Wall clock time and date at job start Wed Apr 1 2020 05:39:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47396 * 2 1 4 4 C 1.53006 * 109.47292 * 239.99890 * 2 1 3 5 5 N 1.46503 * 109.47129 * 119.99989 * 2 1 3 6 6 C 1.34779 * 120.00057 * 59.99854 * 5 2 1 7 7 O 1.21593 * 119.99523 * 0.02562 * 6 5 2 8 8 C 1.47537 * 119.99699 * 179.97438 * 6 5 2 9 9 C 1.40359 * 120.47043 * 179.97438 * 8 6 5 10 10 C 1.36852 * 118.48853 * 179.76930 * 9 8 6 11 11 C 1.39402 * 119.38308 * 0.50079 * 10 9 8 12 12 N 1.38455 * 119.54144 * 179.76573 * 11 10 9 13 13 C 1.46950 * 111.00147 * 303.52552 * 12 11 10 14 14 C 1.53053 * 109.36707 * 176.81195 * 13 12 11 15 15 N 1.46950 * 109.36273 * 58.39878 * 14 13 12 16 16 C 1.46903 * 110.99784 * 176.81275 * 15 14 13 17 17 C 1.50695 * 109.47083 * 58.99571 * 16 15 14 18 18 H 1.08005 * 120.00280 * 4.98507 * 17 16 15 19 19 C 1.37877 * 120.00219 * 184.99143 * 17 16 15 20 20 N 1.31515 * 120.00451 * 180.02562 * 19 17 16 21 21 Si 1.86800 * 119.99797 * 359.97438 * 19 17 16 22 22 H 1.48504 * 109.47046 * 90.00262 * 21 19 17 23 23 H 1.48501 * 109.47343 * 210.00446 * 21 19 17 24 24 H 1.48501 * 109.47392 * 330.00928 * 21 19 17 25 25 C 1.46950 * 110.88195 * 300.68251 * 15 14 13 26 26 C 1.46960 * 110.99845 * 179.72468 * 12 11 10 27 27 N 1.32601 * 120.91733 * 359.48779 * 11 10 9 28 28 C 1.31681 * 121.63921 * 0.25803 * 27 11 10 29 29 H 1.09001 * 109.47310 * 300.00148 * 1 2 3 30 30 H 1.09007 * 109.47033 * 59.99982 * 1 2 3 31 31 H 1.08995 * 109.47487 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47449 * 180.02562 * 3 2 1 33 33 H 1.09007 * 109.47044 * 300.00011 * 3 2 1 34 34 H 1.09001 * 109.47012 * 59.99670 * 3 2 1 35 35 H 1.08995 * 109.46720 * 300.00305 * 4 2 1 36 36 H 1.09001 * 109.46705 * 59.99725 * 4 2 1 37 37 H 1.08994 * 109.46683 * 180.02562 * 4 2 1 38 38 H 0.97007 * 119.99750 * 239.99748 * 5 2 1 39 39 H 1.07997 * 120.75092 * 0.04342 * 9 8 6 40 40 H 1.08002 * 120.30872 * 180.26119 * 10 9 8 41 41 H 1.09000 * 109.49210 * 296.78035 * 13 12 11 42 42 H 1.09003 * 109.48899 * 56.84153 * 13 12 11 43 43 H 1.08997 * 109.48487 * 298.43253 * 14 13 12 44 44 H 1.08995 * 109.48873 * 178.36974 * 14 13 12 45 45 H 1.09003 * 109.47171 * 178.99327 * 16 15 14 46 46 H 1.09001 * 109.47537 * 298.99104 * 16 15 14 47 47 H 0.97003 * 120.00238 * 180.02562 * 20 19 17 48 48 H 1.09000 * 109.49210 * 299.35167 * 25 15 14 49 49 H 1.09003 * 109.48899 * 179.29049 * 25 15 14 50 50 H 1.08993 * 109.48736 * 303.15476 * 26 12 11 51 51 H 1.08998 * 109.48681 * 63.20419 * 26 12 11 52 52 H 1.08002 * 119.73949 * 179.97438 * 28 27 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 7 2.0183 -0.6906 1.1962 6 6 1.6927 -1.9810 1.4095 7 8 0.9940 -2.5720 0.6089 8 6 2.1850 -2.6766 2.6139 9 6 1.8515 -4.0200 2.8462 10 6 2.3342 -4.6268 3.9739 11 6 3.1276 -3.8965 4.8573 12 7 3.6136 -4.5057 6.0017 13 6 2.5177 -5.0568 6.8109 14 6 3.0999 -5.7887 8.0225 15 7 3.9147 -4.8541 8.8111 16 6 4.4303 -5.5005 10.0253 17 6 5.2644 -6.6958 9.6425 18 1 5.4649 -6.9034 8.6017 19 6 5.7715 -7.5245 10.6208 20 7 6.4998 -8.5673 10.2867 21 14 5.4253 -7.1651 12.4209 22 1 4.1765 -7.8556 12.8322 23 1 6.5568 -7.6531 13.2497 24 1 5.2671 -5.7009 12.6119 25 6 5.0105 -4.3030 8.0019 26 6 4.4284 -3.5710 6.7904 27 7 3.4278 -2.6280 4.6141 28 6 2.9883 -2.0081 3.5387 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 3.1300 1.4425 -0.0005 33 1 1.6767 1.9564 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6766 -1.7489 -1.2492 36 1 1.6766 -0.2075 -2.1392 37 1 3.1300 -0.7216 -1.2489 38 1 2.5760 -0.2192 1.8347 39 1 1.2319 -4.5638 2.1485 40 1 2.0994 -5.6608 4.1794 41 1 1.8734 -4.2460 7.1510 42 1 1.9366 -5.7552 6.2087 43 1 3.7224 -6.6164 7.6826 44 1 2.2879 -6.1734 8.6395 45 1 5.0444 -4.7920 10.5813 46 1 3.5957 -5.8240 10.6473 47 1 6.8563 -9.1505 10.9750 48 1 5.6548 -5.1138 7.6618 49 1 5.5917 -3.6046 8.6041 50 1 5.2403 -3.1864 6.1732 51 1 3.8060 -2.7432 7.1299 52 1 3.2513 -0.9741 3.3713 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001165056030.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:39:20 Heat of formation + Delta-G solvation = -0.414656 kcal Electronic energy + Delta-G solvation = -30283.915089 eV Core-core repulsion = 26282.768990 eV Total energy + Delta-G solvation = -4001.146099 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -42.07228 -41.01254 -39.64374 -37.51599 -36.79788 -34.52958 -33.71869 -33.48326 -31.90551 -31.44940 -29.66800 -28.22025 -28.17419 -27.05685 -25.48455 -24.66098 -23.70831 -23.17412 -22.08498 -20.81937 -20.59219 -19.22270 -18.91378 -18.32769 -17.70723 -16.73353 -16.58251 -16.27075 -16.15168 -15.94131 -15.90854 -15.76654 -15.42604 -15.10800 -15.00686 -14.66298 -14.52444 -14.42950 -14.20194 -14.09087 -13.70320 -13.54406 -13.25710 -13.02881 -12.99031 -12.96072 -12.89358 -12.51836 -12.39968 -12.21428 -12.15440 -12.09461 -12.00448 -11.86126 -11.75988 -11.55795 -11.09552 -10.98119 -10.86683 -10.78111 -10.41858 -10.11026 -9.18128 -9.04404 -8.30477 -6.36063 -0.38978 0.25829 1.36903 1.38604 1.50401 1.78675 2.13246 2.34628 2.41733 2.83879 3.04629 3.24879 3.27930 3.66593 3.81807 3.83270 3.90588 4.02754 4.03913 4.05407 4.12270 4.16965 4.28432 4.36831 4.46225 4.59904 4.63533 4.72425 4.75424 4.78144 4.79483 4.82370 4.89479 4.93337 4.97338 4.99548 5.02761 5.05365 5.09810 5.12603 5.17006 5.25351 5.35816 5.38453 5.42201 5.49622 5.60113 5.62640 6.00021 6.13236 6.31396 6.33171 6.57123 6.71037 6.84209 7.23013 7.30800 8.85689 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.033287 B = 0.001827 C = 0.001796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.957636 B =15324.453463 C =15589.420080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.164 3.836 3 C -0.150 4.150 4 C -0.162 4.162 5 N -0.709 5.709 6 C 0.573 3.427 7 O -0.566 6.566 8 C -0.235 4.235 9 C 0.004 3.996 10 C -0.198 4.198 11 C 0.333 3.667 12 N -0.490 5.490 13 C 0.076 3.924 14 C 0.061 3.939 15 N -0.531 5.531 16 C 0.161 3.839 17 C -0.548 4.548 18 H 0.034 0.966 19 C 0.010 3.990 20 N -0.948 5.948 21 Si 0.951 3.049 22 H -0.266 1.266 23 H -0.287 1.287 24 H -0.245 1.245 25 C 0.059 3.941 26 C 0.089 3.911 27 N -0.540 5.540 28 C 0.172 3.828 29 H 0.058 0.942 30 H 0.077 0.923 31 H 0.049 0.951 32 H 0.071 0.929 33 H 0.084 0.916 34 H 0.072 0.928 35 H 0.049 0.951 36 H 0.077 0.923 37 H 0.057 0.943 38 H 0.411 0.589 39 H 0.152 0.848 40 H 0.153 0.847 41 H 0.061 0.939 42 H 0.106 0.894 43 H 0.023 0.977 44 H 0.085 0.915 45 H 0.031 0.969 46 H 0.035 0.965 47 H 0.265 0.735 48 H 0.016 0.984 49 H 0.081 0.919 50 H 0.087 0.913 51 H 0.061 0.939 52 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.877 21.453 -19.440 31.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.079 3.921 3 C -0.208 4.208 4 C -0.220 4.220 5 N -0.362 5.362 6 C 0.361 3.639 7 O -0.447 6.447 8 C -0.241 4.241 9 C -0.022 4.022 10 C -0.221 4.221 11 C 0.101 3.899 12 N -0.206 5.206 13 C -0.049 4.049 14 C -0.067 4.067 15 N -0.254 5.254 16 C 0.033 3.967 17 C -0.587 4.587 18 H 0.052 0.948 19 C -0.188 4.188 20 N -0.588 5.588 21 Si 0.774 3.226 22 H -0.191 1.191 23 H -0.213 1.213 24 H -0.168 1.168 25 C -0.069 4.069 26 C -0.038 4.038 27 N -0.254 5.254 28 C 0.012 3.988 29 H 0.077 0.923 30 H 0.095 0.905 31 H 0.068 0.932 32 H 0.090 0.910 33 H 0.103 0.897 34 H 0.091 0.909 35 H 0.068 0.932 36 H 0.096 0.904 37 H 0.076 0.924 38 H 0.249 0.751 39 H 0.169 0.831 40 H 0.170 0.830 41 H 0.079 0.921 42 H 0.124 0.876 43 H 0.041 0.959 44 H 0.104 0.896 45 H 0.049 0.951 46 H 0.053 0.947 47 H 0.074 0.926 48 H 0.034 0.966 49 H 0.099 0.901 50 H 0.105 0.895 51 H 0.080 0.920 52 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -11.735 21.334 -19.255 31.042 hybrid contribution 0.381 -1.268 0.488 1.411 sum -11.354 20.066 -18.766 29.728 Atomic orbital electron populations 1.22192 0.94665 1.02432 1.02654 1.20500 0.94167 0.93138 0.84252 1.22068 1.02209 0.92298 1.04182 1.22198 1.01082 1.01358 0.97362 1.46040 1.53405 1.10982 1.25792 1.17963 0.79282 0.82062 0.84619 1.90712 1.39439 1.67137 1.47393 1.20842 1.07270 0.96848 0.99187 1.21365 0.93245 0.93011 0.94576 1.21416 1.02381 1.02453 0.95825 1.20209 0.88995 0.88102 0.92546 1.58933 1.21377 1.33551 1.06748 1.22372 0.90313 0.99265 0.92991 1.22015 0.97178 0.93852 0.93692 1.62683 1.21433 1.34428 1.06851 1.20038 0.94333 0.92314 0.89973 1.21877 1.32447 1.10656 0.93731 0.94781 1.25941 0.94180 0.94298 1.04406 1.70088 1.36546 1.16781 1.35405 0.85659 0.78031 0.80211 0.78694 1.19131 1.21303 1.16824 1.22073 0.93191 0.97810 0.93876 1.21940 0.97008 0.92411 0.92460 1.67735 1.26552 1.08608 1.22532 1.23176 0.89054 1.00072 0.86500 0.92292 0.90455 0.93168 0.91009 0.89676 0.90915 0.93190 0.90435 0.92404 0.75144 0.83078 0.82962 0.92118 0.87612 0.95904 0.89643 0.95057 0.94729 0.92574 0.96555 0.90066 0.89454 0.92038 0.79339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.19 8.40 71.98 0.60 -1.58 16 2 C 0.16 1.91 1.06 3.60 0.00 1.91 16 3 C -0.15 -0.83 8.59 71.98 0.62 -0.21 16 4 C -0.16 -2.25 8.40 71.98 0.60 -1.64 16 5 N -0.71 -9.03 5.06 -426.03 -2.15 -11.18 16 6 C 0.57 11.22 7.19 86.70 0.62 11.84 16 7 O -0.57 -14.67 12.61 -4.01 -0.05 -14.72 16 8 C -0.23 -4.62 5.89 -19.99 -0.12 -4.74 16 9 C 0.00 0.09 9.65 22.46 0.22 0.31 16 10 C -0.20 -4.52 9.14 22.23 0.20 -4.31 16 11 C 0.33 8.83 6.39 133.25 0.85 9.68 16 12 N -0.49 -14.88 4.72 -701.50 -3.31 -18.19 16 13 C 0.08 2.16 5.36 86.31 0.46 2.62 16 14 C 0.06 2.25 5.24 86.31 0.45 2.71 16 15 N -0.53 -21.10 4.92 -900.32 -4.43 -25.53 16 16 C 0.16 7.41 4.21 85.55 0.36 7.77 16 17 C -0.55 -30.55 8.21 25.60 0.21 -30.34 16 18 H 0.03 2.15 6.07 -2.91 -0.02 2.13 16 19 C 0.01 0.55 5.47 84.65 0.46 1.02 16 20 N -0.95 -58.76 13.96 21.45 0.30 -58.46 16 21 Si 0.95 43.13 27.37 68.60 1.88 45.01 16 22 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 23 H -0.29 -12.95 7.11 99.48 0.71 -12.25 16 24 H -0.24 -10.26 6.69 99.48 0.67 -9.59 16 25 C 0.06 2.25 5.32 86.31 0.46 2.71 16 26 C 0.09 2.76 4.78 86.31 0.41 3.17 16 27 N -0.54 -13.11 8.66 -192.33 -1.67 -14.78 16 28 C 0.17 3.11 10.71 85.03 0.91 4.02 16 29 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.08 0.80 8.14 -2.38 -0.02 0.78 16 31 H 0.05 1.00 6.16 -2.39 -0.01 0.99 16 32 H 0.07 0.31 8.14 -2.39 -0.02 0.29 16 33 H 0.08 0.33 8.14 -2.38 -0.02 0.31 16 34 H 0.07 0.30 8.14 -2.39 -0.02 0.28 16 35 H 0.05 1.01 6.16 -2.39 -0.01 1.00 16 36 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 37 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 38 H 0.41 2.96 6.52 -92.70 -0.60 2.35 16 39 H 0.15 2.97 7.73 -2.91 -0.02 2.95 16 40 H 0.15 3.10 7.17 -2.91 -0.02 3.07 16 41 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 42 H 0.11 2.50 6.77 -2.39 -0.02 2.49 16 43 H 0.02 1.01 6.62 -2.39 -0.02 0.99 16 44 H 0.09 2.95 8.14 -2.39 -0.02 2.93 16 45 H 0.03 1.43 7.52 -2.39 -0.02 1.42 16 46 H 0.03 1.55 7.30 -2.39 -0.02 1.53 16 47 H 0.27 15.40 8.31 -92.71 -0.77 14.62 16 48 H 0.02 0.74 6.78 -2.39 -0.02 0.72 16 49 H 0.08 2.92 8.12 -2.39 -0.02 2.90 16 50 H 0.09 2.63 7.81 -2.39 -0.02 2.61 16 51 H 0.06 1.85 8.04 -2.39 -0.02 1.83 16 52 H 0.19 1.84 6.41 -2.91 -0.02 1.82 16 Total: -1.00 -71.95 398.95 -1.81 -73.77 By element: Atomic # 1 Polarization: 18.87 SS G_CDS: 0.28 Total: 19.15 kcal Atomic # 6 Polarization: -2.41 SS G_CDS: 7.34 Total: 4.93 kcal Atomic # 7 Polarization: -116.88 SS G_CDS: -11.26 Total: -128.14 kcal Atomic # 8 Polarization: -14.67 SS G_CDS: -0.05 Total: -14.72 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 1.88 Total: 45.01 kcal Total: -71.95 -1.81 -73.77 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165056030.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.352 kcal (2) G-P(sol) polarization free energy of solvation -71.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds