208 6 C -0.171 4.171 7 C 0.301 3.699 8 O -0.413 6.413 9 N -0.376 5.376 10 C 0.079 3.921 11 C -0.275 4.275 12 C -0.075 4.075 13 N -0.187 5.187 14 H 0.282 0.718 15 N -0.099 5.099 16 C -0.048 4.048 17 C -0.049 4.049 18 H 0.106 0.894 19 C -0.170 4.170 20 C 0.028 3.972 21 N -0.329 5.329 22 C -0.346 4.346 23 H 0.094 0.906 24 C -0.208 4.208 25 N -0.572 5.572 26 Si 0.745 3.255 27 H -0.217 1.217 28 H -0.208 1.208 29 H -0.217 1.217 30 C 0.022 3.978 31 H 0.121 0.879 32 H 0.112 0.888 33 H 0.126 0.874 34 H 0.105 0.895 35 H 0.071 0.929 36 H 0.066 0.934 37 H 0.069 0.931 38 H 0.069 0.931 39 H 0.107 0.893 40 H 0.114 0.886 41 H 0.109 0.891 42 H 0.235 0.765 43 H 0.088 0.912 44 H 0.095 0.905 45 H 0.191 0.809 46 H 0.085 0.915 47 H 0.075 0.925 48 H 0.030 0.970 49 H 0.125 0.875 50 H 0.062 0.938 51 H 0.047 0.953 52 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges -23.036 5.016 3.755 23.873 hybrid contribution 0.255 0.019 0.158 0.300 sum -22.781 5.035 3.913 23.657 Atomic orbital electron populations 1.23994 0.96185 1.01951 1.01542 1.22991 0.95930 0.97772 0.99379 1.19364 0.94882 0.93117 0.94603 1.22175 0.98497 0.99775 1.00701 1.22064 0.99234 1.03879 0.95600 1.21721 0.99346 0.96043 0.99946 1.20607 0.79285 0.88465 0.81523 1.90579 1.64758 1.50717 1.35254 1.46252 1.44522 1.21355 1.25423 1.19367 0.92606 0.85544 0.94629 1.19962 0.99063 1.10388 0.98080 1.22355 0.93943 1.00504 0.90718 1.46382 1.14998 1.41281 1.16017 0.71818 1.77542 1.12055 1.11426 1.08855 1.22273 0.92883 0.96449 0.93177 1.20747 0.95897 0.94312 0.93935 0.89424 1.23107 0.99707 0.93504 1.00665 1.21990 0.89429 0.90116 0.95715 1.44477 1.04596 1.00593 1.83204 1.19078 0.82598 0.93096 1.39814 0.90567 1.24765 0.98320 0.95232 1.02487 1.69789 1.33895 0.96811 1.56745 0.86075 0.84703 0.76907 0.77849 1.21680 1.20766 1.21707 1.21268 0.87409 0.91617 0.97530 0.87904 0.88828 0.87423 0.89473 0.92912 0.93421 0.93145 0.93110 0.89317 0.88595 0.89074 0.76501 0.91202 0.90531 0.80906 0.91545 0.92543 0.96990 0.87467 0.93820 0.95329 0.96095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.51 13.70 29.01 0.40 -1.12 16 2 C -0.14 -1.18 8.76 -36.03 -0.32 -1.49 16 3 C -0.02 -0.18 0.74 -155.66 -0.11 -0.29 16 4 C -0.15 -1.45 6.83 37.16 0.25 -1.19 16 5 C -0.15 -1.60 8.16 37.15 0.30 -1.29 16 6 C -0.13 -1.11 4.75 -27.88 -0.13 -1.24 16 7 C 0.51 5.52 7.24 -10.99 -0.08 5.44 16 8 O -0.54 -7.23 11.35 5.55 0.06 -7.17 16 9 N -0.72 -7.15 5.55 -61.47 -0.34 -7.49 16 10 C 0.20 2.22 5.65 -5.19 -0.03 2.19 16 11 C -0.26 -3.09 5.47 -105.05 -0.57 -3.67 16 12 C 0.07 0.69 11.90 -17.22 -0.20 0.49 16 13 N -0.48 -5.19 7.36 30.45 0.22 -4.96 16 14 H 0.44 3.23 8.96 -182.61 -1.64 1.59 16 15 N -0.28 -4.40 12.33 33.67 0.42 -3.98 16 16 C 0.12 1.85 5.76 -82.40 -0.47 1.38 16 17 C -0.03 -0.50 3.36 -89.94 -0.30 -0.80 16 18 H 0.09 1.48 7.32 -51.92 -0.38 1.10 16 19 C -0.13 -2.52 6.53 -24.46 -0.16 -2.68 16 20 C 0.15 3.75 5.91 -2.41 -0.01 3.73 16 21 N -0.60 -15.90 3.39 -169.93 -0.58 -16.47 16 22 C -0.22 -6.22 10.27 -15.06 -0.15 -6.38 16 23 H 0.08 2.12 7.83 -52.49 -0.41 1.71 16 24 C -0.01 -0.37 5.49 -17.43 -0.10 -0.47 16 25 N -0.92 -27.25 10.08 55.49 0.56 -26.70 16 26 Si 0.91 22.50 29.55 -169.99 -5.02 17.48 16 27 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 28 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 29 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 30 C 0.15 3.27 6.83 -3.06 -0.02 3.25 16 31 H 0.10 0.75 5.69 -52.49 -0.30 0.46 16 32 H 0.09 0.61 8.06 -52.48 -0.42 0.18 16 33 H 0.11 0.82 8.06 -52.49 -0.42 0.40 16 34 H 0.09 0.99 5.51 -51.93 -0.29 0.70 16 35 H 0.05 0.47 7.50 -51.93 -0.39 0.08 16 36 H 0.05 0.40 7.50 -51.93 -0.39 0.01 16 37 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.09 1.12 5.51 -51.93 -0.29 0.84 16 40 H 0.10 0.75 8.14 -51.93 -0.42 0.32 16 41 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.40 3.47 8.46 -40.82 -0.35 3.12 16 43 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.08 0.98 7.77 -51.93 -0.40 0.58 16 45 H 0.17 0.91 8.06 -52.49 -0.42 0.49 16 46 H 0.07 1.35 7.88 -51.93 -0.41 0.94 16 47 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 48 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 49 H 0.11 2.97 5.86 -51.93 -0.30 2.67 16 50 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 51 H 0.03 0.66 7.68 -51.93 -0.40 0.26 16 52 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 LS Contribution 409.34 15.07 6.17 6.17 Total: -1.00 -33.81 409.34 -9.95 -43.77 By element: Atomic # 1 Polarization: 13.23 SS G_CDS: -9.72 Total: 3.51 kcal Atomic # 6 Polarization: -2.43 SS G_CDS: -1.72 Total: -4.15 kcal Atomic # 7 Polarization: -59.89 SS G_CDS: 0.28 Total: -59.61 kcal Atomic # 8 Polarization: -7.23 SS G_CDS: 0.06 Total: -7.17 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -5.02 Total: 17.48 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -33.81 -9.95 -43.77 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001130392280.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.093 kcal (2) G-P(sol) polarization free energy of solvation -33.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.765 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds