Wall clock time and date at job start Wed Apr 1 2020 04:58:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47156 * 2 1 4 4 C 1.52999 * 109.47073 * 239.99980 * 2 1 3 5 5 N 1.46497 * 109.47174 * 120.00247 * 2 1 3 6 6 C 1.34258 * 125.75539 * 75.31523 * 5 2 1 7 7 C 1.38050 * 107.41691 * 180.14506 * 6 5 2 8 8 C 1.47419 * 126.41550 * 179.87188 * 7 6 5 9 9 O 1.21608 * 120.00138 * 359.71393 * 8 7 6 10 10 N 1.34776 * 120.00150 * 179.71114 * 8 7 6 11 11 C 1.46502 * 120.00103 * 179.97438 * 10 8 7 12 12 C 1.53000 * 109.47446 * 180.02562 * 11 10 8 13 13 C 1.50694 * 109.47760 * 179.97438 * 12 11 10 14 14 C 1.29457 * 117.69284 * 94.99256 * 13 12 11 15 15 C 1.50319 * 123.65117 * 180.57773 * 14 13 12 16 16 N 1.47010 * 109.16396 * 349.28755 * 15 14 13 17 17 C 1.36939 * 121.37262 * 222.96294 * 16 15 14 18 18 H 1.08006 * 119.99321 * 155.96770 * 17 16 15 19 19 C 1.38810 * 120.00352 * 335.97266 * 17 16 15 20 20 N 1.31617 * 119.99875 * 344.52484 * 19 17 16 21 21 Si 1.86807 * 119.99988 * 164.52017 * 19 17 16 22 22 H 1.48495 * 109.46984 * 60.00138 * 21 19 17 23 23 H 1.48500 * 109.46904 * 180.02562 * 21 19 17 24 24 H 1.48499 * 109.47058 * 299.99897 * 21 19 17 25 25 C 1.47338 * 117.25069 * 42.95114 * 16 15 14 26 26 C 1.49964 * 117.69058 * 275.22400 * 13 12 11 27 27 C 1.41288 * 107.16887 * 359.60693 * 7 6 5 28 28 N 1.30445 * 108.02463 * 0.24283 * 27 7 6 29 29 H 1.08996 * 109.47303 * 299.99848 * 1 2 3 30 30 H 1.08997 * 109.47513 * 59.99963 * 1 2 3 31 31 H 1.09006 * 109.47171 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.46864 * 180.02562 * 3 2 1 33 33 H 1.09003 * 109.47156 * 299.99998 * 3 2 1 34 34 H 1.08996 * 109.46890 * 59.99900 * 3 2 1 35 35 H 1.09000 * 109.47698 * 300.00124 * 4 2 1 36 36 H 1.09003 * 109.47115 * 60.00079 * 4 2 1 37 37 H 1.09004 * 109.47651 * 179.97438 * 4 2 1 38 38 H 1.07997 * 126.29340 * 359.97438 * 6 5 2 39 39 H 0.96994 * 119.99684 * 0.02562 * 10 8 7 40 40 H 1.08994 * 109.47313 * 60.00010 * 11 10 8 41 41 H 1.09007 * 109.47033 * 300.00127 * 11 10 8 42 42 H 1.09006 * 109.47045 * 59.99189 * 12 11 10 43 43 H 1.09004 * 109.46703 * 300.00428 * 12 11 10 44 44 H 1.08003 * 118.17487 * 0.86945 * 14 13 12 45 45 H 1.09004 * 109.52258 * 109.19397 * 15 14 13 46 46 H 1.08999 * 109.52598 * 229.38084 * 15 14 13 47 47 H 0.97002 * 119.99820 * 180.02562 * 20 19 17 48 48 H 1.09002 * 109.78070 * 57.80258 * 25 16 15 49 49 H 1.09002 * 109.77840 * 178.61854 * 25 16 15 50 50 H 1.08995 * 109.43781 * 40.81758 * 26 13 12 51 51 H 1.09004 * 109.12988 * 281.42366 * 26 13 12 52 52 H 1.07996 * 125.99073 * 180.20309 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2492 5 7 2.0183 -0.6906 1.1961 6 6 2.0194 -2.0192 1.3894 7 6 2.5570 -2.2546 2.6389 8 6 2.7514 -3.5706 3.2742 9 8 2.4197 -4.5835 2.6886 10 7 3.2969 -3.6512 4.5040 11 6 3.4897 -4.9590 5.1356 12 6 4.1207 -4.7705 6.5166 13 6 4.3184 -6.1156 7.1665 14 6 5.4766 -6.6801 7.0408 15 6 5.8158 -8.0240 7.6226 16 7 4.7425 -8.4385 8.5377 17 6 5.0208 -9.0086 9.7512 18 1 4.2982 -8.9536 10.5521 19 6 6.2315 -9.6572 9.9521 20 7 6.9767 -9.9940 8.9208 21 14 6.8033 -10.0518 11.6862 22 1 5.8091 -10.9356 12.3461 23 1 8.1178 -10.7404 11.6292 24 1 6.9380 -8.7925 12.4615 25 6 3.3550 -8.2150 8.0953 26 6 3.1580 -6.7081 7.9089 27 6 2.8916 -0.9984 3.1923 28 7 2.5676 -0.0771 2.3276 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 3.1299 1.4424 -0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6766 1.9563 0.8900 35 1 1.6766 -1.7489 -1.2493 36 1 1.6766 -0.2074 -2.1392 37 1 3.1300 -0.7209 -1.2496 38 1 1.6625 -2.7664 0.6960 39 1 3.5612 -2.8433 4.9712 40 1 4.1469 -5.5686 4.5156 41 1 2.5257 -5.4567 5.2419 42 1 3.4631 -4.1609 7.1364 43 1 5.0846 -4.2725 6.4106 44 1 6.2433 -6.1542 6.4911 45 1 5.9123 -8.7548 6.8196 46 1 6.7558 -7.9571 8.1703 47 1 7.8226 -10.4476 9.0611 48 1 3.1818 -8.7293 7.1500 49 1 2.6626 -8.5868 8.8506 50 1 2.2402 -6.5312 7.3482 51 1 3.0779 -6.2314 8.8859 52 1 3.3369 -0.8303 4.1617 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001160573964.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:58:27 Heat of formation + Delta-G solvation = 45.490388 kcal Electronic energy + Delta-G solvation = -29344.020874 eV Core-core repulsion = 25344.865368 eV Total energy + Delta-G solvation = -3999.155507 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -42.50547 -40.35326 -39.39082 -37.69263 -36.67212 -35.06556 -33.18263 -31.84985 -31.61072 -31.30318 -29.87333 -28.39918 -28.32893 -27.12248 -24.99265 -24.29275 -23.48249 -23.18235 -22.41645 -21.02808 -20.45138 -19.43456 -18.58219 -17.60710 -17.07244 -16.98115 -16.75750 -16.63958 -16.15745 -15.75260 -15.70452 -15.41262 -15.24822 -15.01470 -14.90707 -14.69035 -14.48668 -14.24488 -13.83946 -13.79303 -13.35512 -13.24306 -13.23284 -13.17191 -13.13045 -12.80452 -12.76480 -12.74827 -12.56079 -12.40704 -12.31324 -12.23601 -12.18699 -11.88051 -11.80658 -11.64976 -11.21642 -10.88703 -10.66228 -10.55789 -10.15089 -9.63303 -9.45629 -8.73404 -7.86459 -5.28660 0.53318 1.19053 1.30142 1.46401 1.47556 1.50536 1.57130 2.36148 2.48732 2.52442 3.30028 3.33833 3.68874 3.71404 3.74973 3.83380 3.85014 4.00196 4.06475 4.16332 4.20185 4.33900 4.34060 4.56599 4.57394 4.61509 4.62844 4.68252 4.68907 4.73263 4.78505 4.81476 4.82876 4.89721 4.94719 5.01840 5.07333 5.14726 5.19701 5.20789 5.22050 5.26371 5.43547 5.45415 5.52191 5.52531 5.62020 5.91208 5.91655 6.31401 6.35132 6.52475 6.68695 7.14642 7.33186 7.84939 8.40033 9.21985 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.036188 B = 0.001525 C = 0.001519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 773.558843 B =18359.582678 C =18428.810243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.166 3.834 3 C -0.139 4.139 4 C -0.161 4.161 5 N -0.347 5.347 6 C 0.128 3.872 7 C -0.313 4.313 8 C 0.591 3.409 9 O -0.598 6.598 10 N -0.712 5.712 11 C 0.135 3.865 12 C -0.078 4.078 13 C -0.120 4.120 14 C -0.175 4.175 15 C 0.206 3.794 16 N -0.614 5.614 17 C -0.260 4.260 18 H 0.071 0.929 19 C -0.056 4.056 20 N -0.942 5.942 21 Si 0.972 3.028 22 H -0.275 1.275 23 H -0.294 1.294 24 H -0.278 1.278 25 C 0.135 3.865 26 C -0.087 4.087 27 C 0.084 3.916 28 N -0.314 5.314 29 H 0.054 0.946 30 H 0.105 0.895 31 H 0.064 0.936 32 H 0.054 0.946 33 H 0.099 0.901 34 H 0.060 0.940 35 H 0.070 0.930 36 H 0.108 0.892 37 H 0.058 0.942 38 H 0.194 0.806 39 H 0.415 0.585 40 H 0.048 0.952 41 H 0.059 0.941 42 H 0.094 0.906 43 H 0.084 0.916 44 H 0.113 0.887 45 H 0.001 0.999 46 H 0.055 0.945 47 H 0.249 0.751 48 H 0.017 0.983 49 H 0.059 0.941 50 H 0.086 0.914 51 H 0.069 0.931 52 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.453 27.114 -19.798 35.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.085 3.915 3 C -0.197 4.197 4 C -0.219 4.219 5 N -0.126 5.126 6 C -0.025 4.025 7 C -0.329 4.329 8 C 0.380 3.620 9 O -0.480 6.480 10 N -0.363 5.363 11 C 0.011 3.989 12 C -0.116 4.116 13 C -0.121 4.121 14 C -0.194 4.194 15 C 0.081 3.919 16 N -0.339 5.339 17 C -0.390 4.390 18 H 0.089 0.911 19 C -0.251 4.251 20 N -0.588 5.588 21 Si 0.800 3.200 22 H -0.201 1.201 23 H -0.221 1.221 24 H -0.204 1.204 25 C 0.010 3.990 26 C -0.126 4.126 27 C -0.104 4.104 28 N -0.133 5.133 29 H 0.073 0.927 30 H 0.124 0.876 31 H 0.083 0.917 32 H 0.073 0.927 33 H 0.118 0.882 34 H 0.079 0.921 35 H 0.089 0.911 36 H 0.127 0.873 37 H 0.077 0.923 38 H 0.211 0.789 39 H 0.252 0.748 40 H 0.067 0.933 41 H 0.077 0.923 42 H 0.112 0.888 43 H 0.103 0.897 44 H 0.131 0.869 45 H 0.019 0.981 46 H 0.073 0.927 47 H 0.058 0.942 48 H 0.035 0.965 49 H 0.078 0.922 50 H 0.104 0.896 51 H 0.087 0.913 52 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -12.620 27.681 -20.549 36.711 hybrid contribution 0.923 -1.554 1.280 2.215 sum -11.697 26.127 -19.269 34.507 Atomic orbital electron populations 1.22279 0.91462 1.03521 1.04258 1.21255 0.95496 0.94189 0.80578 1.21906 1.01490 0.92382 1.03911 1.22312 1.01928 1.01549 0.96077 1.49169 1.45012 1.03926 1.14453 1.23084 0.95456 0.87119 0.96814 1.20187 1.20261 0.93649 0.98758 1.17566 0.76017 0.87514 0.80864 1.90760 1.53802 1.38503 1.64912 1.45630 1.63356 1.10108 1.17215 1.21152 1.00322 0.84414 0.92963 1.20804 1.02422 0.94549 0.93808 1.20582 0.95210 0.96706 0.99569 1.22819 0.97995 0.97794 1.00827 1.19352 0.91878 0.89750 0.90883 1.44410 1.01030 1.70614 1.17807 1.19522 1.02424 1.27784 0.89221 0.91104 1.25799 0.99647 0.98742 1.00902 1.70196 1.14196 1.44233 1.30205 0.85270 0.77029 0.77853 0.79873 1.20051 1.22055 1.20382 1.21156 0.86091 0.94743 0.97055 1.20718 0.96385 0.95902 0.99574 1.24493 0.97251 0.88611 1.00038 1.77108 1.18596 1.22640 0.94979 0.92676 0.87595 0.91738 0.92691 0.88186 0.92134 0.91140 0.87319 0.92311 0.78903 0.74813 0.93316 0.92301 0.88780 0.89749 0.86914 0.98082 0.92683 0.94164 0.96507 0.92247 0.89571 0.91295 0.76670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.06 8.72 71.98 0.63 -0.43 16 2 C 0.17 1.52 1.23 3.60 0.00 1.53 16 3 C -0.14 -1.15 8.07 71.98 0.58 -0.57 16 4 C -0.16 -0.96 8.28 71.98 0.60 -0.37 16 5 N -0.35 -5.36 3.41 -306.13 -1.04 -6.40 16 6 C 0.13 2.26 10.39 84.28 0.88 3.14 16 7 C -0.31 -6.28 6.13 -20.15 -0.12 -6.40 16 8 C 0.59 14.86 7.81 86.66 0.68 15.54 16 9 O -0.60 -20.24 16.90 -4.06 -0.07 -20.30 16 10 N -0.71 -14.38 5.55 -466.37 -2.59 -16.97 16 11 C 0.14 3.32 5.66 86.38 0.49 3.81 16 12 C -0.08 -1.78 5.32 29.85 0.16 -1.62 16 13 C -0.12 -3.95 5.11 -15.14 -0.08 -4.03 16 14 C -0.18 -6.85 9.47 27.10 0.26 -6.60 16 15 C 0.21 10.55 5.23 85.42 0.45 10.99 16 16 N -0.61 -32.25 3.01 -703.36 -2.12 -34.36 16 17 C -0.26 -14.71 9.71 84.03 0.82 -13.90 16 18 H 0.07 3.86 7.88 -2.91 -0.02 3.84 16 19 C -0.06 -3.23 5.01 84.86 0.43 -2.80 16 20 N -0.94 -57.30 11.08 21.65 0.24 -57.06 16 21 Si 0.97 45.80 29.58 68.60 2.03 47.83 16 22 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 23 H -0.29 -13.93 7.11 99.48 0.71 -13.22 16 24 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 25 C 0.13 5.78 6.58 86.25 0.57 6.35 16 26 C -0.09 -2.93 5.94 29.65 0.18 -2.76 16 27 C 0.08 1.34 11.50 85.65 0.99 2.32 16 28 N -0.31 -5.66 11.56 -56.28 -0.65 -6.31 16 29 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 30 H 0.11 0.19 8.14 -2.39 -0.02 0.17 16 31 H 0.06 0.47 8.14 -2.38 -0.02 0.45 16 32 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 33 H 0.10 0.30 8.14 -2.39 -0.02 0.28 16 34 H 0.06 0.67 8.03 -2.39 -0.02 0.65 16 35 H 0.07 0.42 7.33 -2.39 -0.02 0.40 16 36 H 0.11 0.13 8.14 -2.39 -0.02 0.11 16 37 H 0.06 0.49 8.14 -2.38 -0.02 0.47 16 38 H 0.19 2.85 7.52 -2.91 -0.02 2.83 16 39 H 0.41 5.37 7.43 -92.71 -0.69 4.69 16 40 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 41 H 0.06 1.59 8.07 -2.38 -0.02 1.57 16 42 H 0.09 1.75 8.11 -2.38 -0.02 1.73 16 43 H 0.08 1.71 7.78 -2.39 -0.02 1.69 16 44 H 0.11 3.86 7.73 -2.91 -0.02 3.84 16 45 H 0.00 0.08 8.14 -2.38 -0.02 0.06 16 46 H 0.05 3.14 6.41 -2.39 -0.02 3.12 16 47 H 0.25 14.70 8.31 -92.71 -0.77 13.93 16 48 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 49 H 0.06 2.45 7.96 -2.39 -0.02 2.43 16 50 H 0.09 2.39 8.07 -2.39 -0.02 2.37 16 51 H 0.07 2.29 8.14 -2.38 -0.02 2.27 16 52 H 0.22 1.84 7.50 -2.91 -0.02 1.81 16 Total: -1.00 -77.90 420.27 3.50 -74.40 By element: Atomic # 1 Polarization: 14.77 SS G_CDS: 0.21 Total: 14.98 kcal Atomic # 6 Polarization: -3.28 SS G_CDS: 7.48 Total: 4.20 kcal Atomic # 7 Polarization: -114.95 SS G_CDS: -6.16 Total: -121.10 kcal Atomic # 8 Polarization: -20.24 SS G_CDS: -0.07 Total: -20.30 kcal Atomic # 14 Polarization: 45.80 SS G_CDS: 2.03 Total: 47.83 kcal Total: -77.90 3.50 -74.40 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160573964.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.892 kcal (2) G-P(sol) polarization free energy of solvation -77.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.402 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds