Wall clock time and date at job start Wed Apr 1 2020 05:39:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52994 * 109.46960 * 2 1 4 4 C 1.53000 * 109.47397 * 239.99646 * 2 1 3 5 5 N 1.46505 * 109.46810 * 119.99486 * 2 1 3 6 6 C 1.34776 * 119.99659 * 60.00566 * 5 2 1 7 7 O 1.21514 * 120.00305 * 359.97438 * 6 5 2 8 8 C 1.48164 * 119.99898 * 179.97438 * 6 5 2 9 9 C 1.40019 * 120.88374 * 359.97438 * 8 6 5 10 10 C 1.37938 * 119.17817 * 180.02562 * 9 8 6 11 11 N 1.31915 * 121.00395 * 0.02562 * 10 9 8 12 12 C 1.32326 * 121.94322 * 359.97438 * 11 10 9 13 13 N 1.39025 * 119.64309 * 179.97438 * 12 11 10 14 14 C 1.46954 * 111.00109 * 359.97438 * 13 12 11 15 15 C 1.53055 * 109.36378 * 183.18883 * 14 13 12 16 16 N 1.46953 * 109.36514 * 301.60308 * 15 14 13 17 17 C 1.46906 * 110.99875 * 183.18861 * 16 15 14 18 18 C 1.50699 * 109.47140 * 170.00105 * 17 16 15 19 19 H 1.08003 * 119.99962 * 359.97438 * 18 17 16 20 20 C 1.37873 * 119.99861 * 180.02562 * 18 17 16 21 21 N 1.31522 * 120.00244 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99980 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.46950 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.47074 * 119.99839 * 22 20 18 25 25 H 1.48505 * 109.46997 * 239.99833 * 22 20 18 26 26 C 1.46951 * 110.88066 * 59.32047 * 16 15 14 27 27 C 1.46956 * 111.00342 * 123.79748 * 13 12 11 28 28 C 1.39119 * 120.71113 * 0.25529 * 12 11 10 29 29 H 1.08993 * 109.47658 * 300.00109 * 1 2 3 30 30 H 1.09003 * 109.47417 * 60.00646 * 1 2 3 31 31 H 1.09004 * 109.47442 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47432 * 179.97438 * 3 2 1 33 33 H 1.08997 * 109.47332 * 299.99601 * 3 2 1 34 34 H 1.09004 * 109.47483 * 59.99734 * 3 2 1 35 35 H 1.09004 * 109.46953 * 300.00456 * 4 2 1 36 36 H 1.09001 * 109.46550 * 60.00035 * 4 2 1 37 37 H 1.08995 * 109.46992 * 180.02562 * 4 2 1 38 38 H 0.96992 * 120.00153 * 240.00409 * 5 2 1 39 39 H 1.08002 * 120.40636 * 0.04426 * 9 8 6 40 40 H 1.08001 * 119.49790 * 179.97438 * 10 9 8 41 41 H 1.09005 * 109.48381 * 63.22697 * 14 13 12 42 42 H 1.08996 * 109.49567 * 303.16645 * 14 13 12 43 43 H 1.09003 * 109.48634 * 181.63672 * 15 14 13 44 44 H 1.09004 * 109.48678 * 61.57576 * 15 14 13 45 45 H 1.09004 * 109.47040 * 290.00043 * 17 16 15 46 46 H 1.09000 * 109.47033 * 49.99995 * 17 16 15 47 47 H 0.96992 * 120.00038 * 179.97438 * 21 20 18 48 48 H 1.09005 * 109.48678 * 60.64401 * 26 16 15 49 49 H 1.09004 * 109.48825 * 180.70927 * 26 16 15 50 50 H 1.08998 * 109.48856 * 296.77756 * 27 13 12 51 51 H 1.09004 * 109.48212 * 56.81898 * 27 13 12 52 52 H 1.07998 * 120.53602 * 179.74566 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 2.0183 -0.6905 1.1963 6 6 1.6927 -1.9809 1.4095 7 8 0.9938 -2.5714 0.6099 8 6 2.1869 -2.6795 2.6191 9 6 2.9937 -2.0171 3.5523 10 6 3.4347 -2.7016 4.6658 11 7 3.1080 -3.9647 4.8605 12 6 2.3483 -4.6311 4.0062 13 7 2.0338 -5.9615 4.2586 14 6 2.6449 -6.4180 5.5147 15 6 2.3420 -7.9048 5.7154 16 7 0.8866 -8.1070 5.7371 17 6 0.5543 -9.5129 6.0038 18 6 -0.9250 -9.6393 6.2619 19 1 -1.5553 -8.7628 6.2313 20 6 -1.4736 -10.8736 6.5380 21 7 -0.7060 -11.9409 6.5757 22 14 -3.3075 -11.0304 6.8572 23 1 -3.9436 -9.6923 6.7567 24 1 -3.9090 -11.9418 5.8508 25 1 -3.5277 -11.5817 8.2184 26 6 0.2756 -7.6505 4.4811 27 6 0.5784 -6.1639 4.2799 28 6 1.8656 -4.0162 2.8554 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5137 -0.8901 31 1 -0.3634 -1.0277 0.0005 32 1 3.1299 1.4425 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6765 1.9564 0.8900 35 1 1.6766 -1.7490 -1.2491 36 1 1.6767 -0.2075 -2.1391 37 1 3.1300 -0.7217 -1.2489 38 1 2.5758 -0.2191 1.8348 39 1 3.2671 -0.9831 3.4023 40 1 4.0576 -2.1959 5.3887 41 1 2.2336 -5.8475 6.3475 42 1 3.7237 -6.2695 5.4694 43 1 2.7697 -8.2386 6.6609 44 1 2.7767 -8.4783 4.8967 45 1 0.8257 -10.1205 5.1404 46 1 1.1064 -9.8572 6.8783 47 1 -1.0919 -12.8092 6.7703 48 1 0.6868 -8.2211 3.6483 49 1 -0.8033 -7.7990 4.5265 50 1 0.1434 -5.5905 5.0985 51 1 0.1510 -5.8298 3.3344 52 1 1.2491 -4.5640 2.1580 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001165056932.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:39:27 Heat of formation + Delta-G solvation = 20.601794 kcal Electronic energy + Delta-G solvation = -30346.396269 eV Core-core repulsion = 26346.161512 eV Total energy + Delta-G solvation = -4000.234757 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.14235 -40.12261 -38.34648 -36.85890 -35.25243 -33.35425 -32.54786 -31.90216 -30.51713 -30.33616 -27.84414 -27.65891 -27.61321 -25.51618 -24.82776 -23.47278 -22.42381 -21.75614 -21.08061 -19.96558 -19.34557 -18.45912 -16.93965 -16.41561 -16.32804 -15.95037 -15.79904 -15.44520 -15.09481 -14.76052 -14.50085 -14.44558 -14.27348 -14.20155 -13.99814 -13.91154 -13.59081 -13.49136 -12.98422 -12.87391 -12.53053 -12.51163 -12.20841 -12.06848 -12.01969 -11.77884 -11.57570 -11.47615 -11.27128 -10.94011 -10.82769 -10.75639 -10.51751 -10.42444 -10.20756 -10.10955 -9.88791 -9.74425 -9.57676 -9.48670 -9.16445 -8.44231 -8.10623 -7.27489 -6.02930 -4.04517 0.53727 0.95457 2.63216 2.65032 3.31287 3.38748 3.43330 3.46495 3.76793 4.13620 4.33528 4.40857 4.42243 4.47545 4.61524 4.69654 4.84169 4.88093 4.93337 5.06986 5.18714 5.27316 5.29772 5.33079 5.36846 5.40404 5.41671 5.48354 5.54891 5.56743 5.59015 5.69753 5.74564 5.81164 5.83478 5.93055 5.98981 6.00193 6.11411 6.18110 6.26056 6.40738 6.55585 6.59377 6.80851 7.10900 7.19231 7.28372 7.34289 7.78690 7.84010 7.85768 8.06352 8.17076 8.52575 9.03060 9.59892 11.07918 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.017039 B = 0.002064 C = 0.001910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1642.890127 B =13559.924243 C =14658.537775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.168 3.832 3 C -0.155 4.155 4 C -0.165 4.165 5 N -0.718 5.718 6 C 0.564 3.436 7 O -0.521 6.521 8 C -0.070 4.070 9 C -0.186 4.186 10 C 0.127 3.873 11 N -0.505 5.505 12 C 0.324 3.676 13 N -0.476 5.476 14 C 0.074 3.926 15 C 0.051 3.949 16 N -0.538 5.538 17 C 0.193 3.807 18 C -0.508 4.508 19 H 0.063 0.937 20 C 0.055 3.945 21 N -0.898 5.898 22 Si 0.898 3.102 23 H -0.272 1.272 24 H -0.285 1.285 25 H -0.284 1.284 26 C 0.066 3.934 27 C 0.062 3.938 28 C -0.130 4.130 29 H 0.055 0.945 30 H 0.064 0.936 31 H 0.080 0.920 32 H 0.062 0.938 33 H 0.075 0.925 34 H 0.062 0.938 35 H 0.079 0.921 36 H 0.064 0.936 37 H 0.054 0.946 38 H 0.400 0.600 39 H 0.133 0.867 40 H 0.160 0.840 41 H 0.058 0.942 42 H 0.081 0.919 43 H 0.078 0.922 44 H 0.031 0.969 45 H -0.007 1.007 46 H 0.032 0.968 47 H 0.261 0.739 48 H 0.033 0.967 49 H 0.095 0.905 50 H 0.054 0.946 51 H 0.081 0.919 52 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.240 28.154 -11.345 31.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.083 3.917 3 C -0.213 4.213 4 C -0.223 4.223 5 N -0.371 5.371 6 C 0.351 3.649 7 O -0.397 6.397 8 C -0.081 4.081 9 C -0.208 4.208 10 C -0.031 4.031 11 N -0.220 5.220 12 C 0.091 3.909 13 N -0.193 5.193 14 C -0.053 4.053 15 C -0.078 4.078 16 N -0.264 5.264 17 C 0.068 3.932 18 C -0.546 4.546 19 H 0.082 0.918 20 C -0.146 4.146 21 N -0.537 5.537 22 Si 0.726 3.274 23 H -0.197 1.197 24 H -0.211 1.211 25 H -0.210 1.210 26 C -0.063 4.063 27 C -0.064 4.064 28 C -0.154 4.154 29 H 0.074 0.926 30 H 0.083 0.917 31 H 0.098 0.902 32 H 0.081 0.919 33 H 0.094 0.906 34 H 0.082 0.918 35 H 0.098 0.902 36 H 0.083 0.917 37 H 0.073 0.927 38 H 0.235 0.765 39 H 0.150 0.850 40 H 0.177 0.823 41 H 0.076 0.924 42 H 0.100 0.900 43 H 0.096 0.904 44 H 0.050 0.950 45 H 0.011 0.989 46 H 0.050 0.950 47 H 0.070 0.930 48 H 0.052 0.948 49 H 0.113 0.887 50 H 0.072 0.928 51 H 0.099 0.901 52 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 8.975 27.018 -11.157 30.577 hybrid contribution -0.724 0.389 -0.305 0.876 sum 8.251 27.406 -11.462 30.831 Atomic orbital electron populations 1.22242 0.93965 1.04295 1.01856 1.20382 0.94644 0.91748 0.84895 1.22094 1.01639 0.94352 1.03221 1.22240 1.00980 1.02933 0.96177 1.46063 1.53870 1.11754 1.25444 1.18185 0.79998 0.81571 0.85190 1.90736 1.36920 1.66111 1.45909 1.20109 0.98366 0.94550 0.95105 1.22011 1.01143 1.01123 0.96530 1.22484 0.95876 0.89410 0.95314 1.67580 1.15498 1.09285 1.29666 1.19971 0.91946 0.88930 0.90028 1.59285 1.12789 1.11632 1.35608 1.22103 0.99230 0.95816 0.88109 1.22185 0.90988 0.93864 1.00750 1.62316 1.06976 1.25282 1.31814 1.19724 0.96968 0.80679 0.95818 1.21183 0.92693 0.93368 1.47372 0.91834 1.24997 0.98260 0.95788 0.95605 1.69969 1.35209 0.98897 1.49643 0.86447 0.85141 0.78088 0.77768 1.19673 1.21100 1.21040 1.22035 1.01494 0.91254 0.91511 1.22505 0.82965 0.99384 1.01505 1.21702 1.01906 0.93916 0.97840 0.92627 0.91722 0.90151 0.91863 0.90640 0.91845 0.90167 0.91723 0.92656 0.76494 0.84959 0.82292 0.92385 0.90042 0.90355 0.95040 0.98917 0.95039 0.92965 0.94843 0.88722 0.92775 0.90074 0.83336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.27 8.40 37.16 0.31 -0.96 16 2 C 0.17 1.13 1.06 -131.82 -0.14 0.99 16 3 C -0.16 -0.62 8.59 37.15 0.32 -0.30 16 4 C -0.17 -1.26 8.40 37.16 0.31 -0.94 16 5 N -0.72 -5.19 5.06 -48.44 -0.25 -5.43 16 6 C 0.56 6.02 7.22 -12.18 -0.09 5.94 16 7 O -0.52 -7.15 12.64 5.35 0.07 -7.08 16 8 C -0.07 -0.76 5.91 -104.68 -0.62 -1.38 16 9 C -0.19 -1.54 9.61 -39.02 -0.37 -1.92 16 10 C 0.13 1.22 11.16 -17.63 -0.20 1.03 16 11 N -0.51 -6.71 8.67 -12.48 -0.11 -6.82 16 12 C 0.32 4.64 6.40 -155.07 -0.99 3.65 16 13 N -0.48 -7.56 4.73 -173.06 -0.82 -8.38 16 14 C 0.07 1.20 4.79 -3.77 -0.02 1.18 16 15 C 0.05 0.95 5.61 -3.77 -0.02 0.93 16 16 N -0.54 -11.66 4.70 -235.91 -1.11 -12.77 16 17 C 0.19 5.03 4.72 -4.97 -0.02 5.01 16 18 C -0.51 -14.17 8.47 -34.44 -0.29 -14.46 16 19 H 0.06 1.75 7.13 -52.48 -0.37 1.38 16 20 C 0.05 1.55 5.46 -17.82 -0.10 1.46 16 21 N -0.90 -26.69 13.29 55.43 0.74 -25.95 16 22 Si 0.90 21.64 29.54 -169.99 -5.02 16.62 16 23 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 24 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 25 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 26 C 0.07 1.28 5.43 -3.77 -0.02 1.26 16 27 C 0.06 1.00 5.37 -3.77 -0.02 0.98 16 28 C -0.13 -1.70 8.78 -38.78 -0.34 -2.04 16 29 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.08 0.85 6.16 -51.93 -0.32 0.53 16 32 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 33 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 34 H 0.06 0.22 8.14 -51.93 -0.42 -0.21 16 35 H 0.08 0.84 6.17 -51.93 -0.32 0.52 16 36 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.40 1.83 6.61 -40.82 -0.27 1.56 16 39 H 0.13 0.59 6.53 -52.49 -0.34 0.25 16 40 H 0.16 1.02 8.06 -52.49 -0.42 0.59 16 41 H 0.06 0.98 8.05 -51.93 -0.42 0.56 16 42 H 0.08 1.23 7.82 -51.93 -0.41 0.83 16 43 H 0.08 1.41 8.07 -51.93 -0.42 0.99 16 44 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 45 H -0.01 -0.20 8.12 -51.93 -0.42 -0.62 16 46 H 0.03 0.87 8.03 -51.93 -0.42 0.46 16 47 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 48 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 49 H 0.09 1.94 6.79 -51.93 -0.35 1.59 16 50 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 51 H 0.08 1.15 6.80 -51.93 -0.35 0.80 16 52 H 0.15 2.02 6.87 -52.49 -0.36 1.66 16 LS Contribution 406.26 15.07 6.12 6.12 Total: -1.00 -32.61 406.26 -11.24 -43.84 By element: Atomic # 1 Polarization: 8.01 SS G_CDS: -8.56 Total: -0.55 kcal Atomic # 6 Polarization: 2.70 SS G_CDS: -2.30 Total: 0.40 kcal Atomic # 7 Polarization: -57.81 SS G_CDS: -1.54 Total: -59.36 kcal Atomic # 8 Polarization: -7.15 SS G_CDS: 0.07 Total: -7.08 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -32.61 -11.24 -43.84 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165056932.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.444 kcal (2) G-P(sol) polarization free energy of solvation -32.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.842 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds