Wall clock time and date at job start Wed Apr 1 2020 04:58:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52995 * 109.47076 * 2 1 4 4 C 1.52999 * 109.47049 * 239.99624 * 2 1 3 5 5 N 1.46503 * 109.47116 * 120.00016 * 2 1 3 6 6 C 1.35037 * 124.88349 * 75.02756 * 5 2 1 7 7 C 1.35369 * 107.22502 * 179.72479 * 6 5 2 8 8 C 1.41510 * 105.50242 * 0.41035 * 7 6 5 9 9 C 1.47706 * 126.51700 * 179.84450 * 8 7 6 10 10 O 1.21574 * 120.00149 * 359.71618 * 9 8 7 11 11 N 1.34771 * 120.00225 * 179.71604 * 9 8 7 12 12 C 1.46504 * 120.00173 * 179.72625 * 11 9 8 13 13 C 1.53004 * 109.46911 * 179.97438 * 12 11 9 14 14 C 1.50702 * 109.46896 * 179.97438 * 13 12 11 15 15 C 1.29448 * 117.69260 * 95.00294 * 14 13 12 16 16 C 1.50321 * 123.64942 * 180.85889 * 15 14 13 17 17 N 1.47003 * 109.16908 * 349.01977 * 16 15 14 18 18 C 1.36939 * 121.37841 * 222.97037 * 17 16 15 19 19 H 1.08003 * 120.00015 * 155.96221 * 18 17 16 20 20 C 1.38808 * 120.00040 * 335.96918 * 18 17 16 21 21 N 1.31629 * 119.99722 * 344.52349 * 20 18 17 22 22 Si 1.86793 * 120.00271 * 164.52346 * 20 18 17 23 23 H 1.48501 * 109.47441 * 59.99766 * 22 20 18 24 24 H 1.48498 * 109.47482 * 179.97438 * 22 20 18 25 25 H 1.48500 * 109.46947 * 299.99601 * 22 20 18 26 26 C 1.47340 * 117.24799 * 42.94686 * 17 16 15 27 27 C 1.49971 * 117.69452 * 274.74131 * 14 13 12 28 28 N 1.28465 * 124.88029 * 255.02072 * 5 2 1 29 29 H 1.09005 * 109.47245 * 300.00027 * 1 2 3 30 30 H 1.08994 * 109.47365 * 60.00374 * 1 2 3 31 31 H 1.09001 * 109.47154 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47068 * 180.02562 * 3 2 1 33 33 H 1.09008 * 109.46957 * 300.00045 * 3 2 1 34 34 H 1.08997 * 109.47325 * 60.00204 * 3 2 1 35 35 H 1.08991 * 109.47833 * 300.00233 * 4 2 1 36 36 H 1.09008 * 109.46897 * 60.00008 * 4 2 1 37 37 H 1.08997 * 109.47411 * 179.97438 * 4 2 1 38 38 H 1.07993 * 126.38712 * 359.97438 * 6 5 2 39 39 H 1.08001 * 127.24894 * 180.25855 * 7 6 5 40 40 H 0.97005 * 119.99858 * 359.97438 * 11 9 8 41 41 H 1.08992 * 109.46740 * 299.99574 * 12 11 9 42 42 H 1.09000 * 109.46923 * 59.99864 * 12 11 9 43 43 H 1.08996 * 109.47227 * 300.00039 * 13 12 11 44 44 H 1.09004 * 109.46986 * 59.99890 * 13 12 11 45 45 H 1.08001 * 118.17845 * 0.87861 * 15 14 13 46 46 H 1.09000 * 109.52186 * 108.92896 * 16 15 14 47 47 H 1.09002 * 109.52276 * 229.11475 * 16 15 14 48 48 H 0.97003 * 119.99536 * 180.02562 * 21 20 18 49 49 H 1.09001 * 109.77822 * 57.81132 * 26 17 16 50 50 H 1.08997 * 109.77918 * 178.61828 * 26 17 16 51 51 H 1.09002 * 109.31154 * 281.28855 * 27 14 13 52 52 H 1.08998 * 109.31336 * 40.71457 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2492 5 7 2.0183 -0.6906 1.1962 6 6 2.0059 -2.0291 1.3743 7 6 2.5415 -2.2764 2.5927 8 6 2.8627 -1.0070 3.1293 9 6 3.4720 -0.7387 4.4478 10 8 3.7422 -1.6615 5.1917 11 7 3.7283 0.5291 4.8263 12 6 4.3271 0.7956 6.1366 13 6 4.5126 2.3038 6.3153 14 6 5.1280 2.5779 7.6634 15 6 6.4142 2.7119 7.7216 16 6 7.1681 2.9687 8.9964 17 7 6.2128 3.2973 10.0643 18 6 6.4521 4.3174 10.9461 19 1 5.6280 4.7986 11.4517 20 6 7.7539 4.7329 11.1899 21 7 8.7660 3.9735 10.8271 22 14 8.0695 6.3696 12.0329 23 1 7.4370 6.3646 13.3764 24 1 9.5327 6.5788 12.1760 25 1 7.4898 7.4666 11.2169 26 6 4.9868 2.4842 10.1464 27 6 4.2065 2.6823 8.8420 28 7 2.5200 -0.1099 2.2264 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 3.1299 1.4425 -0.0005 33 1 1.6765 1.9563 -0.8900 34 1 1.6766 1.9563 0.8900 35 1 1.6767 -1.7489 -1.2493 36 1 1.6765 -0.2075 -2.1392 37 1 3.1299 -0.7210 -1.2495 38 1 1.6408 -2.7653 0.6736 39 1 2.6900 -3.2395 3.0583 40 1 3.5131 1.2655 4.2327 41 1 3.6719 0.4144 6.9197 42 1 5.2961 0.3006 6.2007 43 1 5.1680 2.6846 5.5321 44 1 3.5437 2.7991 6.2510 45 1 6.9770 2.6351 6.8030 46 1 7.7308 2.0770 9.2728 47 1 7.8542 3.8033 8.8520 48 1 9.6757 4.2637 10.9978 49 1 5.2488 1.4332 10.2680 50 1 4.3813 2.8141 10.9905 51 1 3.7352 3.6651 8.8452 52 1 3.4351 1.9160 8.7655 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001160273637.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:58:18 Heat of formation + Delta-G solvation = 72.132396 kcal Electronic energy + Delta-G solvation = -29598.815171 eV Core-core repulsion = 25600.814948 eV Total energy + Delta-G solvation = -3998.000222 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -43.03428 -39.44886 -37.83430 -37.28700 -35.32827 -33.49998 -31.55505 -31.22516 -30.89117 -29.74971 -28.60523 -28.13766 -27.87645 -25.59037 -24.18873 -22.89464 -22.44091 -21.89554 -20.90399 -20.46629 -19.74407 -18.02292 -17.54471 -16.71794 -16.41969 -16.12278 -15.53382 -15.31864 -14.92345 -14.87372 -14.41158 -14.28556 -14.09729 -13.98182 -13.78530 -13.50650 -13.34579 -13.15938 -13.01054 -12.94820 -12.68455 -12.55330 -12.43099 -12.14581 -11.91617 -11.83856 -11.77951 -11.50603 -11.35378 -11.07896 -10.92770 -10.85357 -10.68353 -10.32422 -10.25312 -10.06569 -9.75675 -9.51626 -9.48381 -9.33866 -8.98433 -8.59805 -7.85174 -6.66658 -5.73355 -3.11915 1.41378 1.91105 2.01377 2.90710 3.27768 3.38172 3.42382 3.47620 3.48993 3.76324 4.04771 4.15472 4.39079 4.42027 4.54347 4.77695 4.82448 4.95320 5.00257 5.03954 5.12662 5.16057 5.20506 5.28233 5.30015 5.35967 5.44778 5.46300 5.48588 5.54074 5.63991 5.64900 5.72784 5.88004 6.09980 6.12553 6.16827 6.23630 6.29173 6.44791 6.47010 6.51280 6.62606 6.85793 6.97650 7.30524 7.38412 7.42693 7.48540 7.73229 7.80135 7.95255 8.20882 8.44901 9.26198 9.89219 10.48205 11.36968 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.023478 B = 0.001684 C = 0.001635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.343995 B =16621.259121 C =17118.712727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.167 3.833 3 C -0.148 4.148 4 C -0.160 4.160 5 N -0.272 5.272 6 C -0.020 4.020 7 C -0.178 4.178 8 C -0.019 4.019 9 C 0.601 3.399 10 O -0.533 6.533 11 N -0.717 5.717 12 C 0.124 3.876 13 C -0.091 4.091 14 C -0.142 4.142 15 C -0.147 4.147 16 C 0.196 3.804 17 N -0.595 5.595 18 C -0.245 4.245 19 H 0.067 0.933 20 C -0.002 4.002 21 N -0.910 5.910 22 Si 0.905 3.095 23 H -0.283 1.283 24 H -0.291 1.291 25 H -0.285 1.285 26 C 0.143 3.857 27 C -0.091 4.091 28 N -0.257 5.257 29 H 0.068 0.932 30 H 0.082 0.918 31 H 0.066 0.934 32 H 0.068 0.932 33 H 0.076 0.924 34 H 0.075 0.925 35 H 0.068 0.932 36 H 0.084 0.916 37 H 0.069 0.931 38 H 0.178 0.822 39 H 0.161 0.839 40 H 0.404 0.596 41 H 0.071 0.929 42 H 0.071 0.929 43 H 0.066 0.934 44 H 0.067 0.933 45 H 0.091 0.909 46 H 0.038 0.962 47 H 0.090 0.910 48 H 0.254 0.746 49 H 0.024 0.976 50 H 0.055 0.945 51 H 0.062 0.938 52 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.137 -9.456 -28.061 34.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.085 3.915 3 C -0.206 4.206 4 C -0.218 4.218 5 N -0.062 5.062 6 C -0.163 4.163 7 C -0.206 4.206 8 C -0.179 4.179 9 C 0.385 3.615 10 O -0.408 6.408 11 N -0.368 5.368 12 C 0.002 3.998 13 C -0.129 4.129 14 C -0.142 4.142 15 C -0.167 4.167 16 C 0.072 3.928 17 N -0.319 5.319 18 C -0.374 4.374 19 H 0.085 0.915 20 C -0.200 4.200 21 N -0.555 5.555 22 Si 0.735 3.265 23 H -0.210 1.210 24 H -0.217 1.217 25 H -0.212 1.212 26 C 0.016 3.984 27 C -0.130 4.130 28 N -0.093 5.093 29 H 0.087 0.913 30 H 0.101 0.899 31 H 0.085 0.915 32 H 0.087 0.913 33 H 0.095 0.905 34 H 0.094 0.906 35 H 0.087 0.913 36 H 0.103 0.897 37 H 0.088 0.912 38 H 0.195 0.805 39 H 0.179 0.821 40 H 0.239 0.761 41 H 0.089 0.911 42 H 0.089 0.911 43 H 0.085 0.915 44 H 0.085 0.915 45 H 0.109 0.891 46 H 0.056 0.944 47 H 0.108 0.892 48 H 0.064 0.936 49 H 0.042 0.958 50 H 0.074 0.926 51 H 0.081 0.919 52 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -16.791 -8.858 -27.756 33.627 hybrid contribution 0.130 0.242 0.090 0.289 sum -16.661 -8.617 -27.665 33.425 Atomic orbital electron populations 1.22254 0.92154 1.03462 1.03899 1.21065 0.95096 0.94120 0.81206 1.21975 1.02531 0.92392 1.03657 1.22240 1.02632 1.01114 0.95773 1.45804 1.42596 1.04797 1.12999 1.22714 1.07245 0.86339 0.99979 1.21782 1.05072 0.98805 0.94957 1.21988 1.08041 0.91674 0.96156 1.16901 0.77794 0.83110 0.83670 1.90812 1.52820 1.44074 1.53092 1.45948 1.63345 1.07618 1.19898 1.21479 0.98737 0.96367 0.83259 1.20906 1.01290 0.93925 0.96785 1.20228 0.95010 1.05220 0.93781 1.23115 0.95450 0.97700 1.00400 1.19702 0.90627 1.00022 0.82489 1.44124 1.19324 1.36176 1.32247 1.19143 0.91531 1.07997 1.18739 0.91481 1.24988 0.95959 0.99003 1.00074 1.70018 0.98077 1.35866 1.51537 0.86325 0.76775 0.84053 0.79367 1.20966 1.21667 1.21154 1.20993 0.88988 0.94235 0.94147 1.20794 0.96744 1.00359 0.95126 1.73443 1.13859 1.26483 0.95510 0.91286 0.89901 0.91509 0.91283 0.90505 0.90572 0.91291 0.89671 0.91218 0.80507 0.82132 0.76113 0.91100 0.91088 0.91521 0.91465 0.89071 0.94421 0.89199 0.93620 0.95752 0.92595 0.91948 0.92871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.59 8.70 37.16 0.32 -0.26 16 2 C 0.17 0.82 1.21 -131.82 -0.16 0.66 16 3 C -0.15 -0.74 8.01 37.16 0.30 -0.44 16 4 C -0.16 -0.48 8.27 37.16 0.31 -0.17 16 5 N -0.27 -2.21 3.16 -48.62 -0.15 -2.36 16 6 C -0.02 -0.16 10.52 -17.16 -0.18 -0.34 16 7 C -0.18 -1.87 10.81 -39.36 -0.43 -2.29 16 8 C -0.02 -0.23 7.13 -82.76 -0.59 -0.82 16 9 C 0.60 8.81 7.82 -12.40 -0.10 8.72 16 10 O -0.53 -9.59 16.93 5.30 0.09 -9.50 16 11 N -0.72 -9.26 5.55 -61.29 -0.34 -9.60 16 12 C 0.12 1.76 5.66 -4.04 -0.02 1.74 16 13 C -0.09 -1.27 5.32 -27.88 -0.15 -1.42 16 14 C -0.14 -2.54 5.11 -100.99 -0.52 -3.05 16 15 C -0.15 -2.95 9.47 -35.78 -0.34 -3.28 16 16 C 0.20 4.86 5.23 -5.10 -0.03 4.83 16 17 N -0.60 -15.42 3.01 -173.57 -0.52 -15.94 16 18 C -0.24 -6.86 9.71 -15.06 -0.15 -7.01 16 19 H 0.07 1.83 7.88 -52.48 -0.41 1.42 16 20 C 0.00 -0.07 5.01 -17.43 -0.09 -0.16 16 21 N -0.91 -26.80 11.08 55.49 0.61 -26.18 16 22 Si 0.90 22.08 29.58 -169.99 -5.03 17.05 16 23 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 24 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 25 H -0.28 -6.89 7.11 56.52 0.40 -6.48 16 26 C 0.14 3.11 6.59 -3.44 -0.02 3.08 16 27 C -0.09 -1.67 5.95 -28.09 -0.17 -1.84 16 28 N -0.26 -2.76 10.61 33.42 0.35 -2.41 16 29 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.08 0.15 8.14 -51.93 -0.42 -0.27 16 31 H 0.07 0.22 8.14 -51.93 -0.42 -0.20 16 32 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.08 0.22 8.14 -51.92 -0.42 -0.21 16 34 H 0.08 0.47 7.99 -51.93 -0.42 0.06 16 35 H 0.07 0.15 7.27 -51.93 -0.38 -0.23 16 36 H 0.08 0.11 8.14 -51.92 -0.42 -0.31 16 37 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 38 H 0.18 0.70 7.47 -52.49 -0.39 0.31 16 39 H 0.16 1.56 8.06 -52.49 -0.42 1.14 16 40 H 0.40 4.43 8.20 -40.82 -0.33 4.10 16 41 H 0.07 1.07 8.11 -51.93 -0.42 0.65 16 42 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 43 H 0.07 0.88 7.78 -51.93 -0.40 0.47 16 44 H 0.07 0.86 8.11 -51.93 -0.42 0.44 16 45 H 0.09 1.63 7.73 -52.49 -0.41 1.22 16 46 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 47 H 0.09 2.45 6.41 -51.93 -0.33 2.11 16 48 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 49 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 50 H 0.06 1.17 7.96 -51.93 -0.41 0.76 16 51 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 52 H 0.05 0.85 8.10 -51.93 -0.42 0.43 16 LS Contribution 420.69 15.07 6.34 6.34 Total: -1.00 -34.01 420.69 -9.61 -43.61 By element: Atomic # 1 Polarization: 10.01 SS G_CDS: -8.96 Total: 1.05 kcal Atomic # 6 Polarization: -0.05 SS G_CDS: -2.00 Total: -2.05 kcal Atomic # 7 Polarization: -56.45 SS G_CDS: -0.05 Total: -56.50 kcal Atomic # 8 Polarization: -9.59 SS G_CDS: 0.09 Total: -9.50 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.03 Total: 17.05 kcal Total LS contribution 6.34 Total: 6.34 kcal Total: -34.01 -9.61 -43.61 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160273637.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.744 kcal (2) G-P(sol) polarization free energy of solvation -34.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.612 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds