Wall clock time and date at job start Wed Apr 1 2020 05:39:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47396 * 2 1 4 4 C 1.53006 * 109.47292 * 239.99890 * 2 1 3 5 5 N 1.46503 * 109.47129 * 119.99989 * 2 1 3 6 6 C 1.34779 * 120.00057 * 59.99854 * 5 2 1 7 7 O 1.21593 * 119.99523 * 0.02562 * 6 5 2 8 8 C 1.47537 * 119.99699 * 179.97438 * 6 5 2 9 9 C 1.40359 * 120.47043 * 179.97438 * 8 6 5 10 10 C 1.36852 * 118.48853 * 179.76930 * 9 8 6 11 11 C 1.39402 * 119.38308 * 0.50079 * 10 9 8 12 12 N 1.38455 * 119.54144 * 179.76573 * 11 10 9 13 13 C 1.46950 * 111.00147 * 303.52552 * 12 11 10 14 14 C 1.53053 * 109.36707 * 176.81195 * 13 12 11 15 15 N 1.46950 * 109.36273 * 58.39878 * 14 13 12 16 16 C 1.46903 * 110.99784 * 176.81275 * 15 14 13 17 17 C 1.50695 * 109.47083 * 58.99571 * 16 15 14 18 18 H 1.08005 * 120.00280 * 4.98507 * 17 16 15 19 19 C 1.37877 * 120.00219 * 184.99143 * 17 16 15 20 20 N 1.31515 * 120.00451 * 180.02562 * 19 17 16 21 21 Si 1.86800 * 119.99797 * 359.97438 * 19 17 16 22 22 H 1.48504 * 109.47046 * 90.00262 * 21 19 17 23 23 H 1.48501 * 109.47343 * 210.00446 * 21 19 17 24 24 H 1.48501 * 109.47392 * 330.00928 * 21 19 17 25 25 C 1.46950 * 110.88195 * 300.68251 * 15 14 13 26 26 C 1.46960 * 110.99845 * 179.72468 * 12 11 10 27 27 N 1.32601 * 120.91733 * 359.48779 * 11 10 9 28 28 C 1.31681 * 121.63921 * 0.25803 * 27 11 10 29 29 H 1.09001 * 109.47310 * 300.00148 * 1 2 3 30 30 H 1.09007 * 109.47033 * 59.99982 * 1 2 3 31 31 H 1.08995 * 109.47487 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47449 * 180.02562 * 3 2 1 33 33 H 1.09007 * 109.47044 * 300.00011 * 3 2 1 34 34 H 1.09001 * 109.47012 * 59.99670 * 3 2 1 35 35 H 1.08995 * 109.46720 * 300.00305 * 4 2 1 36 36 H 1.09001 * 109.46705 * 59.99725 * 4 2 1 37 37 H 1.08994 * 109.46683 * 180.02562 * 4 2 1 38 38 H 0.97007 * 119.99750 * 239.99748 * 5 2 1 39 39 H 1.07997 * 120.75092 * 0.04342 * 9 8 6 40 40 H 1.08002 * 120.30872 * 180.26119 * 10 9 8 41 41 H 1.09000 * 109.49210 * 296.78035 * 13 12 11 42 42 H 1.09003 * 109.48899 * 56.84153 * 13 12 11 43 43 H 1.08997 * 109.48487 * 298.43253 * 14 13 12 44 44 H 1.08995 * 109.48873 * 178.36974 * 14 13 12 45 45 H 1.09003 * 109.47171 * 178.99327 * 16 15 14 46 46 H 1.09001 * 109.47537 * 298.99104 * 16 15 14 47 47 H 0.97003 * 120.00238 * 180.02562 * 20 19 17 48 48 H 1.09000 * 109.49210 * 299.35167 * 25 15 14 49 49 H 1.09003 * 109.48899 * 179.29049 * 25 15 14 50 50 H 1.08993 * 109.48736 * 303.15476 * 26 12 11 51 51 H 1.08998 * 109.48681 * 63.20419 * 26 12 11 52 52 H 1.08002 * 119.73949 * 179.97438 * 28 27 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 7 2.0183 -0.6906 1.1962 6 6 1.6927 -1.9810 1.4095 7 8 0.9940 -2.5720 0.6089 8 6 2.1850 -2.6766 2.6139 9 6 1.8515 -4.0200 2.8462 10 6 2.3342 -4.6268 3.9739 11 6 3.1276 -3.8965 4.8573 12 7 3.6136 -4.5057 6.0017 13 6 2.5177 -5.0568 6.8109 14 6 3.0999 -5.7887 8.0225 15 7 3.9147 -4.8541 8.8111 16 6 4.4303 -5.5005 10.0253 17 6 5.2644 -6.6958 9.6425 18 1 5.4649 -6.9034 8.6017 19 6 5.7715 -7.5245 10.6208 20 7 6.4998 -8.5673 10.2867 21 14 5.4253 -7.1651 12.4209 22 1 4.1765 -7.8556 12.8322 23 1 6.5568 -7.6531 13.2497 24 1 5.2671 -5.7009 12.6119 25 6 5.0105 -4.3030 8.0019 26 6 4.4284 -3.5710 6.7904 27 7 3.4278 -2.6280 4.6141 28 6 2.9883 -2.0081 3.5387 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 3.1300 1.4425 -0.0005 33 1 1.6767 1.9564 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6766 -1.7489 -1.2492 36 1 1.6766 -0.2075 -2.1392 37 1 3.1300 -0.7216 -1.2489 38 1 2.5760 -0.2192 1.8347 39 1 1.2319 -4.5638 2.1485 40 1 2.0994 -5.6608 4.1794 41 1 1.8734 -4.2460 7.1510 42 1 1.9366 -5.7552 6.2087 43 1 3.7224 -6.6164 7.6826 44 1 2.2879 -6.1734 8.6395 45 1 5.0444 -4.7920 10.5813 46 1 3.5957 -5.8240 10.6473 47 1 6.8563 -9.1505 10.9750 48 1 5.6548 -5.1138 7.6618 49 1 5.5917 -3.6046 8.6041 50 1 5.2403 -3.1864 6.1732 51 1 3.8060 -2.7432 7.1299 52 1 3.2513 -0.9741 3.3713 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001165056030.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:39:22 Heat of formation + Delta-G solvation = 22.070246 kcal Electronic energy + Delta-G solvation = -30282.940071 eV Core-core repulsion = 26282.768990 eV Total energy + Delta-G solvation = -4000.171080 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.13432 -40.11824 -38.41783 -36.77260 -35.40509 -32.85358 -32.78803 -32.32527 -30.57051 -30.29927 -28.13326 -27.78857 -27.58092 -25.51133 -24.39399 -23.51358 -22.50090 -21.69502 -21.08962 -19.91562 -19.29129 -18.37649 -17.34245 -16.94012 -16.71332 -15.85651 -15.45201 -15.32281 -15.03846 -14.70172 -14.43149 -14.40319 -14.33694 -14.21312 -13.96388 -13.80769 -13.45008 -13.17382 -12.95227 -12.80094 -12.56060 -12.47204 -12.45469 -12.37322 -12.12229 -11.97796 -11.53079 -11.43147 -11.35779 -11.10893 -10.86451 -10.69821 -10.43762 -10.27417 -10.18237 -10.09039 -10.03401 -9.80775 -9.54896 -9.50153 -9.41548 -8.63615 -8.12518 -7.31838 -6.14345 -4.14957 0.52434 1.14479 2.65403 2.79913 3.24257 3.32607 3.35843 3.45366 3.76112 4.14993 4.33510 4.35640 4.52800 4.58125 4.64704 4.67520 4.79928 4.90472 4.91659 5.11694 5.18157 5.22123 5.23136 5.35556 5.39267 5.39726 5.43903 5.45992 5.57377 5.60142 5.61886 5.67224 5.75317 5.87219 5.88353 5.94854 6.01496 6.02812 6.14203 6.21010 6.26852 6.44369 6.60829 6.73352 6.75115 6.90788 7.00253 7.15583 7.21672 7.48903 7.78550 7.93850 7.96738 7.97115 8.39431 8.88265 9.47931 10.98350 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.033287 B = 0.001827 C = 0.001796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.957636 B =15324.453463 C =15589.420080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.169 3.831 3 C -0.156 4.156 4 C -0.164 4.164 5 N -0.723 5.723 6 C 0.575 3.425 7 O -0.537 6.537 8 C -0.238 4.238 9 C 0.007 3.993 10 C -0.198 4.198 11 C 0.352 3.648 12 N -0.473 5.473 13 C 0.065 3.935 14 C 0.060 3.940 15 N -0.537 5.537 16 C 0.155 3.845 17 C -0.553 4.553 18 H 0.077 0.923 19 C 0.073 3.927 20 N -0.897 5.897 21 Si 0.879 3.121 22 H -0.276 1.276 23 H -0.287 1.287 24 H -0.264 1.264 25 C 0.056 3.944 26 C 0.072 3.928 27 N -0.525 5.525 28 C 0.168 3.832 29 H 0.054 0.946 30 H 0.062 0.938 31 H 0.079 0.921 32 H 0.063 0.937 33 H 0.073 0.927 34 H 0.063 0.937 35 H 0.079 0.921 36 H 0.062 0.938 37 H 0.054 0.946 38 H 0.398 0.602 39 H 0.145 0.855 40 H 0.144 0.856 41 H 0.051 0.949 42 H 0.082 0.918 43 H 0.061 0.939 44 H 0.078 0.922 45 H 0.029 0.971 46 H 0.027 0.973 47 H 0.264 0.736 48 H 0.054 0.946 49 H 0.075 0.925 50 H 0.083 0.917 51 H 0.055 0.945 52 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.603 18.339 -19.320 28.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.084 3.916 3 C -0.214 4.214 4 C -0.222 4.222 5 N -0.376 5.376 6 C 0.363 3.637 7 O -0.415 6.415 8 C -0.245 4.245 9 C -0.019 4.019 10 C -0.221 4.221 11 C 0.119 3.881 12 N -0.188 5.188 13 C -0.060 4.060 14 C -0.069 4.069 15 N -0.261 5.261 16 C 0.028 3.972 17 C -0.592 4.592 18 H 0.095 0.905 19 C -0.130 4.130 20 N -0.535 5.535 21 Si 0.706 3.294 22 H -0.202 1.202 23 H -0.213 1.213 24 H -0.189 1.189 25 C -0.073 4.073 26 C -0.055 4.055 27 N -0.240 5.240 28 C 0.007 3.993 29 H 0.073 0.927 30 H 0.081 0.919 31 H 0.098 0.902 32 H 0.082 0.918 33 H 0.092 0.908 34 H 0.082 0.918 35 H 0.098 0.902 36 H 0.081 0.919 37 H 0.073 0.927 38 H 0.233 0.767 39 H 0.163 0.837 40 H 0.162 0.838 41 H 0.070 0.930 42 H 0.101 0.899 43 H 0.079 0.921 44 H 0.096 0.904 45 H 0.047 0.953 46 H 0.045 0.955 47 H 0.074 0.926 48 H 0.073 0.927 49 H 0.094 0.906 50 H 0.101 0.899 51 H 0.074 0.926 52 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -10.456 18.166 -19.113 28.366 hybrid contribution 0.003 -0.338 0.662 0.743 sum -10.453 17.828 -18.450 27.704 Atomic orbital electron populations 1.22230 0.94138 1.04134 1.01704 1.20343 0.94509 0.91728 0.85031 1.22101 1.01711 0.94429 1.03142 1.22232 1.00989 1.02845 0.96159 1.46088 1.54153 1.11963 1.25413 1.17949 0.79463 0.81245 0.85044 1.90707 1.38027 1.66245 1.46512 1.20684 1.07775 0.96934 0.99100 1.21215 0.93380 0.92545 0.94780 1.21353 1.02683 1.02082 0.95967 1.20225 0.87676 0.87350 0.92871 1.58937 1.20756 1.32892 1.06190 1.22480 0.90486 0.98887 0.94178 1.22012 0.97886 0.94728 0.92274 1.62653 1.21446 1.34839 1.07160 1.20159 0.94788 0.93868 0.88340 1.21675 1.32486 1.09395 0.95618 0.90545 1.24976 0.94364 0.94594 0.99101 1.69928 1.34657 1.15205 1.33709 0.86797 0.78042 0.79303 0.85233 1.20211 1.21307 1.18898 1.22086 0.93737 0.98804 0.92663 1.22184 0.96747 0.92809 0.93736 1.67752 1.26145 1.08761 1.21335 1.22674 0.90089 0.98812 0.87698 0.92704 0.91904 0.90227 0.91828 0.90763 0.91840 0.90222 0.91905 0.92680 0.76671 0.83713 0.83836 0.93031 0.89944 0.92091 0.90414 0.95316 0.95540 0.92640 0.92727 0.90638 0.89891 0.92644 0.82942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.24 8.40 37.16 0.31 -0.92 16 2 C 0.17 1.16 1.06 -131.82 -0.14 1.03 16 3 C -0.16 -0.69 8.59 37.16 0.32 -0.37 16 4 C -0.16 -1.25 8.40 37.16 0.31 -0.94 16 5 N -0.72 -5.43 5.06 -48.63 -0.25 -5.67 16 6 C 0.57 6.02 7.19 -12.47 -0.09 5.93 16 7 O -0.54 -7.02 12.61 5.28 0.07 -6.95 16 8 C -0.24 -2.55 5.89 -104.82 -0.62 -3.16 16 9 C 0.01 0.08 9.65 -39.29 -0.38 -0.30 16 10 C -0.20 -2.36 9.14 -39.65 -0.36 -2.73 16 11 C 0.35 4.86 6.39 -155.28 -0.99 3.87 16 12 N -0.47 -7.27 4.72 -173.08 -0.82 -8.09 16 13 C 0.06 0.95 5.36 -3.77 -0.02 0.93 16 14 C 0.06 1.09 5.24 -3.77 -0.02 1.07 16 15 N -0.54 -10.68 4.92 -235.92 -1.16 -11.84 16 16 C 0.16 3.58 4.21 -4.98 -0.02 3.56 16 17 C -0.55 -14.91 8.21 -34.44 -0.28 -15.19 16 18 H 0.08 2.26 6.07 -52.48 -0.32 1.94 16 19 C 0.07 2.03 5.47 -17.82 -0.10 1.94 16 20 N -0.90 -26.86 13.96 55.43 0.77 -26.09 16 21 Si 0.88 20.95 27.37 -169.99 -4.65 16.29 16 22 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 23 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 24 H -0.26 -6.06 6.69 56.52 0.38 -5.68 16 25 C 0.06 1.04 5.32 -3.77 -0.02 1.02 16 26 C 0.07 1.14 4.78 -3.77 -0.02 1.12 16 27 N -0.53 -6.88 8.66 -12.14 -0.11 -6.98 16 28 C 0.17 1.73 10.71 -17.13 -0.18 1.54 16 29 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.08 0.81 6.16 -51.93 -0.32 0.49 16 32 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 33 H 0.07 0.28 8.14 -51.93 -0.42 -0.15 16 34 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 35 H 0.08 0.81 6.16 -51.93 -0.32 0.49 16 36 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 37 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.40 2.09 6.52 -40.82 -0.27 1.82 16 39 H 0.15 1.47 7.73 -52.49 -0.41 1.07 16 40 H 0.14 1.53 7.17 -52.49 -0.38 1.15 16 41 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 42 H 0.08 1.03 6.77 -51.93 -0.35 0.67 16 43 H 0.06 1.28 6.62 -51.93 -0.34 0.94 16 44 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 45 H 0.03 0.68 7.52 -51.93 -0.39 0.29 16 46 H 0.03 0.61 7.30 -51.93 -0.38 0.23 16 47 H 0.26 7.42 8.31 -40.82 -0.34 7.09 16 48 H 0.05 1.17 6.78 -51.93 -0.35 0.82 16 49 H 0.08 1.35 8.12 -51.93 -0.42 0.93 16 50 H 0.08 1.27 7.81 -51.93 -0.41 0.86 16 51 H 0.06 0.88 8.04 -51.93 -0.42 0.46 16 52 H 0.15 1.03 6.41 -52.49 -0.34 0.69 16 LS Contribution 398.95 15.07 6.01 6.01 Total: -1.00 -31.77 398.95 -10.79 -42.57 By element: Atomic # 1 Polarization: 10.73 SS G_CDS: -8.37 Total: 2.37 kcal Atomic # 6 Polarization: 0.69 SS G_CDS: -2.30 Total: -1.61 kcal Atomic # 7 Polarization: -57.12 SS G_CDS: -1.55 Total: -58.68 kcal Atomic # 8 Polarization: -7.02 SS G_CDS: 0.07 Total: -6.95 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -4.65 Total: 16.29 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -31.77 -10.79 -42.57 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165056030.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.638 kcal (2) G-P(sol) polarization free energy of solvation -31.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.568 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds