Wall clock time and date at job start Wed Apr 1 2020 04:27:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50700 * 119.99954 * 2 1 4 4 C 1.52997 * 109.46913 * 0.02562 * 3 2 1 5 5 C 1.52989 * 109.47431 * 240.00607 * 3 2 1 6 6 C 1.53005 * 109.46941 * 120.00300 * 3 2 1 7 7 C 1.50692 * 109.47272 * 180.02562 * 6 3 2 8 8 O 1.21289 * 119.99890 * 359.97438 * 7 6 3 9 9 N 1.34774 * 120.00261 * 180.02562 * 7 6 3 10 10 C 1.46500 * 120.00082 * 179.97438 * 9 7 6 11 11 C 1.50705 * 109.47169 * 179.97438 * 10 9 7 12 12 C 1.35313 * 126.04209 * 260.14446 * 11 10 9 13 13 N 1.34953 * 107.74485 * 180.27076 * 12 11 10 14 14 H 0.97000 * 126.03486 * 179.74758 * 13 12 11 15 15 N 1.40085 * 107.92392 * 359.75378 * 13 12 11 16 16 C 1.30834 * 108.20595 * 359.97438 * 15 13 12 17 17 C 1.50705 * 125.89692 * 179.97438 * 16 15 13 18 18 H 1.09008 * 110.77748 * 178.23622 * 17 16 15 19 19 C 1.55153 * 110.72354 * 54.99718 * 17 16 15 20 20 C 1.55131 * 101.48647 * 205.96741 * 19 17 16 21 21 N 1.47426 * 104.71847 * 37.29562 * 20 19 17 22 22 C 1.36945 * 125.64675 * 155.81671 * 21 20 19 23 23 H 1.07997 * 119.99756 * 179.68946 * 22 21 20 24 24 C 1.38805 * 119.99878 * 359.68852 * 22 21 20 25 25 N 1.31624 * 120.00257 * 0.02562 * 24 22 21 26 26 Si 1.86803 * 119.99929 * 179.97438 * 24 22 21 27 27 H 1.48498 * 109.47174 * 270.00277 * 26 24 22 28 28 H 1.48501 * 109.47062 * 30.00228 * 26 24 22 29 29 H 1.48499 * 109.46981 * 150.00382 * 26 24 22 30 30 C 1.47026 * 108.70569 * 335.55014 * 21 20 19 31 31 H 1.07998 * 120.00480 * 359.97438 * 1 2 3 32 32 H 1.08003 * 119.99708 * 180.02562 * 1 2 3 33 33 H 1.07999 * 119.99961 * 180.02562 * 2 1 3 34 34 H 1.08998 * 109.47008 * 179.97438 * 4 3 2 35 35 H 1.08999 * 109.47306 * 299.99660 * 4 3 2 36 36 H 1.08997 * 109.47510 * 59.99443 * 4 3 2 37 37 H 1.09005 * 109.47305 * 300.00157 * 5 3 2 38 38 H 1.08996 * 109.47160 * 59.99757 * 5 3 2 39 39 H 1.08998 * 109.47267 * 179.97438 * 5 3 2 40 40 H 1.09004 * 109.46573 * 59.99963 * 6 3 2 41 41 H 1.08997 * 109.47029 * 300.00280 * 6 3 2 42 42 H 0.97004 * 120.00036 * 0.02562 * 9 7 6 43 43 H 1.09005 * 109.46828 * 60.00564 * 10 9 7 44 44 H 1.08997 * 109.47512 * 300.00008 * 10 9 7 45 45 H 1.08001 * 126.12703 * 0.03190 * 12 11 10 46 46 H 1.08999 * 111.00098 * 324.21115 * 19 17 16 47 47 H 1.08999 * 111.00620 * 88.02293 * 19 17 16 48 48 H 1.08994 * 110.50226 * 278.45550 * 20 19 17 49 49 H 1.09001 * 110.34274 * 156.05220 * 20 19 17 50 50 H 0.97001 * 119.99885 * 179.97438 * 25 24 22 51 51 H 1.09003 * 109.87851 * 120.70448 * 30 21 20 52 52 H 1.08997 * 109.87950 * 241.87026 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 1.0692 2.4680 0.0006 5 6 2.9430 1.3863 -1.2492 6 6 2.9432 1.3861 1.2493 7 6 3.6962 2.6914 1.2496 8 8 3.5446 3.4792 0.3400 9 7 4.5389 2.9830 2.2602 10 6 5.2713 4.2517 2.2603 11 6 6.1377 4.3315 3.4908 12 6 5.8482 5.0090 4.6258 13 7 6.8768 4.8358 5.4820 14 1 6.9458 5.2099 6.3743 15 7 7.8275 4.0205 4.8544 16 6 7.3818 3.7157 3.6627 17 6 8.0899 2.8559 2.6476 18 1 7.4827 2.7376 1.7501 19 6 8.4487 1.4735 3.2537 20 6 9.6730 1.0667 2.3922 21 7 10.4094 2.3245 2.1704 22 6 11.7451 2.4278 1.8867 23 1 12.1914 3.3996 1.7357 24 6 12.5253 1.2836 1.7931 25 7 11.9812 0.0992 1.9767 26 14 14.3472 1.4245 1.4053 27 1 14.5451 1.3796 -0.0657 28 1 14.8682 2.7100 1.9358 29 1 15.0766 0.2961 2.0376 30 6 9.4710 3.4491 2.2980 31 1 -0.5401 0.9352 0.0004 32 1 -0.5400 -0.9354 0.0004 33 1 1.8500 -0.9353 -0.0004 34 1 1.6142 3.4119 0.0011 35 1 0.4422 2.4105 -0.8891 36 1 0.4428 2.4100 0.8908 37 1 3.6513 0.5578 -1.2494 38 1 2.3163 1.3286 -2.1391 39 1 3.4876 2.3305 -1.2494 40 1 3.6515 0.5575 1.2491 41 1 2.3166 1.3283 2.1392 42 1 4.6610 2.3524 2.9872 43 1 4.5629 5.0802 2.2608 44 1 5.8977 4.3097 1.3701 45 1 4.9556 5.5880 4.8116 46 1 8.7202 1.5666 4.3053 47 1 7.6296 0.7660 3.1251 48 1 9.3474 0.6451 1.4413 49 1 10.2955 0.3528 2.9316 50 1 12.5264 -0.7004 1.9109 51 1 9.7996 4.1175 3.0939 52 1 9.4133 3.9925 1.3549 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001130392280.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:27:21 Heat of formation + Delta-G solvation = 58.288068 kcal Electronic energy + Delta-G solvation = -30728.580811 eV Core-core repulsion = 26729.980253 eV Total energy + Delta-G solvation = -3998.600558 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -42.33859 -40.99703 -39.02014 -38.10855 -35.85147 -34.89250 -32.81591 -32.27141 -31.63713 -30.89690 -29.19522 -28.99360 -28.11703 -26.64683 -26.24272 -23.43970 -23.26998 -22.05594 -21.39149 -21.07750 -20.03426 -19.13385 -18.85120 -18.77298 -17.80028 -16.89522 -16.72467 -16.48431 -16.25616 -16.20416 -15.74266 -15.44044 -15.26208 -14.95762 -14.77396 -14.45616 -14.27859 -14.02668 -13.74159 -13.57555 -13.49284 -13.39818 -13.23575 -12.94093 -12.88842 -12.72088 -12.59076 -12.31373 -12.16167 -12.01536 -11.94410 -11.89353 -11.77162 -11.71876 -11.62071 -11.45584 -11.16565 -10.74421 -10.48753 -10.28539 -10.19358 -9.86408 -9.50109 -8.87648 -7.76639 -5.21169 0.98144 1.44970 1.46071 1.48056 1.56564 1.58463 1.81742 2.04116 2.49801 2.64342 3.31918 3.56373 3.77816 3.80671 3.85248 3.93550 4.04098 4.07530 4.16994 4.17994 4.30294 4.37966 4.47582 4.53711 4.58123 4.69344 4.70217 4.74046 4.82183 4.82860 4.90016 4.90889 5.03036 5.05415 5.07409 5.14155 5.16932 5.18056 5.27461 5.33787 5.46224 5.47770 5.54913 5.59123 5.67287 5.74210 5.81634 5.85493 6.00728 6.32100 6.52217 6.73528 6.79204 7.11723 7.44833 7.78286 8.42577 9.25048 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.010706 B = 0.002621 C = 0.002238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2614.609700 B =10679.830959 C =12505.725082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.152 4.152 3 C -0.019 4.019 4 C -0.149 4.149 5 C -0.149 4.149 6 C -0.127 4.127 7 C 0.511 3.489 8 O -0.566 6.566 9 N -0.717 5.717 10 C 0.209 3.791 11 C -0.271 4.271 12 C 0.106 3.894 13 N -0.466 5.466 14 H 0.454 0.546 15 N -0.326 5.326 16 C 0.104 3.896 17 C -0.009 4.009 18 H 0.096 0.904 19 C -0.111 4.111 20 C 0.154 3.846 21 N -0.625 5.625 22 C -0.240 4.240 23 H 0.076 0.924 24 C -0.066 4.066 25 N -0.947 5.947 26 Si 0.981 3.019 27 H -0.285 1.285 28 H -0.272 1.272 29 H -0.290 1.290 30 C 0.146 3.854 31 H 0.104 0.896 32 H 0.106 0.894 33 H 0.114 0.886 34 H 0.066 0.934 35 H 0.052 0.948 36 H 0.059 0.941 37 H 0.049 0.951 38 H 0.049 0.951 39 H 0.065 0.935 40 H 0.105 0.895 41 H 0.113 0.887 42 H 0.409 0.591 43 H 0.084 0.916 44 H 0.051 0.949 45 H 0.225 0.775 46 H 0.056 0.944 47 H 0.089 0.911 48 H -0.008 1.008 49 H 0.073 0.927 50 H 0.248 0.752 51 H 0.017 0.983 52 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.363 5.359 4.926 27.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.170 4.170 3 C -0.020 4.020 4 C -0.206 4.206 5 C -0.206 4.206 6 C -0.166 4.166 7 C 0.299 3.701 8 O -0.447 6.447 9 N -0.368 5.368 10 C 0.085 3.915 11 C -0.283 4.283 12 C -0.044 4.044 13 N -0.174 5.174 14 H 0.301 0.699 15 N -0.149 5.149 16 C -0.063 4.063 17 C -0.030 4.030 18 H 0.114 0.886 19 C -0.151 4.151 20 C 0.030 3.970 21 N -0.351 5.351 22 C -0.369 4.369 23 H 0.094 0.906 24 C -0.259 4.259 25 N -0.597 5.597 26 Si 0.809 3.191 27 H -0.212 1.212 28 H -0.197 1.197 29 H -0.216 1.216 30 C 0.020 3.980 31 H 0.122 0.878 32 H 0.124 0.876 33 H 0.132 0.868 34 H 0.085 0.915 35 H 0.071 0.929 36 H 0.078 0.922 37 H 0.068 0.932 38 H 0.068 0.932 39 H 0.084 0.916 40 H 0.123 0.877 41 H 0.132 0.868 42 H 0.245 0.755 43 H 0.102 0.898 44 H 0.070 0.930 45 H 0.241 0.759 46 H 0.074 0.926 47 H 0.107 0.893 48 H 0.010 0.990 49 H 0.091 0.909 50 H 0.058 0.942 51 H 0.035 0.965 52 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges -25.323 5.702 5.122 26.457 hybrid contribution 0.919 -0.116 -0.237 0.956 sum -24.404 5.586 4.885 25.507 Atomic orbital electron populations 1.24139 0.96011 1.02663 1.00263 1.22958 0.96177 0.97346 1.00527 1.19345 0.94790 0.93717 0.94132 1.22098 0.98397 0.98827 1.01292 1.22015 0.99360 1.02531 0.96703 1.21746 0.99501 0.94880 1.00500 1.21015 0.79177 0.88884 0.81029 1.90584 1.65790 1.51873 1.36403 1.46188 1.43941 1.21224 1.25477 1.19230 0.92481 0.86494 0.93307 1.19962 0.97948 1.11018 0.99355 1.23024 0.94191 0.98419 0.88808 1.46352 1.14322 1.39998 1.16751 0.69943 1.77435 1.14444 1.13417 1.09560 1.21870 0.94279 0.97352 0.92813 1.20448 0.93834 0.93532 0.95142 0.88565 1.22871 0.98179 0.95196 0.98811 1.21786 0.90902 0.89185 0.95175 1.44788 1.04769 1.02382 1.83134 1.19423 0.84165 0.93304 1.40028 0.90645 1.25627 1.02642 0.94948 1.02662 1.70044 1.35126 0.97200 1.57325 0.85040 0.79420 0.77076 0.77554 1.21219 1.19709 1.21640 1.21367 0.89146 0.90596 0.96894 0.87752 0.87596 0.86814 0.91519 0.92935 0.92167 0.93160 0.93151 0.91605 0.87701 0.86839 0.75533 0.89771 0.93037 0.75906 0.92555 0.89291 0.98967 0.90873 0.94245 0.96460 0.96346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.49 13.70 67.78 0.93 -1.57 16 2 C -0.15 -2.21 8.76 25.65 0.22 -1.98 16 3 C -0.02 -0.33 0.74 -52.93 -0.04 -0.37 16 4 C -0.15 -2.62 6.83 71.98 0.49 -2.13 16 5 C -0.15 -3.14 8.16 71.98 0.59 -2.55 16 6 C -0.13 -1.90 4.75 29.85 0.14 -1.76 16 7 C 0.51 10.29 7.24 87.65 0.63 10.92 16 8 O -0.57 -15.17 11.35 -3.06 -0.03 -15.21 16 9 N -0.72 -12.71 5.55 -466.78 -2.59 -15.30 16 10 C 0.21 4.19 5.65 85.63 0.48 4.67 16 11 C -0.27 -5.69 5.47 -20.14 -0.11 -5.80 16 12 C 0.11 1.52 11.90 83.54 0.99 2.52 16 13 N -0.47 -8.63 7.36 -57.59 -0.42 -9.05 16 14 H 0.45 5.20 8.96 -213.33 -1.91 3.29 16 15 N -0.33 -9.91 12.33 -47.38 -0.58 -10.50 16 16 C 0.10 3.07 5.76 43.10 0.25 3.32 16 17 C -0.01 -0.31 3.36 -10.35 -0.03 -0.35 16 18 H 0.10 3.23 7.32 -2.38 -0.02 3.21 16 19 C -0.11 -4.31 6.53 32.06 0.21 -4.10 16 20 C 0.15 7.89 5.91 86.93 0.51 8.40 16 21 N -0.62 -34.15 3.39 -691.55 -2.35 -36.50 16 22 C -0.24 -14.18 10.27 84.03 0.86 -13.32 16 23 H 0.08 4.32 7.83 -2.91 -0.02 4.30 16 24 C -0.07 -3.89 5.49 84.86 0.47 -3.43 16 25 N -0.95 -57.75 10.08 21.65 0.22 -57.53 16 26 Si 0.98 47.12 29.55 68.60 2.03 49.14 16 27 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 28 H -0.27 -12.50 7.11 99.48 0.71 -11.80 16 29 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 30 C 0.15 6.61 6.83 86.73 0.59 7.20 16 31 H 0.10 1.30 5.69 -2.91 -0.02 1.28 16 32 H 0.11 1.10 8.06 -2.91 -0.02 1.08 16 33 H 0.11 1.51 8.06 -2.91 -0.02 1.48 16 34 H 0.07 1.48 5.51 -2.39 -0.01 1.47 16 35 H 0.05 0.89 7.50 -2.39 -0.02 0.87 16 36 H 0.06 0.88 7.50 -2.39 -0.02 0.86 16 37 H 0.05 1.02 8.14 -2.38 -0.02 1.00 16 38 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 39 H 0.07 1.71 5.51 -2.39 -0.01 1.70 16 40 H 0.10 1.41 8.14 -2.38 -0.02 1.39 16 41 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 42 H 0.41 5.97 8.46 -92.71 -0.78 5.18 16 43 H 0.08 1.46 8.14 -2.38 -0.02 1.44 16 44 H 0.05 1.30 7.77 -2.39 -0.02 1.28 16 45 H 0.22 0.94 8.06 -2.91 -0.02 0.91 16 46 H 0.06 2.30 7.88 -2.39 -0.02 2.28 16 47 H 0.09 2.84 8.14 -2.39 -0.02 2.82 16 48 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 49 H 0.07 4.25 5.86 -2.39 -0.01 4.24 16 50 H 0.25 14.58 8.31 -92.71 -0.77 13.81 16 51 H 0.02 0.82 7.68 -2.39 -0.02 0.80 16 52 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 Total: -1.00 -77.32 409.34 1.70 -75.62 By element: Atomic # 1 Polarization: 21.41 SS G_CDS: -1.76 Total: 19.65 kcal Atomic # 6 Polarization: -7.52 SS G_CDS: 7.19 Total: -0.33 kcal Atomic # 7 Polarization: -123.15 SS G_CDS: -5.73 Total: -128.88 kcal Atomic # 8 Polarization: -15.17 SS G_CDS: -0.03 Total: -15.21 kcal Atomic # 14 Polarization: 47.12 SS G_CDS: 2.03 Total: 49.14 kcal Total: -77.32 1.70 -75.62 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001130392280.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.909 kcal (2) G-P(sol) polarization free energy of solvation -77.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.621 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds