Wall clock time and date at job start Wed Apr 1 2020 04:58:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47156 * 2 1 4 4 C 1.52999 * 109.47073 * 239.99980 * 2 1 3 5 5 N 1.46497 * 109.47174 * 120.00247 * 2 1 3 6 6 C 1.34258 * 125.75539 * 75.31523 * 5 2 1 7 7 C 1.38050 * 107.41691 * 180.14506 * 6 5 2 8 8 C 1.47419 * 126.41550 * 179.87188 * 7 6 5 9 9 O 1.21608 * 120.00138 * 359.71393 * 8 7 6 10 10 N 1.34776 * 120.00150 * 179.71114 * 8 7 6 11 11 C 1.46502 * 120.00103 * 179.97438 * 10 8 7 12 12 C 1.53000 * 109.47446 * 180.02562 * 11 10 8 13 13 C 1.50694 * 109.47760 * 179.97438 * 12 11 10 14 14 C 1.29457 * 117.69284 * 94.99256 * 13 12 11 15 15 C 1.50319 * 123.65117 * 180.57773 * 14 13 12 16 16 N 1.47010 * 109.16396 * 349.28755 * 15 14 13 17 17 C 1.36939 * 121.37262 * 222.96294 * 16 15 14 18 18 H 1.08006 * 119.99321 * 155.96770 * 17 16 15 19 19 C 1.38810 * 120.00352 * 335.97266 * 17 16 15 20 20 N 1.31617 * 119.99875 * 344.52484 * 19 17 16 21 21 Si 1.86807 * 119.99988 * 164.52017 * 19 17 16 22 22 H 1.48495 * 109.46984 * 60.00138 * 21 19 17 23 23 H 1.48500 * 109.46904 * 180.02562 * 21 19 17 24 24 H 1.48499 * 109.47058 * 299.99897 * 21 19 17 25 25 C 1.47338 * 117.25069 * 42.95114 * 16 15 14 26 26 C 1.49964 * 117.69058 * 275.22400 * 13 12 11 27 27 C 1.41288 * 107.16887 * 359.60693 * 7 6 5 28 28 N 1.30445 * 108.02463 * 0.24283 * 27 7 6 29 29 H 1.08996 * 109.47303 * 299.99848 * 1 2 3 30 30 H 1.08997 * 109.47513 * 59.99963 * 1 2 3 31 31 H 1.09006 * 109.47171 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.46864 * 180.02562 * 3 2 1 33 33 H 1.09003 * 109.47156 * 299.99998 * 3 2 1 34 34 H 1.08996 * 109.46890 * 59.99900 * 3 2 1 35 35 H 1.09000 * 109.47698 * 300.00124 * 4 2 1 36 36 H 1.09003 * 109.47115 * 60.00079 * 4 2 1 37 37 H 1.09004 * 109.47651 * 179.97438 * 4 2 1 38 38 H 1.07997 * 126.29340 * 359.97438 * 6 5 2 39 39 H 0.96994 * 119.99684 * 0.02562 * 10 8 7 40 40 H 1.08994 * 109.47313 * 60.00010 * 11 10 8 41 41 H 1.09007 * 109.47033 * 300.00127 * 11 10 8 42 42 H 1.09006 * 109.47045 * 59.99189 * 12 11 10 43 43 H 1.09004 * 109.46703 * 300.00428 * 12 11 10 44 44 H 1.08003 * 118.17487 * 0.86945 * 14 13 12 45 45 H 1.09004 * 109.52258 * 109.19397 * 15 14 13 46 46 H 1.08999 * 109.52598 * 229.38084 * 15 14 13 47 47 H 0.97002 * 119.99820 * 180.02562 * 20 19 17 48 48 H 1.09002 * 109.78070 * 57.80258 * 25 16 15 49 49 H 1.09002 * 109.77840 * 178.61854 * 25 16 15 50 50 H 1.08995 * 109.43781 * 40.81758 * 26 13 12 51 51 H 1.09004 * 109.12988 * 281.42366 * 26 13 12 52 52 H 1.07996 * 125.99073 * 180.20309 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2492 5 7 2.0183 -0.6906 1.1961 6 6 2.0194 -2.0192 1.3894 7 6 2.5570 -2.2546 2.6389 8 6 2.7514 -3.5706 3.2742 9 8 2.4197 -4.5835 2.6886 10 7 3.2969 -3.6512 4.5040 11 6 3.4897 -4.9590 5.1356 12 6 4.1207 -4.7705 6.5166 13 6 4.3184 -6.1156 7.1665 14 6 5.4766 -6.6801 7.0408 15 6 5.8158 -8.0240 7.6226 16 7 4.7425 -8.4385 8.5377 17 6 5.0208 -9.0086 9.7512 18 1 4.2982 -8.9536 10.5521 19 6 6.2315 -9.6572 9.9521 20 7 6.9767 -9.9940 8.9208 21 14 6.8033 -10.0518 11.6862 22 1 5.8091 -10.9356 12.3461 23 1 8.1178 -10.7404 11.6292 24 1 6.9380 -8.7925 12.4615 25 6 3.3550 -8.2150 8.0953 26 6 3.1580 -6.7081 7.9089 27 6 2.8916 -0.9984 3.1923 28 7 2.5676 -0.0771 2.3276 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 3.1299 1.4424 -0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6766 1.9563 0.8900 35 1 1.6766 -1.7489 -1.2493 36 1 1.6766 -0.2074 -2.1392 37 1 3.1300 -0.7209 -1.2496 38 1 1.6625 -2.7664 0.6960 39 1 3.5612 -2.8433 4.9712 40 1 4.1469 -5.5686 4.5156 41 1 2.5257 -5.4567 5.2419 42 1 3.4631 -4.1609 7.1364 43 1 5.0846 -4.2725 6.4106 44 1 6.2433 -6.1542 6.4911 45 1 5.9123 -8.7548 6.8196 46 1 6.7558 -7.9571 8.1703 47 1 7.8226 -10.4476 9.0611 48 1 3.1818 -8.7293 7.1500 49 1 2.6626 -8.5868 8.8506 50 1 2.2402 -6.5312 7.3482 51 1 3.0779 -6.2314 8.8859 52 1 3.3369 -0.8303 4.1617 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001160573964.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:58:28 Heat of formation + Delta-G solvation = 66.668517 kcal Electronic energy + Delta-G solvation = -29343.102522 eV Core-core repulsion = 25344.865368 eV Total energy + Delta-G solvation = -3998.237154 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -41.83379 -39.33397 -37.83022 -37.20034 -35.31730 -33.49991 -31.51116 -31.16088 -30.55476 -29.73831 -28.52514 -28.08389 -27.90558 -25.43841 -23.72430 -22.81834 -22.57680 -22.10802 -20.89045 -20.18246 -19.75856 -17.91985 -17.55030 -16.34026 -16.14336 -15.93483 -15.54129 -15.28765 -15.16868 -14.93044 -14.55859 -14.24693 -14.09175 -13.81577 -13.73697 -13.49945 -13.24276 -13.20691 -12.90491 -12.87228 -12.76571 -12.55050 -12.39909 -12.14383 -11.91937 -11.86148 -11.82510 -11.51571 -11.36379 -11.23171 -10.93111 -10.85450 -10.68905 -10.29897 -10.21600 -9.91493 -9.90220 -9.76369 -9.48958 -9.16154 -8.84598 -8.60752 -7.86179 -6.67638 -5.74234 -3.12817 1.27821 1.87352 1.92018 2.91356 3.32950 3.39671 3.41943 3.47239 3.48546 3.81318 4.09303 4.20125 4.35637 4.41218 4.53635 4.81362 4.84440 4.88256 5.01976 5.02541 5.09504 5.17391 5.18394 5.19118 5.24535 5.32838 5.37033 5.44094 5.50208 5.52583 5.62530 5.63936 5.71671 5.87374 6.08968 6.09433 6.13862 6.22939 6.28099 6.45810 6.48596 6.50807 6.61438 6.84756 6.96208 7.21878 7.29444 7.38369 7.46346 7.54735 7.79324 7.94131 8.27202 8.43998 9.25353 9.88356 10.47260 11.36101 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.036188 B = 0.001525 C = 0.001519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 773.558843 B =18359.582678 C =18428.810243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.176 3.824 3 C -0.144 4.144 4 C -0.163 4.163 5 N -0.351 5.351 6 C 0.128 3.872 7 C -0.292 4.292 8 C 0.592 3.408 9 O -0.551 6.551 10 N -0.726 5.726 11 C 0.127 3.873 12 C -0.092 4.092 13 C -0.142 4.142 14 C -0.147 4.147 15 C 0.196 3.804 16 N -0.595 5.595 17 C -0.245 4.245 18 H 0.068 0.932 19 C -0.002 4.002 20 N -0.910 5.910 21 Si 0.905 3.095 22 H -0.283 1.283 23 H -0.291 1.291 24 H -0.285 1.285 25 C 0.143 3.857 26 C -0.091 4.091 27 C 0.078 3.922 28 N -0.294 5.294 29 H 0.067 0.933 30 H 0.081 0.919 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.074 0.926 34 H 0.073 0.927 35 H 0.068 0.932 36 H 0.084 0.916 37 H 0.068 0.932 38 H 0.184 0.816 39 H 0.397 0.603 40 H 0.069 0.931 41 H 0.069 0.931 42 H 0.067 0.933 43 H 0.066 0.934 44 H 0.091 0.909 45 H 0.038 0.962 46 H 0.090 0.910 47 H 0.254 0.746 48 H 0.024 0.976 49 H 0.056 0.944 50 H 0.053 0.947 51 H 0.061 0.939 52 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.057 24.241 -19.582 33.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.094 3.906 3 C -0.201 4.201 4 C -0.221 4.221 5 N -0.131 5.131 6 C -0.023 4.023 7 C -0.307 4.307 8 C 0.379 3.621 9 O -0.430 6.430 10 N -0.377 5.377 11 C 0.004 3.996 12 C -0.129 4.129 13 C -0.143 4.143 14 C -0.167 4.167 15 C 0.072 3.928 16 N -0.319 5.319 17 C -0.375 4.375 18 H 0.085 0.915 19 C -0.199 4.199 20 N -0.555 5.555 21 Si 0.735 3.265 22 H -0.210 1.210 23 H -0.217 1.217 24 H -0.211 1.211 25 C 0.016 3.984 26 C -0.130 4.130 27 C -0.110 4.110 28 N -0.113 5.113 29 H 0.086 0.914 30 H 0.099 0.901 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.093 0.907 34 H 0.092 0.908 35 H 0.087 0.913 36 H 0.103 0.897 37 H 0.088 0.912 38 H 0.201 0.799 39 H 0.231 0.769 40 H 0.087 0.913 41 H 0.087 0.913 42 H 0.085 0.915 43 H 0.085 0.915 44 H 0.109 0.891 45 H 0.055 0.945 46 H 0.108 0.892 47 H 0.064 0.936 48 H 0.042 0.958 49 H 0.074 0.926 50 H 0.072 0.928 51 H 0.080 0.920 52 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -11.201 24.738 -20.343 33.930 hybrid contribution 0.604 -0.687 1.291 1.582 sum -10.596 24.052 -19.052 32.461 Atomic orbital electron populations 1.22287 0.92502 1.03463 1.03679 1.20880 0.94689 0.93973 0.81068 1.21921 1.02316 0.92592 1.03297 1.22297 1.02617 1.01273 0.95960 1.48846 1.45956 1.04170 1.14129 1.22849 0.96164 0.86419 0.96897 1.20289 1.18283 0.94244 0.97882 1.17240 0.76810 0.87243 0.80799 1.90785 1.51636 1.36838 1.63713 1.45849 1.64055 1.10107 1.17667 1.21418 1.01352 0.83714 0.93138 1.20909 1.00734 0.97058 0.94239 1.20226 0.96657 0.95404 1.01983 1.23113 0.95895 0.99322 0.98339 1.19702 0.93135 0.87626 0.92379 1.44120 0.99214 1.70447 1.18069 1.19147 1.02164 1.28078 0.88098 0.91476 1.24982 0.99411 0.98363 0.97193 1.70011 1.14087 1.43200 1.28194 0.86329 0.77832 0.77967 0.84415 1.20958 1.21660 1.21144 1.20955 0.88048 0.91920 0.97438 1.20760 0.94776 0.98972 0.98523 1.24063 0.98059 0.89701 0.99182 1.77130 1.17880 1.21955 0.94315 0.91396 0.90053 0.91539 0.91485 0.90734 0.90836 0.91261 0.89716 0.91249 0.79906 0.76919 0.91286 0.91285 0.91469 0.91538 0.89072 0.94463 0.89193 0.93614 0.95848 0.92579 0.92824 0.92005 0.79466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.70 8.72 37.16 0.32 -0.37 16 2 C 0.18 0.96 1.23 -131.82 -0.16 0.79 16 3 C -0.14 -0.71 8.07 37.16 0.30 -0.41 16 4 C -0.16 -0.64 8.28 37.16 0.31 -0.34 16 5 N -0.35 -2.93 3.41 -48.11 -0.16 -3.09 16 6 C 0.13 1.19 10.39 -16.56 -0.17 1.02 16 7 C -0.29 -3.10 6.13 -105.07 -0.64 -3.75 16 8 C 0.59 7.75 7.81 -12.52 -0.10 7.65 16 9 O -0.55 -9.34 16.90 5.27 0.09 -9.25 16 10 N -0.73 -8.16 5.55 -61.38 -0.34 -8.50 16 11 C 0.13 1.69 5.66 -4.04 -0.02 1.67 16 12 C -0.09 -1.20 5.32 -27.89 -0.15 -1.35 16 13 C -0.14 -2.48 5.11 -101.00 -0.52 -3.00 16 14 C -0.15 -2.89 9.47 -35.78 -0.34 -3.23 16 15 C 0.20 4.80 5.23 -5.10 -0.03 4.78 16 16 N -0.60 -15.27 3.01 -173.67 -0.52 -15.80 16 17 C -0.25 -6.84 9.71 -15.06 -0.15 -6.99 16 18 H 0.07 1.82 7.88 -52.48 -0.41 1.41 16 19 C 0.00 -0.05 5.01 -17.43 -0.09 -0.13 16 20 N -0.91 -26.63 11.08 55.49 0.61 -26.01 16 21 Si 0.90 21.94 29.58 -169.99 -5.03 16.91 16 22 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 23 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 24 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 25 C 0.14 3.07 6.58 -3.53 -0.02 3.05 16 26 C -0.09 -1.64 5.94 -28.18 -0.17 -1.81 16 27 C 0.08 0.70 11.50 -16.98 -0.20 0.50 16 28 N -0.29 -2.85 11.56 30.86 0.36 -2.50 16 29 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.08 0.19 8.14 -51.93 -0.42 -0.23 16 31 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 32 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 33 H 0.07 0.21 8.14 -51.93 -0.42 -0.21 16 34 H 0.07 0.45 8.03 -51.93 -0.42 0.03 16 35 H 0.07 0.26 7.33 -51.93 -0.38 -0.12 16 36 H 0.08 0.18 8.14 -51.93 -0.42 -0.25 16 37 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 38 H 0.18 1.41 7.52 -52.49 -0.39 1.01 16 39 H 0.40 3.25 7.43 -40.82 -0.30 2.95 16 40 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 41 H 0.07 1.00 8.07 -51.92 -0.42 0.58 16 42 H 0.07 0.80 8.11 -51.93 -0.42 0.38 16 43 H 0.07 0.81 7.78 -51.93 -0.40 0.41 16 44 H 0.09 1.59 7.73 -52.48 -0.41 1.18 16 45 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 46 H 0.09 2.43 6.41 -51.93 -0.33 2.09 16 47 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 48 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 49 H 0.06 1.16 7.96 -51.93 -0.41 0.75 16 50 H 0.05 0.84 8.07 -51.93 -0.42 0.42 16 51 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 52 H 0.19 1.08 7.50 -52.49 -0.39 0.69 16 LS Contribution 420.27 15.07 6.33 6.33 Total: -1.00 -34.33 420.27 -9.38 -43.71 By element: Atomic # 1 Polarization: 9.01 SS G_CDS: -8.90 Total: 0.11 kcal Atomic # 6 Polarization: -0.10 SS G_CDS: -1.82 Total: -1.92 kcal Atomic # 7 Polarization: -55.85 SS G_CDS: -0.06 Total: -55.90 kcal Atomic # 8 Polarization: -9.34 SS G_CDS: 0.09 Total: -9.25 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.03 Total: 16.91 kcal Total LS contribution 6.33 Total: 6.33 kcal Total: -34.33 -9.38 -43.71 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160573964.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.382 kcal (2) G-P(sol) polarization free energy of solvation -34.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.714 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds