Wall clock time and date at job start Wed Apr 1 2020 05:39:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52994 * 109.46960 * 2 1 4 4 C 1.53000 * 109.47397 * 239.99646 * 2 1 3 5 5 N 1.46505 * 109.46810 * 119.99486 * 2 1 3 6 6 C 1.34776 * 119.99659 * 60.00566 * 5 2 1 7 7 O 1.21514 * 120.00305 * 359.97438 * 6 5 2 8 8 C 1.48164 * 119.99898 * 179.97438 * 6 5 2 9 9 C 1.40019 * 120.88374 * 359.97438 * 8 6 5 10 10 C 1.37938 * 119.17817 * 180.02562 * 9 8 6 11 11 N 1.31915 * 121.00395 * 0.02562 * 10 9 8 12 12 C 1.32326 * 121.94322 * 359.97438 * 11 10 9 13 13 N 1.39025 * 119.64309 * 179.97438 * 12 11 10 14 14 C 1.46954 * 111.00109 * 359.97438 * 13 12 11 15 15 C 1.53055 * 109.36378 * 183.18883 * 14 13 12 16 16 N 1.46953 * 109.36514 * 301.60308 * 15 14 13 17 17 C 1.46906 * 110.99875 * 183.18861 * 16 15 14 18 18 C 1.50699 * 109.47140 * 170.00105 * 17 16 15 19 19 H 1.08003 * 119.99962 * 359.97438 * 18 17 16 20 20 C 1.37873 * 119.99861 * 180.02562 * 18 17 16 21 21 N 1.31522 * 120.00244 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99980 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.46950 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.47074 * 119.99839 * 22 20 18 25 25 H 1.48505 * 109.46997 * 239.99833 * 22 20 18 26 26 C 1.46951 * 110.88066 * 59.32047 * 16 15 14 27 27 C 1.46956 * 111.00342 * 123.79748 * 13 12 11 28 28 C 1.39119 * 120.71113 * 0.25529 * 12 11 10 29 29 H 1.08993 * 109.47658 * 300.00109 * 1 2 3 30 30 H 1.09003 * 109.47417 * 60.00646 * 1 2 3 31 31 H 1.09004 * 109.47442 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47432 * 179.97438 * 3 2 1 33 33 H 1.08997 * 109.47332 * 299.99601 * 3 2 1 34 34 H 1.09004 * 109.47483 * 59.99734 * 3 2 1 35 35 H 1.09004 * 109.46953 * 300.00456 * 4 2 1 36 36 H 1.09001 * 109.46550 * 60.00035 * 4 2 1 37 37 H 1.08995 * 109.46992 * 180.02562 * 4 2 1 38 38 H 0.96992 * 120.00153 * 240.00409 * 5 2 1 39 39 H 1.08002 * 120.40636 * 0.04426 * 9 8 6 40 40 H 1.08001 * 119.49790 * 179.97438 * 10 9 8 41 41 H 1.09005 * 109.48381 * 63.22697 * 14 13 12 42 42 H 1.08996 * 109.49567 * 303.16645 * 14 13 12 43 43 H 1.09003 * 109.48634 * 181.63672 * 15 14 13 44 44 H 1.09004 * 109.48678 * 61.57576 * 15 14 13 45 45 H 1.09004 * 109.47040 * 290.00043 * 17 16 15 46 46 H 1.09000 * 109.47033 * 49.99995 * 17 16 15 47 47 H 0.96992 * 120.00038 * 179.97438 * 21 20 18 48 48 H 1.09005 * 109.48678 * 60.64401 * 26 16 15 49 49 H 1.09004 * 109.48825 * 180.70927 * 26 16 15 50 50 H 1.08998 * 109.48856 * 296.77756 * 27 13 12 51 51 H 1.09004 * 109.48212 * 56.81898 * 27 13 12 52 52 H 1.07998 * 120.53602 * 179.74566 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 2.0183 -0.6905 1.1963 6 6 1.6927 -1.9809 1.4095 7 8 0.9938 -2.5714 0.6099 8 6 2.1869 -2.6795 2.6191 9 6 2.9937 -2.0171 3.5523 10 6 3.4347 -2.7016 4.6658 11 7 3.1080 -3.9647 4.8605 12 6 2.3483 -4.6311 4.0062 13 7 2.0338 -5.9615 4.2586 14 6 2.6449 -6.4180 5.5147 15 6 2.3420 -7.9048 5.7154 16 7 0.8866 -8.1070 5.7371 17 6 0.5543 -9.5129 6.0038 18 6 -0.9250 -9.6393 6.2619 19 1 -1.5553 -8.7628 6.2313 20 6 -1.4736 -10.8736 6.5380 21 7 -0.7060 -11.9409 6.5757 22 14 -3.3075 -11.0304 6.8572 23 1 -3.9436 -9.6923 6.7567 24 1 -3.9090 -11.9418 5.8508 25 1 -3.5277 -11.5817 8.2184 26 6 0.2756 -7.6505 4.4811 27 6 0.5784 -6.1639 4.2799 28 6 1.8656 -4.0162 2.8554 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5137 -0.8901 31 1 -0.3634 -1.0277 0.0005 32 1 3.1299 1.4425 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6765 1.9564 0.8900 35 1 1.6766 -1.7490 -1.2491 36 1 1.6767 -0.2075 -2.1391 37 1 3.1300 -0.7217 -1.2489 38 1 2.5758 -0.2191 1.8348 39 1 3.2671 -0.9831 3.4023 40 1 4.0576 -2.1959 5.3887 41 1 2.2336 -5.8475 6.3475 42 1 3.7237 -6.2695 5.4694 43 1 2.7697 -8.2386 6.6609 44 1 2.7767 -8.4783 4.8967 45 1 0.8257 -10.1205 5.1404 46 1 1.1064 -9.8572 6.8783 47 1 -1.0919 -12.8092 6.7703 48 1 0.6868 -8.2211 3.6483 49 1 -0.8033 -7.7990 4.5265 50 1 0.1434 -5.5905 5.0985 51 1 0.1510 -5.8298 3.3344 52 1 1.2491 -4.5640 2.1580 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001165056932.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:39:25 Heat of formation + Delta-G solvation = -2.137643 kcal Electronic energy + Delta-G solvation = -30347.382325 eV Core-core repulsion = 26346.161512 eV Total energy + Delta-G solvation = -4001.220813 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -42.05231 -41.02704 -39.62389 -37.55954 -36.74930 -34.67301 -34.14763 -32.75025 -31.87104 -31.50902 -29.36899 -28.24152 -28.21119 -26.97731 -26.01164 -24.72825 -23.68701 -23.32538 -22.08592 -20.83432 -20.59760 -19.34781 -18.51948 -17.88923 -17.32448 -16.84130 -16.66721 -16.61500 -16.29960 -15.98300 -15.91367 -15.66672 -15.48653 -15.19699 -15.06408 -14.90662 -14.82860 -14.51946 -14.32781 -13.95733 -13.45546 -13.30456 -13.18824 -13.04690 -13.03350 -12.91595 -12.74655 -12.60864 -12.54537 -12.36906 -12.21569 -12.12991 -12.10341 -12.03311 -11.66439 -11.27095 -11.09879 -11.00271 -10.85260 -10.62936 -10.46765 -10.15671 -9.19191 -9.08841 -8.21654 -6.31916 -0.32219 0.07921 1.40814 1.41099 1.54901 1.79937 1.95693 2.39295 2.43811 2.85030 3.10210 3.21694 3.40051 3.50237 3.80426 3.87526 3.95440 3.97411 3.99185 4.06968 4.12315 4.14312 4.23239 4.27703 4.37368 4.54948 4.65574 4.69489 4.72519 4.72672 4.78043 4.81399 4.86772 4.89658 4.92472 4.95270 4.96740 5.00543 5.00980 5.17385 5.22651 5.24377 5.33873 5.39077 5.41028 5.55879 5.58052 5.64084 6.01600 6.06899 6.26903 6.50458 6.55566 6.83486 6.93960 7.13733 7.37749 8.89809 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.017039 B = 0.002064 C = 0.001910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1642.890127 B =13559.924243 C =14658.537775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.164 3.836 3 C -0.148 4.148 4 C -0.164 4.164 5 N -0.699 5.699 6 C 0.560 3.440 7 O -0.559 6.559 8 C -0.076 4.076 9 C -0.156 4.156 10 C 0.124 3.876 11 N -0.524 5.524 12 C 0.301 3.699 13 N -0.488 5.488 14 C 0.092 3.908 15 C 0.051 3.949 16 N -0.544 5.544 17 C 0.208 3.792 18 C -0.523 4.523 19 H 0.064 0.936 20 C 0.001 3.999 21 N -0.934 5.934 22 Si 0.971 3.029 23 H -0.263 1.263 24 H -0.279 1.279 25 H -0.278 1.278 26 C 0.069 3.931 27 C 0.077 3.923 28 C -0.146 4.146 29 H 0.060 0.940 30 H 0.078 0.922 31 H 0.045 0.955 32 H 0.075 0.925 33 H 0.084 0.916 34 H 0.074 0.926 35 H 0.045 0.955 36 H 0.078 0.922 37 H 0.061 0.939 38 H 0.415 0.585 39 H 0.181 0.819 40 H 0.199 0.801 41 H 0.051 0.949 42 H 0.095 0.905 43 H 0.080 0.920 44 H 0.023 0.977 45 H -0.038 1.038 46 H 0.008 0.992 47 H 0.265 0.735 48 H 0.022 0.978 49 H 0.080 0.920 50 H 0.049 0.951 51 H 0.098 0.902 52 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.905 32.425 -11.287 35.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.080 3.920 3 C -0.206 4.206 4 C -0.222 4.222 5 N -0.353 5.353 6 C 0.347 3.653 7 O -0.438 6.438 8 C -0.087 4.087 9 C -0.177 4.177 10 C -0.034 4.034 11 N -0.239 5.239 12 C 0.070 3.930 13 N -0.206 5.206 14 C -0.035 4.035 15 C -0.077 4.077 16 N -0.269 5.269 17 C 0.082 3.918 18 C -0.561 4.561 19 H 0.082 0.918 20 C -0.197 4.197 21 N -0.574 5.574 22 Si 0.796 3.204 23 H -0.187 1.187 24 H -0.204 1.204 25 H -0.204 1.204 26 C -0.060 4.060 27 C -0.049 4.049 28 C -0.170 4.170 29 H 0.079 0.921 30 H 0.096 0.904 31 H 0.065 0.935 32 H 0.094 0.906 33 H 0.103 0.897 34 H 0.093 0.907 35 H 0.064 0.936 36 H 0.096 0.904 37 H 0.080 0.920 38 H 0.254 0.746 39 H 0.199 0.801 40 H 0.216 0.784 41 H 0.070 0.930 42 H 0.113 0.887 43 H 0.099 0.901 44 H 0.042 0.958 45 H -0.020 1.020 46 H 0.026 0.974 47 H 0.073 0.927 48 H 0.041 0.959 49 H 0.098 0.902 50 H 0.067 0.933 51 H 0.116 0.884 52 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 9.672 31.352 -11.100 34.637 hybrid contribution -0.831 -0.772 -0.378 1.195 sum 8.842 30.580 -11.478 33.839 Atomic orbital electron populations 1.22217 0.94881 1.02311 1.02831 1.20528 0.94024 0.93385 0.84099 1.22058 1.02381 0.91827 1.04311 1.22213 1.01285 1.01214 0.97479 1.45971 1.53019 1.10498 1.25801 1.18262 0.79752 0.82501 0.84781 1.90738 1.38742 1.67204 1.47119 1.20264 0.98764 0.93850 0.95845 1.22495 0.97974 1.02846 0.94376 1.23220 0.95567 0.88207 0.96359 1.67547 1.15387 1.11094 1.29853 1.19794 0.93774 0.88443 0.90968 1.59263 1.12086 1.13789 1.35421 1.21873 0.99945 0.93359 0.88355 1.22250 0.88895 0.95974 1.00604 1.62241 1.09201 1.22212 1.33218 1.19377 0.96144 0.82832 0.93448 1.21467 0.93545 0.93647 1.47420 0.91792 1.25934 1.03357 0.95325 0.95132 1.70096 1.37457 0.99508 1.50381 0.85308 0.78953 0.78416 0.77767 1.18698 1.20431 1.20369 1.21984 1.00365 0.93573 0.90057 1.22276 0.84108 0.96359 1.02147 1.21599 1.02679 0.95176 0.97524 0.92072 0.90360 0.93545 0.90634 0.89709 0.90683 0.93570 0.90354 0.92028 0.74598 0.80149 0.78393 0.93045 0.88655 0.90116 0.95832 1.01988 0.97425 0.92663 0.95942 0.90153 0.93268 0.88398 0.85020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.32 8.40 71.98 0.60 -1.72 16 2 C 0.16 1.83 1.06 3.60 0.00 1.84 16 3 C -0.15 -0.59 8.59 71.98 0.62 0.02 16 4 C -0.16 -2.29 8.40 71.98 0.60 -1.68 16 5 N -0.70 -8.17 5.06 -425.46 -2.15 -10.33 16 6 C 0.56 11.34 7.22 86.88 0.63 11.97 16 7 O -0.56 -15.82 12.64 -3.76 -0.05 -15.86 16 8 C -0.08 -1.52 5.91 -19.90 -0.12 -1.63 16 9 C -0.16 -1.93 9.61 22.63 0.22 -1.72 16 10 C 0.12 1.92 11.16 84.61 0.94 2.86 16 11 N -0.52 -12.91 8.67 -193.41 -1.68 -14.58 16 12 C 0.30 8.49 6.40 133.07 0.85 9.35 16 13 N -0.49 -15.76 4.73 -701.44 -3.32 -19.08 16 14 C 0.09 2.99 4.79 86.31 0.41 3.40 16 15 C 0.05 1.98 5.61 86.31 0.48 2.47 16 16 N -0.54 -24.67 4.70 -900.27 -4.23 -28.91 16 17 C 0.21 11.46 4.72 85.56 0.40 11.86 16 18 C -0.52 -30.14 8.47 25.60 0.22 -29.92 16 19 H 0.06 3.61 7.13 -2.91 -0.02 3.59 16 20 C 0.00 0.03 5.46 84.65 0.46 0.49 16 21 N -0.93 -57.07 13.29 21.45 0.28 -56.79 16 22 Si 0.97 44.96 29.54 68.60 2.03 46.99 16 23 H -0.26 -11.68 7.11 99.48 0.71 -10.98 16 24 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 25 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 26 C 0.07 2.82 5.43 86.31 0.47 3.29 16 27 C 0.08 2.57 5.37 86.31 0.46 3.03 16 28 C -0.15 -3.83 8.78 22.79 0.20 -3.63 16 29 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.05 1.00 6.16 -2.38 -0.01 0.98 16 32 H 0.07 0.16 8.14 -2.39 -0.02 0.14 16 33 H 0.08 0.24 8.14 -2.39 -0.02 0.22 16 34 H 0.07 0.17 8.14 -2.39 -0.02 0.15 16 35 H 0.05 0.99 6.17 -2.38 -0.01 0.97 16 36 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 37 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 38 H 0.42 1.91 6.61 -92.71 -0.61 1.29 16 39 H 0.18 0.44 6.53 -2.91 -0.02 0.42 16 40 H 0.20 1.45 8.06 -2.91 -0.02 1.43 16 41 H 0.05 1.74 8.05 -2.38 -0.02 1.72 16 42 H 0.10 2.84 7.82 -2.39 -0.02 2.82 16 43 H 0.08 3.02 8.07 -2.39 -0.02 3.00 16 44 H 0.02 0.94 8.14 -2.38 -0.02 0.92 16 45 H -0.04 -2.25 8.12 -2.38 -0.02 -2.27 16 46 H 0.01 0.45 8.03 -2.39 -0.02 0.43 16 47 H 0.26 15.14 8.31 -92.71 -0.77 14.37 16 48 H 0.02 0.96 8.14 -2.38 -0.02 0.94 16 49 H 0.08 3.47 6.79 -2.39 -0.02 3.45 16 50 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 51 H 0.10 2.91 6.80 -2.39 -0.02 2.89 16 52 H 0.13 3.81 6.87 -2.91 -0.02 3.79 16 Total: -1.00 -75.56 406.26 -1.35 -76.91 By element: Atomic # 1 Polarization: 11.09 SS G_CDS: 0.30 Total: 11.39 kcal Atomic # 6 Polarization: 2.79 SS G_CDS: 7.47 Total: 10.26 kcal Atomic # 7 Polarization: -118.59 SS G_CDS: -11.10 Total: -129.68 kcal Atomic # 8 Polarization: -15.82 SS G_CDS: -0.05 Total: -15.86 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 2.03 Total: 46.99 kcal Total: -75.56 -1.35 -76.91 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165056932.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.773 kcal (2) G-P(sol) polarization free energy of solvation -75.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds