Wall clock time and date at job start Wed Apr 1 2020 04:25:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47580 * 2 1 4 4 C 1.53003 * 109.47129 * 239.99939 * 2 1 3 5 5 C 1.50700 * 109.47065 * 120.00047 * 2 1 3 6 6 O 1.21284 * 120.00161 * 1.86387 * 5 2 1 7 7 N 1.34781 * 119.99943 * 181.86142 * 5 2 1 8 8 C 1.46928 * 120.62639 * 174.95103 * 7 5 2 9 9 C 1.53190 * 108.77506 * 233.62842 * 8 7 5 10 10 C 1.53041 * 109.31259 * 305.36835 * 9 8 7 11 11 C 1.53005 * 109.45733 * 181.38325 * 10 9 8 12 12 N 1.46505 * 109.46966 * 175.00396 * 11 10 9 13 13 C 1.37935 * 119.99890 * 180.02562 * 12 11 10 14 14 N 1.32620 * 120.23542 * 359.44215 * 13 12 11 15 15 C 1.32246 * 120.08382 * 179.76440 * 14 13 12 16 16 C 1.38968 * 120.56789 * 0.52163 * 15 14 13 17 17 N 1.31718 * 120.47647 * 359.73321 * 16 15 14 18 18 C 1.33904 * 119.89021 * 0.02562 * 17 16 15 19 19 C 1.40833 * 120.27157 * 180.02562 * 18 17 16 20 20 H 1.07996 * 119.99585 * 179.97438 * 19 18 17 21 21 C 1.40112 * 120.00145 * 359.97438 * 19 18 17 22 22 N 1.30741 * 120.00191 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00071 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.47181 * 59.99783 * 23 21 19 25 25 H 1.48502 * 109.47125 * 179.97438 * 23 21 19 26 26 H 1.48494 * 109.46969 * 299.99449 * 23 21 19 27 27 C 1.53042 * 109.53757 * 61.36521 * 10 9 8 28 28 C 1.46917 * 120.63437 * 354.97523 * 7 5 2 29 29 H 1.09003 * 109.46889 * 300.00324 * 1 2 3 30 30 H 1.09000 * 109.47080 * 59.99742 * 1 2 3 31 31 H 1.08997 * 109.47499 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47079 * 169.49774 * 3 2 1 33 33 H 1.09002 * 109.46891 * 289.49987 * 3 2 1 34 34 H 1.09001 * 109.46862 * 49.49533 * 3 2 1 35 35 H 1.09009 * 109.46944 * 310.02035 * 4 2 1 36 36 H 1.08997 * 109.47054 * 70.02107 * 4 2 1 37 37 H 1.09004 * 109.47353 * 190.02290 * 4 2 1 38 38 H 1.09008 * 109.58211 * 113.84545 * 8 7 5 39 39 H 1.08993 * 109.58879 * 353.42298 * 8 7 5 40 40 H 1.08999 * 109.49846 * 185.41873 * 9 8 7 41 41 H 1.09003 * 109.52020 * 65.33404 * 9 8 7 42 42 H 1.08992 * 109.46207 * 301.35469 * 10 9 8 43 43 H 1.08997 * 109.46959 * 55.00230 * 11 10 9 44 44 H 1.09000 * 109.47218 * 294.99970 * 11 10 9 45 45 H 0.96997 * 119.99610 * 359.71963 * 12 11 10 46 46 H 1.08004 * 119.71924 * 180.27953 * 15 14 13 47 47 H 1.08003 * 119.76184 * 179.76494 * 16 15 14 48 48 H 0.96993 * 120.00255 * 179.97438 * 22 21 19 49 49 H 1.08996 * 109.49874 * 58.58433 * 27 10 9 50 50 H 1.08996 * 109.49731 * 178.68125 * 27 10 9 51 51 H 1.09005 * 109.58874 * 246.16137 * 28 7 5 52 52 H 1.09006 * 109.58519 * 6.43326 * 28 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 2.0323 -0.7104 1.2305 6 8 1.2447 -1.2009 2.0116 7 7 3.3568 -0.8008 1.4629 8 6 3.8592 -1.3921 2.7106 9 6 4.8191 -0.4001 3.3749 10 6 5.9135 -0.0104 2.3786 11 6 6.8938 0.9538 3.0497 12 7 8.0054 1.2335 2.1374 13 6 9.0203 2.0826 2.5268 14 7 8.9888 2.6570 3.7218 15 6 9.9658 3.4669 4.0939 16 6 11.0273 3.7339 3.2376 17 7 11.0784 3.1795 2.0439 18 6 10.1017 2.3526 1.6498 19 6 10.1485 1.7550 0.3754 20 1 9.3586 1.0885 0.0623 21 6 11.2200 2.0251 -0.4861 22 7 12.1761 2.8324 -0.1071 23 14 11.2825 1.2319 -2.1761 24 1 10.0846 1.6340 -2.9563 25 1 12.5080 1.6771 -2.8869 26 1 11.3043 -0.2456 -2.0289 27 6 5.2803 0.6703 1.1630 28 6 4.3257 -0.3096 0.4737 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 3.1138 1.4481 0.1873 33 1 1.8378 1.8994 -0.9688 34 1 1.5319 2.0075 0.7814 35 1 1.5380 -1.6843 -1.3432 36 1 1.8301 -0.1147 -2.1302 37 1 3.1152 -0.8788 -1.1644 38 1 4.3878 -2.3192 2.4887 39 1 3.0239 -1.5967 3.3803 40 1 5.2728 -0.8638 4.2508 41 1 4.2694 0.4909 3.6784 42 1 6.4469 -0.9048 2.0569 43 1 7.2789 0.5024 3.9640 44 1 6.3799 1.8840 3.2922 45 1 8.0300 0.8181 1.2612 46 1 9.9365 3.9280 5.0701 47 1 11.8163 4.4004 3.5535 48 1 12.9180 3.0191 -0.7034 49 1 4.7260 1.5511 1.4870 50 1 6.0623 0.9685 0.4647 51 1 4.8923 -1.1484 0.0693 52 1 3.7980 0.1979 -0.3338 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001170346038.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:25:49 Heat of formation + Delta-G solvation = 13.365869 kcal Electronic energy + Delta-G solvation = -31230.666864 eV Core-core repulsion = 27230.118334 eV Total energy + Delta-G solvation = -4000.548530 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -40.99030 -39.03650 -38.04999 -36.16212 -35.29633 -33.98258 -32.87993 -31.47894 -31.23018 -29.30120 -27.71606 -27.47368 -26.87098 -25.88457 -24.00795 -23.49068 -22.24283 -21.59198 -20.92965 -20.28914 -18.86038 -17.62591 -16.96632 -16.53478 -16.25920 -15.89935 -15.55380 -15.10404 -14.83819 -14.75134 -14.43569 -14.23296 -14.12413 -13.86352 -13.44616 -13.44428 -13.05437 -12.88167 -12.78013 -12.59278 -12.49284 -12.32224 -12.12674 -12.03294 -12.01806 -11.85377 -11.48240 -11.37478 -11.33855 -11.26187 -11.14553 -10.80813 -10.64820 -10.57841 -10.42086 -10.26492 -9.84155 -9.67530 -9.39467 -9.36953 -8.79289 -8.57680 -7.35633 -6.80490 -6.42977 -4.44547 2.47136 2.64881 2.81456 3.01497 3.01989 3.05613 3.24087 3.85327 4.13119 4.23386 4.44866 4.55386 4.57810 4.70989 4.72092 4.80608 4.93097 4.94794 5.12488 5.20015 5.22996 5.29975 5.37476 5.39589 5.49385 5.53027 5.58133 5.62838 5.67680 5.73009 5.74569 5.80321 5.84314 5.88986 5.93639 5.99399 6.01753 6.07621 6.10514 6.16016 6.27826 6.37023 6.45082 6.51756 6.74899 6.98493 7.05728 7.23828 7.64515 7.94346 8.01930 8.10244 8.38142 8.60609 8.85548 9.45707 9.99003 10.22519 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012314 B = 0.002775 C = 0.002425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2273.296290 B =10088.618458 C =11544.862666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.086 4.086 3 C -0.160 4.160 4 C -0.158 4.158 5 C 0.525 3.475 6 O -0.546 6.546 7 N -0.607 5.607 8 C 0.112 3.888 9 C -0.125 4.125 10 C -0.098 4.098 11 C 0.151 3.849 12 N -0.724 5.724 13 C 0.262 3.738 14 N -0.500 5.500 15 C -0.085 4.085 16 C 0.028 3.972 17 N -0.449 5.449 18 C 0.194 3.806 19 C -0.424 4.424 20 H 0.081 0.919 21 C 0.069 3.931 22 N -0.714 5.714 23 Si 0.906 3.094 24 H -0.264 1.264 25 H -0.277 1.277 26 H -0.265 1.265 27 C -0.132 4.132 28 C 0.083 3.917 29 H 0.060 0.940 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.078 0.922 33 H 0.069 0.931 34 H 0.061 0.939 35 H 0.061 0.939 36 H 0.069 0.931 37 H 0.074 0.926 38 H 0.066 0.934 39 H 0.090 0.910 40 H 0.078 0.922 41 H 0.068 0.932 42 H 0.076 0.924 43 H 0.049 0.951 44 H 0.049 0.951 45 H 0.401 0.599 46 H 0.122 0.878 47 H 0.123 0.877 48 H 0.275 0.725 49 H 0.070 0.930 50 H 0.084 0.916 51 H 0.071 0.929 52 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.036 -6.320 -3.730 17.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.089 4.089 3 C -0.217 4.217 4 C -0.215 4.215 5 C 0.314 3.686 6 O -0.423 6.423 7 N -0.340 5.340 8 C -0.010 4.010 9 C -0.163 4.163 10 C -0.117 4.117 11 C 0.026 3.974 12 N -0.366 5.366 13 C 0.016 3.984 14 N -0.222 5.222 15 C -0.239 4.239 16 C -0.134 4.134 17 N -0.167 5.167 18 C 0.060 3.940 19 C -0.458 4.458 20 H 0.099 0.901 21 C -0.157 4.157 22 N -0.336 5.336 23 Si 0.730 3.270 24 H -0.189 1.189 25 H -0.202 1.202 26 H -0.189 1.189 27 C -0.171 4.171 28 C -0.039 4.039 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.097 0.903 33 H 0.088 0.912 34 H 0.081 0.919 35 H 0.080 0.920 36 H 0.088 0.912 37 H 0.093 0.907 38 H 0.085 0.915 39 H 0.109 0.891 40 H 0.097 0.903 41 H 0.087 0.913 42 H 0.095 0.905 43 H 0.067 0.933 44 H 0.067 0.933 45 H 0.238 0.762 46 H 0.139 0.861 47 H 0.141 0.859 48 H 0.086 0.914 49 H 0.089 0.911 50 H 0.102 0.898 51 H 0.089 0.911 52 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -16.262 -6.358 -3.117 17.737 hybrid contribution 0.302 -0.343 -0.892 1.002 sum -15.959 -6.701 -4.009 17.767 Atomic orbital electron populations 1.21655 0.91981 1.02690 1.01978 1.20766 0.97953 0.96499 0.93703 1.22285 1.02782 0.93533 1.03119 1.22274 1.02425 1.00797 0.96052 1.20606 0.81669 0.79184 0.87177 1.90664 1.54982 1.47962 1.48668 1.48070 1.05439 1.60806 1.19665 1.21607 0.98083 0.95609 0.85706 1.21877 0.96360 0.99799 0.98285 1.21377 0.95763 0.99109 0.95491 1.20925 0.86919 0.96991 0.92597 1.43661 1.22490 1.51936 1.18498 1.19293 0.91073 0.95921 0.92145 1.67315 1.27891 1.11322 1.15664 1.22268 0.95307 1.05349 1.00933 1.23146 0.97603 0.99966 0.92724 1.69489 1.24323 1.09797 1.13053 1.19046 0.88098 0.93201 0.93696 1.19161 1.06006 1.23473 0.97180 0.90108 1.26002 0.95026 0.94618 1.00030 1.70085 1.05884 1.22999 1.34677 0.86410 0.78745 0.80312 0.81531 1.18900 1.20170 1.18919 1.22039 0.98825 0.98205 0.97993 1.22467 0.91318 0.98260 0.91878 0.92048 0.92047 0.92031 0.90334 0.91221 0.91944 0.91999 0.91164 0.90689 0.91528 0.89141 0.90345 0.91293 0.90535 0.93255 0.93271 0.76172 0.86065 0.85901 0.91401 0.91135 0.89789 0.91092 0.87283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.10 7.73 37.16 0.29 -0.82 16 2 C -0.09 -0.77 0.75 -155.66 -0.12 -0.88 16 3 C -0.16 -1.28 8.09 37.16 0.30 -0.98 16 4 C -0.16 -1.13 8.09 37.16 0.30 -0.83 16 5 C 0.53 6.19 6.49 -10.98 -0.07 6.12 16 6 O -0.55 -8.31 15.42 5.55 0.09 -8.23 16 7 N -0.61 -6.30 2.97 -172.77 -0.51 -6.81 16 8 C 0.11 1.16 6.42 -3.71 -0.02 1.13 16 9 C -0.12 -1.29 5.36 -26.61 -0.14 -1.43 16 10 C -0.10 -1.12 2.19 -90.57 -0.20 -1.32 16 11 C 0.15 2.36 5.08 -4.04 -0.02 2.34 16 12 N -0.72 -13.68 5.31 -59.89 -0.32 -14.00 16 13 C 0.26 6.24 7.51 -154.83 -1.16 5.07 16 14 N -0.50 -12.04 9.71 -11.67 -0.11 -12.15 16 15 C -0.08 -1.98 11.22 -17.10 -0.19 -2.17 16 16 C 0.03 0.69 11.21 -17.33 -0.19 0.50 16 17 N -0.45 -12.23 8.03 -10.79 -0.09 -12.32 16 18 C 0.19 5.08 6.56 -84.61 -0.56 4.53 16 19 C -0.42 -10.42 8.89 -37.90 -0.34 -10.75 16 20 H 0.08 1.75 6.12 -52.49 -0.32 1.43 16 21 C 0.07 1.65 5.50 -17.31 -0.10 1.56 16 22 N -0.71 -18.37 11.48 55.56 0.64 -17.73 16 23 Si 0.91 17.30 29.56 -169.99 -5.03 12.28 16 24 H -0.26 -4.90 7.11 56.52 0.40 -4.50 16 25 H -0.28 -5.26 7.11 56.52 0.40 -4.86 16 26 H -0.26 -4.96 7.11 56.52 0.40 -4.56 16 27 C -0.13 -1.38 4.91 -26.61 -0.13 -1.51 16 28 C 0.08 0.73 3.94 -3.72 -0.01 0.71 16 29 H 0.06 0.60 8.12 -51.93 -0.42 0.18 16 30 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.58 8.08 -51.93 -0.42 0.16 16 32 H 0.08 0.64 3.87 -51.93 -0.20 0.44 16 33 H 0.07 0.45 8.01 -51.93 -0.42 0.04 16 34 H 0.06 0.53 8.11 -51.93 -0.42 0.11 16 35 H 0.06 0.46 8.11 -51.92 -0.42 0.04 16 36 H 0.07 0.41 8.02 -51.93 -0.42 -0.01 16 37 H 0.07 0.51 4.74 -51.93 -0.25 0.26 16 38 H 0.07 0.63 8.14 -51.92 -0.42 0.20 16 39 H 0.09 1.04 7.04 -51.93 -0.37 0.67 16 40 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 42 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 43 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 44 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 45 H 0.40 7.03 5.64 -40.82 -0.23 6.80 16 46 H 0.12 2.46 8.06 -52.48 -0.42 2.04 16 47 H 0.12 2.64 8.06 -52.48 -0.42 2.22 16 48 H 0.27 6.43 8.29 -40.82 -0.34 6.09 16 49 H 0.07 0.78 7.43 -51.93 -0.39 0.39 16 50 H 0.08 0.92 7.15 -51.93 -0.37 0.55 16 51 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 52 H 0.11 0.82 2.83 -51.93 -0.15 0.67 16 LS Contribution 396.55 15.07 5.98 5.98 Total: -1.00 -31.40 396.55 -9.87 -41.26 By element: Atomic # 1 Polarization: 18.60 SS G_CDS: -8.15 Total: 10.46 kcal Atomic # 6 Polarization: 3.63 SS G_CDS: -2.37 Total: 1.27 kcal Atomic # 7 Polarization: -62.62 SS G_CDS: -0.39 Total: -63.02 kcal Atomic # 8 Polarization: -8.31 SS G_CDS: 0.09 Total: -8.23 kcal Atomic # 14 Polarization: 17.30 SS G_CDS: -5.03 Total: 12.28 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -31.40 -9.87 -41.26 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170346038.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.631 kcal (2) G-P(sol) polarization free energy of solvation -31.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.265 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds