Wall clock time and date at job start Wed Apr 1 2020 04:25:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47411 * 2 1 4 4 C 1.53001 * 109.47286 * 239.99800 * 2 1 3 5 5 C 1.50708 * 109.47164 * 119.99872 * 2 1 3 6 6 O 1.20757 * 119.99526 * 359.97438 * 5 2 1 7 7 C 1.50690 * 120.00252 * 180.27637 * 5 2 1 8 8 N 1.46900 * 109.47411 * 174.34534 * 7 5 2 9 9 C 1.46846 * 111.00286 * 169.37060 * 8 7 5 10 10 C 1.53034 * 109.52598 * 185.83785 * 9 8 7 11 11 C 1.53112 * 109.27945 * 300.82563 * 10 9 8 12 12 N 1.46497 * 109.52346 * 177.55613 * 11 10 9 13 13 C 1.38826 * 120.00001 * 85.31550 * 12 11 10 14 14 C 1.39963 * 119.96937 * 0.02562 * 13 12 11 15 15 N 1.32126 * 120.31543 * 179.97438 * 14 13 12 16 16 C 1.31930 * 120.27744 * 359.97438 * 15 14 13 17 17 C 1.40687 * 119.93085 * 359.97438 * 16 15 14 18 18 C 1.41272 * 120.15647 * 180.02562 * 17 16 15 19 19 H 1.08005 * 119.99965 * 6.39290 * 18 17 16 20 20 C 1.40055 * 120.00090 * 186.39019 * 18 17 16 21 21 N 1.30733 * 119.99922 * 353.76618 * 20 18 17 22 22 Si 1.86795 * 120.00208 * 173.76947 * 20 18 17 23 23 H 1.48504 * 109.47356 * 59.99651 * 22 20 18 24 24 H 1.48492 * 109.47410 * 180.02562 * 22 20 18 25 25 H 1.48504 * 109.46953 * 300.00164 * 22 20 18 26 26 N 1.32244 * 119.97075 * 179.72319 * 13 12 11 27 27 C 1.53124 * 109.16050 * 57.65279 * 11 10 9 28 28 C 1.46843 * 110.99950 * 293.58616 * 8 7 5 29 29 H 1.08996 * 109.47196 * 300.00360 * 1 2 3 30 30 H 1.09000 * 109.46860 * 60.00530 * 1 2 3 31 31 H 1.08997 * 109.47257 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47380 * 179.97438 * 3 2 1 33 33 H 1.09008 * 109.46910 * 299.99881 * 3 2 1 34 34 H 1.08996 * 109.47234 * 59.99663 * 3 2 1 35 35 H 1.09004 * 109.47115 * 299.99792 * 4 2 1 36 36 H 1.08994 * 109.47059 * 59.99958 * 4 2 1 37 37 H 1.09004 * 109.47391 * 180.02562 * 4 2 1 38 38 H 1.09004 * 109.47183 * 294.34881 * 7 5 2 39 39 H 1.09001 * 109.47412 * 54.34441 * 7 5 2 40 40 H 1.08998 * 109.46377 * 305.85990 * 9 8 7 41 41 H 1.09007 * 109.46013 * 65.82254 * 9 8 7 42 42 H 1.08997 * 109.50491 * 180.88108 * 10 9 8 43 43 H 1.09003 * 109.49815 * 60.76756 * 10 9 8 44 44 H 1.08996 * 109.57687 * 297.71665 * 11 10 9 45 45 H 0.97003 * 120.00429 * 265.31973 * 12 11 10 46 46 H 1.07995 * 119.84313 * 359.95489 * 14 13 12 47 47 H 1.07993 * 120.03607 * 179.97438 * 16 15 14 48 48 H 0.96991 * 119.99821 * 179.97438 * 21 20 18 49 49 H 1.09005 * 109.49904 * 182.40287 * 27 11 10 50 50 H 1.09004 * 109.53639 * 62.30750 * 27 11 10 51 51 H 1.08998 * 109.46264 * 294.17539 * 28 8 7 52 52 H 1.08999 * 109.46263 * 54.13984 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0324 -0.7104 1.2305 6 8 1.2476 -1.1689 2.0256 7 6 3.5139 -0.8427 1.4722 8 7 3.7428 -1.4479 2.7910 9 6 5.1523 -1.8239 2.9600 10 6 5.3254 -2.5797 4.2794 11 6 4.8739 -1.6854 5.4373 12 7 4.9825 -2.4242 6.6976 13 6 6.1909 -2.4589 7.3800 14 6 7.3051 -1.7874 6.8635 15 7 8.4584 -1.8156 7.5075 16 6 8.5698 -2.4767 8.6438 17 6 7.4567 -3.1547 9.1735 18 6 7.5705 -3.8636 10.3901 19 1 8.4809 -3.8019 10.9680 20 6 6.5028 -4.6465 10.8470 21 7 5.3593 -4.6260 10.2136 22 14 6.7126 -5.7199 12.3612 23 1 7.0578 -4.8683 13.5278 24 1 5.4452 -6.4440 12.6342 25 1 7.8019 -6.7013 12.1253 26 7 6.2868 -3.1215 8.5205 27 6 3.4178 -1.2686 5.2122 28 6 3.3000 -0.5507 3.8658 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 3.1300 1.4424 0.0005 33 1 1.6767 1.9563 -0.8901 34 1 1.6767 1.9563 0.8899 35 1 1.6767 -1.7490 -1.2492 36 1 1.6767 -0.2075 -2.1392 37 1 3.1301 -0.7217 -1.2490 38 1 3.9528 -1.4755 0.7008 39 1 3.9768 0.1436 1.4398 40 1 5.4594 -2.4631 2.1322 41 1 5.7689 -0.9251 2.9727 42 1 6.3742 -2.8449 4.4119 43 1 4.7197 -3.4858 4.2618 44 1 5.5045 -0.7973 5.4801 45 1 4.2100 -2.8892 7.0554 46 1 7.2217 -1.2440 5.9340 47 1 9.5145 -2.4974 9.1667 48 1 4.6201 -5.1685 10.5298 49 1 3.1039 -0.5970 6.0114 50 1 2.7816 -2.1537 5.2097 51 1 3.9252 0.3421 3.8743 52 1 2.2619 -0.2653 3.6960 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001161124990.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:25:39 Heat of formation + Delta-G solvation = 4.610422 kcal Electronic energy + Delta-G solvation = -30497.861045 eV Core-core repulsion = 26496.932850 eV Total energy + Delta-G solvation = -4000.928195 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -40.57291 -39.19824 -38.36017 -36.08160 -35.42838 -33.86826 -32.38756 -31.09674 -30.82251 -29.06537 -27.88776 -27.82074 -26.79929 -25.82450 -23.63855 -23.19603 -22.26148 -22.12225 -20.85466 -19.73043 -18.59308 -17.48461 -16.76239 -16.47873 -16.09454 -15.68809 -15.49640 -15.21526 -14.87309 -14.80509 -14.66292 -14.31586 -14.12047 -13.99471 -13.56314 -13.48921 -13.27650 -12.86586 -12.75909 -12.67747 -12.65180 -12.43054 -12.17318 -12.09946 -11.93703 -11.55533 -11.47321 -11.37692 -11.33892 -11.31631 -11.13013 -11.05673 -10.82263 -10.61754 -10.39903 -10.29692 -9.78138 -9.56653 -9.55184 -9.34568 -8.45011 -8.31655 -7.34650 -6.65815 -6.41120 -4.62599 1.75657 2.74939 3.05719 3.07704 3.15847 3.31586 3.34796 3.89794 3.93113 4.05974 4.26690 4.39999 4.52702 4.74300 4.85406 4.86987 4.96915 5.04287 5.08442 5.10385 5.18812 5.24474 5.26917 5.28328 5.39283 5.41613 5.43152 5.49470 5.58304 5.63153 5.69731 5.71465 5.76701 5.83196 5.87193 5.92685 6.06134 6.11483 6.15626 6.31880 6.37993 6.50683 6.62350 6.84077 6.84379 6.95288 7.07609 7.17999 7.36301 7.64657 8.00449 8.10270 8.50132 8.59895 8.90816 9.45529 10.05055 10.22533 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.023602 B = 0.001991 C = 0.001895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1186.052310 B =14057.462758 C =14770.727586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.116 4.116 3 C -0.139 4.139 4 C -0.139 4.139 5 C 0.362 3.638 6 O -0.426 6.426 7 C 0.004 3.996 8 N -0.527 5.527 9 C 0.060 3.940 10 C -0.131 4.131 11 C 0.165 3.835 12 N -0.726 5.726 13 C 0.375 3.625 14 C -0.171 4.171 15 N -0.408 5.408 16 C -0.110 4.110 17 C 0.246 3.754 18 C -0.417 4.417 19 H 0.089 0.911 20 C 0.068 3.932 21 N -0.709 5.709 22 Si 0.911 3.089 23 H -0.264 1.264 24 H -0.277 1.277 25 H -0.263 1.263 26 N -0.509 5.509 27 C -0.120 4.120 28 C 0.059 3.941 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.061 0.939 32 H 0.063 0.937 33 H 0.067 0.933 34 H 0.059 0.941 35 H 0.060 0.940 36 H 0.067 0.933 37 H 0.063 0.937 38 H 0.107 0.893 39 H 0.067 0.933 40 H 0.075 0.925 41 H 0.036 0.964 42 H 0.075 0.925 43 H 0.072 0.928 44 H 0.073 0.927 45 H 0.396 0.604 46 H 0.119 0.881 47 H 0.129 0.871 48 H 0.274 0.726 49 H 0.072 0.928 50 H 0.077 0.923 51 H 0.032 0.968 52 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.974 8.176 -20.615 23.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.117 4.117 3 C -0.197 4.197 4 C -0.196 4.196 5 C 0.234 3.766 6 O -0.296 6.296 7 C -0.125 4.125 8 N -0.251 5.251 9 C -0.068 4.068 10 C -0.170 4.170 11 C 0.058 3.942 12 N -0.361 5.361 13 C 0.132 3.868 14 C -0.332 4.332 15 N -0.120 5.120 16 C -0.280 4.280 17 C 0.118 3.882 18 C -0.450 4.450 19 H 0.107 0.893 20 C -0.159 4.159 21 N -0.330 5.330 22 Si 0.734 3.266 23 H -0.188 1.188 24 H -0.202 1.202 25 H -0.188 1.188 26 N -0.236 5.236 27 C -0.158 4.158 28 C -0.069 4.069 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.082 0.918 33 H 0.086 0.914 34 H 0.078 0.922 35 H 0.079 0.921 36 H 0.086 0.914 37 H 0.082 0.918 38 H 0.125 0.875 39 H 0.084 0.916 40 H 0.093 0.907 41 H 0.054 0.946 42 H 0.093 0.907 43 H 0.091 0.909 44 H 0.091 0.909 45 H 0.231 0.769 46 H 0.136 0.864 47 H 0.146 0.854 48 H 0.086 0.914 49 H 0.091 0.909 50 H 0.095 0.905 51 H 0.050 0.950 52 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -9.853 7.549 -20.305 23.798 hybrid contribution 0.299 0.041 0.603 0.674 sum -9.554 7.590 -19.702 23.174 Atomic orbital electron populations 1.21710 0.92536 1.02754 1.02078 1.21208 0.97865 0.97068 0.95555 1.21852 1.01450 0.93531 1.02839 1.21832 1.01454 1.00500 0.95810 1.24533 0.90788 0.75744 0.85485 1.90394 1.58579 1.36591 1.44000 1.22526 0.95958 1.00192 0.93811 1.61765 1.20285 1.42540 1.00549 1.22113 0.86837 0.98964 0.98869 1.22113 1.02482 0.99545 0.92898 1.20718 0.95763 0.94145 0.83568 1.44187 1.10555 1.58291 1.23044 1.19526 0.85949 0.90813 0.90523 1.21915 0.90716 1.15557 1.05053 1.67491 1.24452 1.13293 1.06726 1.22877 0.99630 1.08310 0.97204 1.19087 0.86801 0.89666 0.92665 1.19578 1.00378 1.21880 1.03145 0.89270 1.26129 0.94634 0.96980 0.98136 1.70100 1.01072 1.28141 1.33693 0.86335 0.78694 0.80179 0.81348 1.18809 1.20235 1.18792 1.69054 1.25094 1.23085 1.06332 1.21797 0.96667 1.01488 0.95844 1.22117 1.00912 0.93113 0.90756 0.92105 0.92080 0.92017 0.91799 0.91366 0.92196 0.92067 0.91438 0.91794 0.87469 0.91573 0.90660 0.94582 0.90656 0.90889 0.90942 0.76921 0.86375 0.85382 0.91445 0.90949 0.90469 0.94991 0.89920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.94 7.76 37.16 0.29 -0.65 16 2 C -0.12 -0.76 0.87 -155.66 -0.14 -0.89 16 3 C -0.14 -0.71 8.24 37.16 0.31 -0.40 16 4 C -0.14 -0.69 8.28 37.16 0.31 -0.38 16 5 C 0.36 3.37 5.52 -29.04 -0.16 3.21 16 6 O -0.43 -5.55 14.29 6.00 0.09 -5.46 16 7 C 0.00 0.03 4.72 -4.98 -0.02 0.01 16 8 N -0.53 -6.03 4.35 -236.12 -1.03 -7.06 16 9 C 0.06 0.69 5.46 -3.84 -0.02 0.67 16 10 C -0.13 -1.89 5.62 -26.66 -0.15 -2.04 16 11 C 0.17 2.59 2.20 -67.81 -0.15 2.44 16 12 N -0.73 -14.45 5.24 -53.67 -0.28 -14.73 16 13 C 0.38 9.19 7.65 -155.01 -1.19 8.01 16 14 C -0.17 -4.12 10.07 -16.78 -0.17 -4.29 16 15 N -0.41 -10.52 10.47 -12.11 -0.13 -10.64 16 16 C -0.11 -2.89 10.97 -16.59 -0.18 -3.08 16 17 C 0.25 6.84 6.54 -84.83 -0.55 6.29 16 18 C -0.42 -11.04 9.15 -37.75 -0.35 -11.39 16 19 H 0.09 2.17 7.86 -52.48 -0.41 1.76 16 20 C 0.07 1.70 5.49 -17.34 -0.10 1.60 16 21 N -0.71 -18.59 11.51 55.55 0.64 -17.95 16 22 Si 0.91 18.32 29.56 -169.99 -5.03 13.30 16 23 H -0.26 -5.21 7.11 56.52 0.40 -4.81 16 24 H -0.28 -5.46 7.11 56.52 0.40 -5.06 16 25 H -0.26 -5.24 7.11 56.52 0.40 -4.84 16 26 N -0.51 -14.07 8.10 -10.14 -0.08 -14.15 16 27 C -0.12 -1.63 5.57 -26.65 -0.15 -1.78 16 28 C 0.06 0.71 5.12 -3.84 -0.02 0.69 16 29 H 0.06 0.48 8.10 -51.93 -0.42 0.06 16 30 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 31 H 0.06 0.50 8.10 -51.93 -0.42 0.07 16 32 H 0.06 0.27 7.15 -51.93 -0.37 -0.10 16 33 H 0.07 0.27 8.14 -51.92 -0.42 -0.15 16 34 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 36 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 37 H 0.06 0.26 7.43 -51.93 -0.39 -0.13 16 38 H 0.11 0.74 7.47 -51.93 -0.39 0.35 16 39 H 0.07 0.46 7.11 -51.93 -0.37 0.09 16 40 H 0.07 0.76 8.01 -51.93 -0.42 0.34 16 41 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.07 1.21 7.71 -51.93 -0.40 0.81 16 43 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 44 H 0.07 1.19 6.45 -51.93 -0.34 0.85 16 45 H 0.40 7.95 8.73 -40.82 -0.36 7.60 16 46 H 0.12 2.53 6.07 -52.49 -0.32 2.22 16 47 H 0.13 3.07 8.06 -52.49 -0.42 2.65 16 48 H 0.27 6.54 8.29 -40.82 -0.34 6.20 16 49 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 50 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 51 H 0.03 0.36 8.14 -51.93 -0.42 -0.07 16 52 H 0.08 1.02 6.03 -51.93 -0.31 0.71 16 LS Contribution 408.06 15.07 6.15 6.15 Total: -1.00 -31.67 408.06 -10.80 -42.46 By element: Atomic # 1 Polarization: 18.76 SS G_CDS: -8.69 Total: 10.07 kcal Atomic # 6 Polarization: 0.45 SS G_CDS: -2.44 Total: -1.99 kcal Atomic # 7 Polarization: -63.65 SS G_CDS: -0.88 Total: -64.53 kcal Atomic # 8 Polarization: -5.55 SS G_CDS: 0.09 Total: -5.46 kcal Atomic # 14 Polarization: 18.32 SS G_CDS: -5.03 Total: 13.30 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -31.67 -10.80 -42.46 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161124990.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.075 kcal (2) G-P(sol) polarization free energy of solvation -31.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.465 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds