Wall clock time and date at job start Wed Apr 1 2020 04:25:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47129 * 2 1 4 4 C 1.52995 * 109.47504 * 239.99786 * 2 1 3 5 5 C 1.50702 * 109.46981 * 119.99969 * 2 1 3 6 6 O 1.21279 * 119.99677 * 1.86281 * 5 2 1 7 7 N 1.34773 * 119.99950 * 181.86698 * 5 2 1 8 8 C 1.46931 * 120.62999 * 174.94886 * 7 5 2 9 9 C 1.53187 * 108.77536 * 233.62992 * 8 7 5 10 10 C 1.53042 * 109.31602 * 305.36310 * 9 8 7 11 11 C 1.52993 * 109.46254 * 181.38767 * 10 9 8 12 12 N 1.46497 * 109.47220 * 174.97603 * 11 10 9 13 13 C 1.38811 * 120.00427 * 179.97438 * 12 11 10 14 14 C 1.40075 * 120.76048 * 179.97438 * 13 12 11 15 15 N 1.31661 * 119.13751 * 180.02562 * 14 13 12 16 16 C 1.33601 * 120.79070 * 359.97438 * 15 14 13 17 17 C 1.41151 * 119.17047 * 179.97438 * 16 15 14 18 18 H 1.08004 * 120.00023 * 0.02562 * 17 16 15 19 19 C 1.40047 * 119.99913 * 179.97438 * 17 16 15 20 20 N 1.30720 * 119.99845 * 359.73434 * 19 17 16 21 21 Si 1.86803 * 119.99928 * 180.02562 * 19 17 16 22 22 H 1.48494 * 109.46916 * 0.02562 * 21 19 17 23 23 H 1.48497 * 109.46907 * 120.00327 * 21 19 17 24 24 H 1.48496 * 109.47253 * 240.00433 * 21 19 17 25 25 N 1.33596 * 121.65696 * 0.28523 * 16 15 14 26 26 C 1.31663 * 120.79023 * 359.43065 * 25 16 15 27 27 C 1.53041 * 109.52102 * 61.37258 * 10 9 8 28 28 C 1.46927 * 120.63199 * 354.97162 * 7 5 2 29 29 H 1.08993 * 109.47064 * 300.00470 * 1 2 3 30 30 H 1.09000 * 109.46731 * 60.00189 * 1 2 3 31 31 H 1.09002 * 109.47007 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.47337 * 169.49545 * 3 2 1 33 33 H 1.09005 * 109.47368 * 289.49527 * 3 2 1 34 34 H 1.09002 * 109.47642 * 49.49975 * 3 2 1 35 35 H 1.08999 * 109.47212 * 310.02134 * 4 2 1 36 36 H 1.08998 * 109.47530 * 70.01815 * 4 2 1 37 37 H 1.08996 * 109.47497 * 190.02189 * 4 2 1 38 38 H 1.09004 * 109.58253 * 113.84363 * 8 7 5 39 39 H 1.08996 * 109.70244 * 353.49061 * 8 7 5 40 40 H 1.09005 * 109.49529 * 185.41308 * 9 8 7 41 41 H 1.08999 * 109.52920 * 65.33304 * 9 8 7 42 42 H 1.08999 * 109.45973 * 301.36694 * 10 9 8 43 43 H 1.09003 * 109.47366 * 54.97567 * 11 10 9 44 44 H 1.08999 * 109.46986 * 294.97426 * 11 10 9 45 45 H 0.97004 * 120.00135 * 359.97438 * 12 11 10 46 46 H 1.07998 * 120.43432 * 0.02562 * 14 13 12 47 47 H 0.97002 * 120.00217 * 179.97438 * 20 19 17 48 48 H 1.07997 * 120.42809 * 180.25609 * 26 25 16 49 49 H 1.08993 * 109.49953 * 58.58445 * 27 10 9 50 50 H 1.09005 * 109.49595 * 178.67753 * 27 10 9 51 51 H 1.09001 * 109.58688 * 246.15614 * 28 7 5 52 52 H 1.09002 * 109.58611 * 6.44142 * 28 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 2.0323 -0.7104 1.2305 6 8 1.2447 -1.2008 2.0115 7 7 3.3568 -0.8007 1.4630 8 6 3.8592 -1.3920 2.7107 9 6 4.8189 -0.3998 3.3750 10 6 5.9135 -0.0101 2.3788 11 6 6.8936 0.9541 3.0499 12 7 8.0056 1.2333 2.1379 13 6 9.0264 2.0886 2.5294 14 6 10.0974 2.3662 1.6704 15 7 11.0487 3.1818 2.0746 16 6 11.0002 3.7417 3.2867 17 6 12.0388 4.6105 3.6853 18 1 12.8590 4.8157 3.0132 19 6 12.0051 5.2073 4.9518 20 7 11.0092 4.9638 5.7627 21 14 13.3792 6.3577 5.4790 22 1 14.3764 6.4718 4.3846 23 1 12.8153 7.6989 5.7761 24 1 14.0380 5.8172 6.6951 25 7 9.9965 3.4951 4.1333 26 6 9.0089 2.6939 3.7926 27 6 5.2800 0.6707 1.1634 28 6 4.3257 -0.3094 0.4738 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 3.1138 1.4482 0.1874 33 1 1.8378 1.8994 -0.9688 34 1 1.5319 2.0076 0.7814 35 1 1.5382 -1.6842 -1.3431 36 1 1.8302 -0.1148 -2.1301 37 1 3.1153 -0.8787 -1.1643 38 1 4.3878 -2.3190 2.4888 39 1 3.0252 -1.5985 3.3814 40 1 5.2726 -0.8635 4.2510 41 1 4.2693 0.4912 3.6786 42 1 6.4468 -0.9046 2.0570 43 1 7.2784 0.5030 3.9646 44 1 6.3798 1.8844 3.2919 45 1 8.0286 0.8205 1.2604 46 1 10.1424 1.9172 0.6892 47 1 10.9861 5.3768 6.6401 48 1 8.1983 2.5019 4.4800 49 1 4.7256 1.5514 1.4875 50 1 6.0618 0.9691 0.4650 51 1 4.8924 -1.1482 0.0695 52 1 3.7980 0.1981 -0.3338 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001170345988.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:25:53 Heat of formation + Delta-G solvation = -3.274740 kcal Electronic energy + Delta-G solvation = -30513.035753 eV Core-core repulsion = 26511.765632 eV Total energy + Delta-G solvation = -4001.270121 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.84703 -40.84641 -39.14569 -37.07072 -36.80904 -35.35593 -33.91976 -33.61799 -32.12609 -30.87392 -28.66825 -28.28877 -28.15684 -26.78560 -25.34056 -24.45755 -24.18667 -23.09282 -22.20989 -21.18329 -19.75779 -19.65609 -18.19204 -17.68637 -17.22178 -17.04973 -17.00555 -16.41895 -16.09786 -15.93551 -15.63848 -15.41431 -15.25271 -14.94327 -14.84085 -14.48638 -14.27719 -14.20664 -14.05367 -13.62461 -13.45224 -13.29185 -13.13889 -12.95591 -12.93600 -12.87571 -12.80535 -12.58668 -12.55453 -12.18884 -12.06590 -11.93808 -11.87791 -11.80879 -11.56809 -11.44752 -11.24505 -11.17845 -11.09501 -10.68635 -10.53567 -9.67471 -9.19066 -8.45288 -8.29218 -6.29933 0.90123 1.06384 1.43391 1.53882 1.58133 1.59772 1.99705 2.27806 2.83741 2.87148 3.38150 3.70314 3.72287 3.80683 3.90239 3.91703 4.01629 4.06479 4.09058 4.14227 4.19650 4.31725 4.36868 4.39014 4.50231 4.59764 4.64810 4.65666 4.70255 4.72847 4.77741 4.79924 4.84790 4.88766 4.94129 4.97172 5.00322 5.03595 5.05748 5.18206 5.21047 5.21922 5.31100 5.32820 5.37349 5.44980 5.57056 5.62127 6.26486 6.38889 6.55364 6.62377 6.82314 7.13618 7.15808 7.37466 8.33424 8.53092 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.024087 B = 0.001860 C = 0.001839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.150400 B =15051.045796 C =15219.561996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.085 4.085 3 C -0.157 4.157 4 C -0.155 4.155 5 C 0.516 3.484 6 O -0.590 6.590 7 N -0.606 5.606 8 C 0.112 3.888 9 C -0.120 4.120 10 C -0.082 4.082 11 C 0.142 3.858 12 N -0.732 5.732 13 C -0.001 4.001 14 C 0.085 3.915 15 N -0.587 5.587 16 C 0.337 3.663 17 C -0.458 4.458 18 H 0.081 0.919 19 C 0.025 3.975 20 N -0.766 5.766 21 Si 0.993 3.007 22 H -0.258 1.258 23 H -0.265 1.265 24 H -0.265 1.265 25 N -0.508 5.508 26 C 0.072 3.928 27 C -0.128 4.128 28 C 0.084 3.916 29 H 0.043 0.957 30 H 0.084 0.916 31 H 0.048 0.952 32 H 0.080 0.920 33 H 0.091 0.909 34 H 0.049 0.951 35 H 0.055 0.945 36 H 0.090 0.910 37 H 0.083 0.917 38 H 0.082 0.918 39 H 0.072 0.928 40 H 0.086 0.914 41 H 0.057 0.943 42 H 0.091 0.909 43 H 0.042 0.958 44 H 0.038 0.962 45 H 0.402 0.598 46 H 0.167 0.833 47 H 0.277 0.723 48 H 0.140 0.860 49 H 0.060 0.940 50 H 0.090 0.910 51 H 0.089 0.911 52 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.907 -11.342 -12.450 24.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.088 4.088 3 C -0.214 4.214 4 C -0.212 4.212 5 C 0.306 3.694 6 O -0.470 6.470 7 N -0.338 5.338 8 C -0.010 4.010 9 C -0.159 4.159 10 C -0.101 4.101 11 C 0.017 3.983 12 N -0.369 5.369 13 C -0.108 4.108 14 C -0.089 4.089 15 N -0.306 5.306 16 C 0.093 3.907 17 C -0.496 4.496 18 H 0.099 0.901 19 C -0.196 4.196 20 N -0.391 5.391 21 Si 0.813 3.187 22 H -0.181 1.181 23 H -0.189 1.189 24 H -0.189 1.189 25 N -0.225 5.225 26 C -0.104 4.104 27 C -0.166 4.166 28 C -0.037 4.037 29 H 0.062 0.938 30 H 0.103 0.897 31 H 0.068 0.932 32 H 0.098 0.902 33 H 0.110 0.890 34 H 0.068 0.932 35 H 0.075 0.925 36 H 0.109 0.891 37 H 0.101 0.899 38 H 0.100 0.900 39 H 0.091 0.909 40 H 0.104 0.896 41 H 0.076 0.924 42 H 0.109 0.891 43 H 0.060 0.940 44 H 0.056 0.944 45 H 0.238 0.762 46 H 0.184 0.816 47 H 0.088 0.912 48 H 0.158 0.842 49 H 0.079 0.921 50 H 0.109 0.891 51 H 0.107 0.893 52 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -17.756 -10.927 -11.377 23.751 hybrid contribution -0.315 -0.291 0.291 0.518 sum -18.071 -11.218 -11.086 23.985 Atomic orbital electron populations 1.21658 0.92340 1.02006 1.02277 1.20824 0.97771 0.96996 0.93208 1.22283 1.02512 0.92647 1.03962 1.22274 1.02651 1.00687 0.95565 1.21234 0.81808 0.78731 0.87635 1.90649 1.56158 1.49896 1.50338 1.48175 1.05461 1.60250 1.19897 1.21569 0.97528 0.96197 0.85705 1.21829 0.96097 0.99458 0.98538 1.21209 0.94793 0.98415 0.95653 1.21148 0.86854 0.97612 0.92682 1.43548 1.22307 1.52038 1.18995 1.19151 0.94201 1.00557 0.96854 1.22843 0.89933 0.96630 0.99446 1.68529 1.29231 1.14270 1.18610 1.20100 0.92514 0.93434 0.84687 1.19367 1.05785 1.23674 1.00754 0.90062 1.26892 0.99191 0.97917 0.95592 1.70230 1.28584 1.33597 1.06656 0.85009 0.77546 0.77379 0.78787 1.18127 1.18943 1.18941 1.69181 1.02532 1.16459 1.34356 1.23023 0.97909 0.95570 0.93859 1.22006 0.99041 0.98119 0.97479 1.22625 0.90855 0.98658 0.91557 0.93790 0.89693 0.93241 0.90182 0.89049 0.93229 0.92549 0.89076 0.89876 0.90009 0.90936 0.89592 0.92428 0.89094 0.93995 0.94369 0.76241 0.81636 0.91206 0.84246 0.92113 0.89146 0.89264 0.85722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.89 7.73 71.98 0.56 -1.33 16 2 C -0.08 -1.17 0.75 -52.93 -0.04 -1.21 16 3 C -0.16 -1.76 8.09 71.98 0.58 -1.18 16 4 C -0.15 -1.34 8.09 71.98 0.58 -0.76 16 5 C 0.52 10.58 6.48 87.66 0.57 11.15 16 6 O -0.59 -17.26 15.42 -3.03 -0.05 -17.31 16 7 N -0.61 -9.76 2.97 -818.90 -2.43 -12.19 16 8 C 0.11 1.86 6.41 86.36 0.55 2.42 16 9 C -0.12 -1.91 5.36 30.67 0.16 -1.74 16 10 C -0.08 -1.24 2.19 -10.77 -0.02 -1.27 16 11 C 0.14 3.26 4.33 86.38 0.37 3.63 16 12 N -0.73 -19.68 5.42 -338.16 -1.83 -21.52 16 13 C 0.00 -0.04 6.72 38.93 0.26 0.23 16 14 C 0.09 3.64 11.20 85.16 0.95 4.60 16 15 N -0.59 -31.21 10.34 -193.43 -2.00 -33.21 16 16 C 0.34 19.72 7.35 134.95 0.99 20.72 16 17 C -0.46 -26.63 9.35 23.42 0.22 -26.41 16 18 H 0.08 4.60 7.85 -2.91 -0.02 4.58 16 19 C 0.02 1.32 5.50 85.30 0.47 1.79 16 20 N -0.77 -42.49 11.41 21.84 0.25 -42.24 16 21 Si 0.99 39.88 29.56 68.60 2.03 41.90 16 22 H -0.26 -10.10 7.11 99.48 0.71 -9.39 16 23 H -0.26 -10.11 7.11 99.48 0.71 -9.40 16 24 H -0.26 -10.11 7.11 99.48 0.71 -9.40 16 25 N -0.51 -28.88 7.84 -193.42 -1.52 -30.39 16 26 C 0.07 3.36 10.58 85.17 0.90 4.26 16 27 C -0.13 -1.63 4.91 30.67 0.15 -1.48 16 28 C 0.08 0.86 3.94 86.36 0.34 1.20 16 29 H 0.04 0.80 8.12 -2.39 -0.02 0.78 16 30 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.05 0.85 8.08 -2.39 -0.02 0.83 16 32 H 0.08 0.84 3.87 -2.38 -0.01 0.83 16 33 H 0.09 0.65 8.02 -2.38 -0.02 0.63 16 34 H 0.05 0.70 8.11 -2.39 -0.02 0.68 16 35 H 0.06 0.58 8.11 -2.39 -0.02 0.56 16 36 H 0.09 0.45 8.02 -2.39 -0.02 0.43 16 37 H 0.08 0.56 4.74 -2.39 -0.01 0.55 16 38 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 39 H 0.07 1.51 7.04 -2.39 -0.02 1.50 16 40 H 0.09 1.27 8.14 -2.38 -0.02 1.25 16 41 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 42 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 43 H 0.04 1.06 7.99 -2.39 -0.02 1.04 16 44 H 0.04 0.99 7.98 -2.39 -0.02 0.97 16 45 H 0.40 8.43 7.68 -92.71 -0.71 7.72 16 46 H 0.17 5.52 8.06 -2.91 -0.02 5.50 16 47 H 0.28 13.82 8.29 -92.71 -0.77 13.05 16 48 H 0.14 5.90 6.88 -2.91 -0.02 5.88 16 49 H 0.06 0.94 7.43 -2.39 -0.02 0.92 16 50 H 0.09 1.03 7.15 -2.38 -0.02 1.02 16 51 H 0.09 0.65 8.14 -2.39 -0.02 0.64 16 52 H 0.13 0.94 2.83 -2.39 -0.01 0.93 16 Total: -1.00 -76.39 398.36 2.28 -74.10 By element: Atomic # 1 Polarization: 26.02 SS G_CDS: 0.22 Total: 26.25 kcal Atomic # 6 Polarization: 7.00 SS G_CDS: 7.61 Total: 14.60 kcal Atomic # 7 Polarization: -132.02 SS G_CDS: -7.53 Total: -139.55 kcal Atomic # 8 Polarization: -17.26 SS G_CDS: -0.05 Total: -17.31 kcal Atomic # 14 Polarization: 39.88 SS G_CDS: 2.03 Total: 41.90 kcal Total: -76.39 2.28 -74.10 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170345988.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.828 kcal (2) G-P(sol) polarization free energy of solvation -76.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds