Wall clock time and date at job start Wed Apr 1 2020 04:26:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50702 * 120.00171 * 2 1 4 4 C 1.53009 * 109.46977 * 359.97438 * 3 2 1 5 5 C 1.53004 * 109.47187 * 240.00099 * 3 2 1 6 6 C 1.52992 * 109.47387 * 119.99531 * 3 2 1 7 7 C 1.50702 * 109.47387 * 180.02562 * 6 3 2 8 8 O 1.21284 * 119.99587 * 0.02562 * 7 6 3 9 9 N 1.34777 * 120.00189 * 180.02562 * 7 6 3 10 10 C 1.47021 * 125.64605 * 180.02562 * 9 7 6 11 11 C 1.54323 * 107.26856 * 178.98391 * 10 9 7 12 12 H 1.08992 * 110.72167 * 96.17104 * 11 10 9 13 13 C 1.50708 * 110.71932 * 219.44292 * 11 10 9 14 14 C 1.34675 * 126.58720 * 78.20830 * 13 11 10 15 15 N 1.34132 * 108.01460 * 179.87352 * 14 13 11 16 16 C 1.30503 * 109.25768 * 0.39825 * 15 14 13 17 17 N 1.35049 * 108.69927 * 359.75769 * 16 15 14 18 18 C 1.46498 * 126.39384 * 179.97438 * 17 16 15 19 19 C 1.55157 * 102.94199 * 337.80511 * 11 10 9 20 20 H 1.09005 * 111.00558 * 277.38910 * 19 11 10 21 21 N 1.46506 * 111.00345 * 153.57966 * 19 11 10 22 22 C 1.36931 * 119.99939 * 155.00103 * 21 19 11 23 23 H 1.08000 * 120.00644 * 359.97438 * 22 21 19 24 24 C 1.38815 * 119.99715 * 179.97438 * 22 21 19 25 25 N 1.31611 * 120.00107 * 0.02562 * 24 22 21 26 26 Si 1.86805 * 119.99746 * 179.72150 * 24 22 21 27 27 H 1.48500 * 109.46781 * 90.00854 * 26 24 22 28 28 H 1.48496 * 109.47225 * 210.00413 * 26 24 22 29 29 H 1.48494 * 109.47296 * 330.00424 * 26 24 22 30 30 C 1.47420 * 125.64640 * 0.04767 * 9 7 6 31 31 H 1.08000 * 119.99682 * 180.02562 * 1 2 3 32 32 H 1.07998 * 119.99711 * 0.02562 * 1 2 3 33 33 H 1.07999 * 120.00159 * 179.97438 * 2 1 3 34 34 H 1.08993 * 109.46969 * 180.02562 * 4 3 2 35 35 H 1.09000 * 109.46895 * 300.00574 * 4 3 2 36 36 H 1.09004 * 109.46622 * 59.99957 * 4 3 2 37 37 H 1.08998 * 109.46964 * 299.99760 * 5 3 2 38 38 H 1.08995 * 109.47053 * 59.99647 * 5 3 2 39 39 H 1.09001 * 109.47024 * 179.97438 * 5 3 2 40 40 H 1.09005 * 109.47139 * 60.00105 * 6 3 2 41 41 H 1.08997 * 109.47719 * 300.00182 * 6 3 2 42 42 H 1.09002 * 109.88317 * 59.56969 * 10 9 7 43 43 H 1.08992 * 110.01453 * 298.47289 * 10 9 7 44 44 H 1.08000 * 125.99198 * 0.02799 * 14 13 11 45 45 H 1.07997 * 125.65015 * 179.73225 * 16 15 14 46 46 H 1.08994 * 109.46827 * 269.99506 * 18 17 16 47 47 H 1.08997 * 109.47569 * 30.00009 * 18 17 16 48 48 H 1.09007 * 109.46816 * 149.99913 * 18 17 16 49 49 H 0.97000 * 119.99307 * 334.99897 * 21 19 11 50 50 H 0.97000 * 120.00330 * 179.97438 * 25 24 22 51 51 H 1.09004 * 110.36453 * 85.25457 * 30 9 7 52 52 H 1.09000 * 110.37178 * 322.92871 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 1.0693 2.4681 -0.0006 5 6 2.9432 1.3861 -1.2493 6 6 2.9431 1.3862 1.2492 7 6 3.6961 2.6916 1.2495 8 8 3.5439 3.4796 0.3403 9 7 4.5388 2.9833 2.2602 10 6 5.3321 4.2146 2.3859 11 6 6.1231 4.1170 3.7075 12 1 7.1322 3.7469 3.5265 13 6 6.1604 5.4517 4.4064 14 6 5.1698 6.0066 5.1306 15 7 5.6015 7.1930 5.5835 16 6 6.8189 7.3981 5.1604 17 7 7.2055 6.3355 4.4221 18 6 8.5012 6.1615 3.7611 19 6 5.3008 3.0897 4.5295 20 1 4.4566 3.5707 5.0236 21 7 6.1489 2.3959 5.5020 22 6 5.5950 1.8583 6.6330 23 1 4.5330 1.9461 6.8085 24 6 6.3986 1.2005 7.5542 25 7 7.6929 1.0940 7.3407 26 14 5.6442 0.4739 9.1009 27 1 5.2274 -0.9268 8.8374 28 1 6.6459 0.4943 10.1970 29 1 4.4596 1.2765 9.4980 30 6 4.8178 2.1202 3.4223 31 1 -0.5399 -0.9353 0.0004 32 1 -0.5399 0.9353 -0.0004 33 1 1.8500 -0.9353 0.0004 34 1 1.6143 3.4120 -0.0011 35 1 0.4429 2.4101 -0.8908 36 1 0.4423 2.4105 0.8892 37 1 3.6515 0.5577 -1.2493 38 1 2.3166 1.3284 -2.1392 39 1 3.4879 2.3303 -1.2495 40 1 3.6514 0.5577 1.2493 41 1 2.3165 1.3285 2.1392 42 1 4.6708 5.0806 2.4129 43 1 6.0220 4.3013 1.5466 44 1 4.1990 5.5714 5.3163 45 1 7.4178 8.2730 5.3663 46 1 8.4521 6.5707 2.7521 47 1 9.2715 6.6842 4.3281 48 1 8.7441 5.1000 3.7112 49 1 7.1029 2.3174 5.3446 50 1 8.2545 0.6346 7.9845 51 1 5.6000 1.4004 3.1811 52 1 3.9110 1.6047 3.7385 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001131004039.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:26:28 Heat of formation + Delta-G solvation = 66.764307 kcal Electronic energy + Delta-G solvation = -31444.967895 eV Core-core repulsion = 27446.734894 eV Total energy + Delta-G solvation = -3998.233000 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.88375 -40.23602 -38.27146 -36.64524 -34.16631 -33.82853 -32.38611 -31.32412 -30.70678 -28.75946 -27.60022 -27.25740 -27.08652 -26.79542 -24.09372 -23.21432 -22.10522 -21.65054 -20.42705 -19.29962 -19.05685 -18.13540 -17.56189 -17.01030 -16.67185 -16.03677 -15.51196 -15.44642 -15.21025 -14.95054 -14.44044 -14.24031 -13.97488 -13.63807 -13.50041 -13.49306 -13.14229 -13.01135 -12.89214 -12.69051 -12.65658 -12.50019 -12.35857 -11.95769 -11.73665 -11.69032 -11.53172 -11.22916 -11.08951 -10.96458 -10.90346 -10.87926 -10.65633 -10.52038 -10.17645 -9.87589 -9.65275 -9.48861 -9.38194 -9.31872 -9.09385 -8.41733 -8.00250 -7.16735 -5.91525 -3.22385 2.18375 2.27887 2.77789 2.95123 3.18518 3.36544 3.43531 3.44260 3.48162 4.43603 4.55742 4.72509 4.74479 4.78592 4.83288 4.91499 4.92634 4.98083 5.11002 5.16968 5.21561 5.31456 5.33157 5.44161 5.49151 5.52616 5.57623 5.60300 5.67595 5.69964 5.71537 5.78339 5.85246 5.98595 6.00124 6.01187 6.05821 6.10144 6.18302 6.24835 6.36175 6.42836 6.48990 6.56140 6.59404 6.73082 6.74350 7.03699 7.42728 7.58468 7.72620 8.24511 8.34517 8.35110 9.37750 9.88010 10.22849 11.30371 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.007746 B = 0.003706 C = 0.002749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3613.927415 B = 7553.081259 C =10184.371564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.143 4.143 3 C -0.020 4.020 4 C -0.155 4.155 5 C -0.148 4.148 6 C -0.124 4.124 7 C 0.530 3.470 8 O -0.544 6.544 9 N -0.613 5.613 10 C 0.125 3.875 11 C -0.038 4.038 12 H 0.088 0.912 13 C 0.008 3.992 14 C -0.015 4.015 15 N -0.494 5.494 16 C 0.170 3.830 17 N -0.459 5.459 18 C 0.072 3.928 19 C 0.187 3.813 20 H 0.076 0.924 21 N -0.705 5.705 22 C -0.247 4.247 23 H 0.074 0.926 24 C -0.005 4.005 25 N -0.930 5.930 26 Si 0.907 3.093 27 H -0.288 1.288 28 H -0.291 1.291 29 H -0.280 1.280 30 C 0.070 3.930 31 H 0.093 0.907 32 H 0.103 0.897 33 H 0.107 0.893 34 H 0.087 0.913 35 H 0.051 0.949 36 H 0.049 0.951 37 H 0.046 0.954 38 H 0.049 0.951 39 H 0.087 0.913 40 H 0.093 0.907 41 H 0.094 0.906 42 H 0.070 0.930 43 H 0.062 0.938 44 H 0.165 0.835 45 H 0.200 0.800 46 H 0.073 0.927 47 H 0.085 0.915 48 H 0.087 0.913 49 H 0.386 0.614 50 H 0.257 0.743 51 H 0.072 0.928 52 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.077 4.067 -14.232 15.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.161 4.161 3 C -0.020 4.020 4 C -0.212 4.212 5 C -0.205 4.205 6 C -0.164 4.164 7 C 0.320 3.680 8 O -0.423 6.423 9 N -0.347 5.347 10 C 0.001 3.999 11 C -0.060 4.060 12 H 0.106 0.894 13 C -0.107 4.107 14 C -0.163 4.163 15 N -0.212 5.212 16 C -0.111 4.111 17 N -0.142 5.142 18 C -0.071 4.071 19 C 0.074 3.926 20 H 0.094 0.906 21 N -0.344 5.344 22 C -0.378 4.378 23 H 0.092 0.908 24 C -0.202 4.202 25 N -0.577 5.577 26 Si 0.737 3.263 27 H -0.216 1.216 28 H -0.217 1.217 29 H -0.205 1.205 30 C -0.056 4.056 31 H 0.112 0.888 32 H 0.121 0.879 33 H 0.125 0.875 34 H 0.105 0.895 35 H 0.070 0.930 36 H 0.068 0.932 37 H 0.066 0.934 38 H 0.068 0.932 39 H 0.105 0.895 40 H 0.111 0.889 41 H 0.112 0.888 42 H 0.088 0.912 43 H 0.081 0.919 44 H 0.182 0.818 45 H 0.217 0.783 46 H 0.092 0.908 47 H 0.104 0.896 48 H 0.105 0.895 49 H 0.220 0.780 50 H 0.066 0.934 51 H 0.090 0.910 52 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -4.589 4.939 -14.147 15.671 hybrid contribution 0.679 -1.280 0.518 1.539 sum -3.910 3.659 -13.628 14.643 Atomic orbital electron populations 1.23995 0.96173 1.01974 1.01405 1.22967 0.95947 0.97678 0.99501 1.19375 0.94920 0.93180 0.94521 1.22182 0.98522 0.99761 1.00749 1.22047 0.99200 1.03541 0.95749 1.21672 0.99161 0.95697 0.99866 1.20291 0.78729 0.88503 0.80519 1.90545 1.65153 1.51129 1.35492 1.48540 1.42835 1.20184 1.23094 1.21819 0.94032 0.87836 0.96202 1.20925 1.00704 0.90600 0.93731 0.89377 1.20748 0.89368 0.94003 1.06570 1.21922 1.00051 0.92987 1.01298 1.70232 1.09715 1.17755 1.23465 1.24778 0.94488 0.93731 0.98114 1.45206 1.13029 1.16180 1.39768 1.22008 0.82752 1.04478 0.97848 1.21318 0.93509 0.89327 0.88489 0.90603 1.42234 1.06728 1.64848 1.20625 1.19219 0.93041 1.28506 0.97010 0.90829 1.24733 0.95445 1.01050 0.98936 1.69643 1.03433 1.47485 1.37147 0.86200 0.78101 0.79051 0.82909 1.21560 1.21740 1.20520 1.23557 1.01330 0.95129 0.85570 0.88817 0.87852 0.87505 0.89476 0.92997 0.93199 0.93449 0.93182 0.89473 0.88862 0.88779 0.91164 0.91921 0.81756 0.78334 0.90817 0.89578 0.89464 0.78023 0.93358 0.91007 0.90649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.86 13.70 29.01 0.40 -1.46 16 2 C -0.14 -1.43 8.76 -36.03 -0.32 -1.75 16 3 C -0.02 -0.22 0.74 -155.66 -0.11 -0.33 16 4 C -0.16 -1.80 6.83 37.16 0.25 -1.55 16 5 C -0.15 -1.70 8.16 37.16 0.30 -1.40 16 6 C -0.12 -1.46 3.76 -27.89 -0.10 -1.57 16 7 C 0.53 7.52 7.26 -10.98 -0.08 7.44 16 8 O -0.54 -8.76 11.67 5.55 0.06 -8.69 16 9 N -0.61 -8.75 3.33 -170.54 -0.57 -9.32 16 10 C 0.12 1.75 6.45 -3.06 -0.02 1.73 16 11 C -0.04 -0.57 2.89 -89.93 -0.26 -0.83 16 12 H 0.09 1.30 6.97 -51.93 -0.36 0.94 16 13 C 0.01 0.12 5.80 -81.60 -0.47 -0.35 16 14 C -0.01 -0.26 11.02 -17.81 -0.20 -0.46 16 15 N -0.49 -8.64 11.25 -14.66 -0.16 -8.81 16 16 C 0.17 2.42 12.56 -90.37 -1.14 1.28 16 17 N -0.46 -6.28 3.15 -121.36 -0.38 -6.66 16 18 C 0.07 0.68 11.00 59.85 0.66 1.34 16 19 C 0.19 3.25 3.06 -65.79 -0.20 3.05 16 20 H 0.08 1.39 6.55 -51.93 -0.34 1.05 16 21 N -0.71 -15.65 5.24 -51.36 -0.27 -15.92 16 22 C -0.25 -6.27 9.96 -15.06 -0.15 -6.42 16 23 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 24 C 0.00 -0.13 5.50 -17.43 -0.10 -0.23 16 25 N -0.93 -26.31 13.06 55.49 0.72 -25.59 16 26 Si 0.91 21.38 29.55 -169.99 -5.02 16.35 16 27 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 28 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 29 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 30 C 0.07 1.07 6.38 -2.54 -0.02 1.05 16 31 H 0.09 0.76 8.06 -52.49 -0.42 0.33 16 32 H 0.10 0.95 5.69 -52.49 -0.30 0.65 16 33 H 0.11 0.98 8.06 -52.49 -0.42 0.56 16 34 H 0.09 1.20 5.51 -51.93 -0.29 0.91 16 35 H 0.05 0.55 7.50 -51.93 -0.39 0.16 16 36 H 0.05 0.55 7.50 -51.93 -0.39 0.16 16 37 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.09 1.18 5.51 -51.93 -0.29 0.89 16 40 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 41 H 0.09 1.07 7.85 -51.93 -0.41 0.66 16 42 H 0.07 1.04 7.81 -51.93 -0.41 0.64 16 43 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 44 H 0.17 2.76 7.16 -52.49 -0.38 2.39 16 45 H 0.20 1.97 8.06 -52.49 -0.42 1.55 16 46 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 47 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 48 H 0.09 0.86 7.14 -51.92 -0.37 0.48 16 49 H 0.39 9.18 7.76 -40.82 -0.32 8.87 16 50 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 51 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 52 H 0.08 1.11 7.48 -51.93 -0.39 0.72 16 LS Contribution 410.14 15.07 6.18 6.18 Total: -1.00 -31.17 410.14 -9.38 -40.55 By element: Atomic # 1 Polarization: 20.75 SS G_CDS: -8.39 Total: 12.36 kcal Atomic # 6 Polarization: 1.10 SS G_CDS: -1.55 Total: -0.45 kcal Atomic # 7 Polarization: -65.64 SS G_CDS: -0.66 Total: -66.30 kcal Atomic # 8 Polarization: -8.76 SS G_CDS: 0.06 Total: -8.69 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -31.17 -9.38 -40.55 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131004039.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.310 kcal (2) G-P(sol) polarization free energy of solvation -31.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.545 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds