Wall clock time and date at job start Wed Apr 1 2020 05:39:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47080 * 2 1 4 4 C 1.53002 * 109.47381 * 180.02562 * 3 2 1 5 5 N 1.46497 * 109.47474 * 185.45814 * 4 3 2 6 6 C 1.37097 * 119.99946 * 276.05668 * 5 4 3 7 7 H 1.08006 * 119.99816 * 46.09566 * 6 5 4 8 8 C 1.38947 * 120.00185 * 226.10063 * 6 5 4 9 9 N 1.31407 * 120.00107 * 28.79267 * 8 6 5 10 10 Si 1.86799 * 120.00087 * 208.79714 * 8 6 5 11 11 H 1.48493 * 109.47544 * 89.99657 * 10 8 6 12 12 H 1.48499 * 109.46994 * 209.99875 * 10 8 6 13 13 H 1.48505 * 109.46872 * 329.99592 * 10 8 6 14 14 C 1.34776 * 120.00224 * 96.05702 * 5 4 3 15 15 O 1.21289 * 120.00237 * 186.20474 * 14 5 4 16 16 C 1.50701 * 119.99730 * 6.20544 * 14 5 4 17 17 C 1.53120 * 109.52398 * 270.48265 * 16 14 5 18 18 C 1.53032 * 109.28039 * 182.44175 * 17 16 14 19 19 N 1.46850 * 109.52280 * 59.18178 * 18 17 16 20 20 C 1.38534 * 110.99754 * 174.16116 * 19 18 17 21 21 C 1.39676 * 120.52890 * 180.02562 * 20 19 18 22 22 C 1.38067 * 118.32965 * 180.02562 * 21 20 19 23 23 C 1.50708 * 120.39609 * 180.02562 * 22 21 20 24 24 N 1.32579 * 119.20826 * 359.97438 * 22 21 20 25 25 C 1.31760 * 121.00833 * 0.02562 * 24 22 21 26 26 N 1.31780 * 121.83254 * 359.70959 * 25 24 22 27 27 C 1.46849 * 111.19541 * 298.25798 * 19 18 17 28 28 C 1.53031 * 109.52403 * 61.74412 * 27 19 18 29 29 H 1.08997 * 109.47463 * 60.00021 * 1 2 3 30 30 H 1.09002 * 109.46944 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46943 * 299.99887 * 1 2 3 32 32 H 1.09001 * 109.46943 * 240.00113 * 2 1 3 33 33 H 1.09004 * 109.47172 * 120.00222 * 2 1 3 34 34 H 1.09001 * 109.47141 * 60.00234 * 3 2 1 35 35 H 1.09004 * 109.47300 * 300.00144 * 3 2 1 36 36 H 1.09000 * 109.47125 * 65.45540 * 4 3 2 37 37 H 1.09005 * 109.46886 * 305.45906 * 4 3 2 38 38 H 0.96996 * 120.00378 * 184.97240 * 9 8 6 39 39 H 1.08998 * 109.57533 * 30.64269 * 16 14 5 40 40 H 1.09003 * 109.49998 * 62.50219 * 17 16 14 41 41 H 1.09000 * 109.50615 * 302.38578 * 17 16 14 42 42 H 1.08997 * 109.46339 * 299.16503 * 18 17 16 43 43 H 1.09001 * 109.46369 * 179.19574 * 18 17 16 44 44 H 1.07996 * 120.83299 * 359.97438 * 21 20 19 45 45 H 1.08999 * 109.46860 * 90.00082 * 23 22 21 46 46 H 1.09002 * 109.47089 * 209.99742 * 23 22 21 47 47 H 1.08995 * 109.47111 * 329.99594 * 23 22 21 48 48 H 1.07994 * 119.08395 * 179.97438 * 25 24 22 49 49 H 1.08999 * 109.46008 * 181.76088 * 27 19 18 50 50 H 1.09004 * 109.45979 * 301.72427 * 27 19 18 51 51 H 1.09000 * 109.50802 * 60.76022 * 28 27 19 52 52 H 1.08997 * 109.50562 * 180.87717 * 28 27 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0584 2.8174 0.1307 6 6 4.1683 3.6148 -0.9791 7 1 3.3601 3.6594 -1.6942 8 6 5.3194 4.3656 -1.1840 9 7 6.4710 3.9449 -0.7111 10 14 5.2299 5.9729 -2.1315 11 1 4.9682 7.0896 -1.1885 12 1 6.5187 6.2075 -2.8311 13 1 4.1318 5.8992 -3.1285 14 6 4.3997 3.2985 1.3426 15 8 4.6961 4.4677 1.4695 16 6 4.4129 2.3836 2.5400 17 6 3.0317 2.3857 3.2009 18 6 3.0682 1.5031 4.4506 19 7 4.0783 2.0164 5.3847 20 6 4.0475 1.3195 6.5815 21 6 4.9281 1.6457 7.6155 22 6 4.8582 0.9211 8.7887 23 6 5.7858 1.2340 9.9345 24 7 3.9647 -0.0525 8.8955 25 6 3.1476 -0.3360 7.9015 26 7 3.1757 0.3326 6.7663 27 6 5.4200 1.9797 4.7887 28 6 5.4537 2.8766 3.5492 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6766 1.9564 -0.8900 36 1 3.9330 1.0158 -0.9357 37 1 3.9337 0.8462 0.8362 38 1 7.2608 4.5023 -0.7908 39 1 4.6636 1.3712 2.2233 40 1 2.2928 1.9952 2.5011 41 1 2.7645 3.4042 3.4825 42 1 3.3219 0.4818 4.1666 43 1 2.0901 1.5138 4.9315 44 1 5.6461 2.4440 7.4998 45 1 5.3237 1.9784 10.5831 46 1 5.9786 0.3251 10.5045 47 1 6.7257 1.6248 9.5448 48 1 2.4320 -1.1358 8.0221 49 1 6.1499 2.3366 5.5152 50 1 5.6626 0.9561 4.5031 51 1 5.2247 3.9029 3.8361 52 1 6.4452 2.8369 3.0981 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001177557031.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:39:02 Heat of formation + Delta-G solvation = 13.753108 kcal Electronic energy + Delta-G solvation = -31550.616495 eV Core-core repulsion = 27550.084756 eV Total energy + Delta-G solvation = -4000.531738 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -41.37778 -39.48916 -37.94768 -35.52045 -34.63831 -33.76241 -33.31930 -31.77922 -30.88010 -30.85584 -28.55296 -28.18243 -26.01353 -24.62048 -24.08378 -22.85631 -22.66907 -21.81847 -20.71947 -20.21870 -18.68286 -17.76656 -17.27726 -16.77176 -15.74061 -15.54935 -15.46084 -15.30025 -15.00506 -14.70457 -14.60598 -14.29960 -13.92972 -13.81051 -13.50347 -13.29076 -13.20404 -13.03867 -12.82315 -12.58726 -12.57167 -12.34427 -12.13627 -11.82833 -11.53847 -11.20597 -11.04252 -11.02352 -10.95612 -10.89884 -10.81107 -10.69546 -10.65837 -10.46870 -10.32524 -10.22405 -10.01393 -9.89141 -9.79775 -9.36969 -8.58192 -8.51213 -8.08751 -7.18629 -6.19408 -3.87922 0.84897 0.97818 3.26365 3.33933 3.41764 3.47204 3.67743 3.92880 4.08868 4.11176 4.34279 4.59032 4.77453 4.87557 4.93582 5.03999 5.09582 5.14938 5.23004 5.24514 5.25310 5.30169 5.41117 5.41694 5.44041 5.48500 5.51383 5.60797 5.64250 5.70438 5.77633 5.83417 5.92830 6.02072 6.03826 6.09065 6.11169 6.15022 6.18937 6.28917 6.38420 6.41466 6.47062 6.53268 6.62725 6.72791 6.75353 6.94869 6.99634 7.09947 7.64242 8.04667 8.27456 9.05986 9.16708 9.64121 10.26188 10.87874 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012181 B = 0.003058 C = 0.002531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2298.063568 B = 9155.385215 C =11058.222408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.122 4.122 3 C -0.135 4.135 4 C 0.103 3.897 5 N -0.451 5.451 6 C -0.351 4.351 7 H 0.076 0.924 8 C 0.085 3.915 9 N -0.839 5.839 10 Si 0.899 3.101 11 H -0.275 1.275 12 H -0.290 1.290 13 H -0.273 1.273 14 C 0.494 3.506 15 O -0.553 6.553 16 C -0.107 4.107 17 C -0.111 4.111 18 C 0.072 3.928 19 N -0.470 5.470 20 C 0.366 3.634 21 C -0.247 4.247 22 C 0.186 3.814 23 C -0.105 4.105 24 N -0.550 5.550 25 C 0.323 3.677 26 N -0.563 5.563 27 C 0.065 3.935 28 C -0.097 4.097 29 H 0.052 0.948 30 H 0.048 0.952 31 H 0.052 0.948 32 H 0.059 0.941 33 H 0.057 0.943 34 H 0.060 0.940 35 H 0.064 0.936 36 H 0.064 0.936 37 H 0.055 0.945 38 H 0.264 0.736 39 H 0.077 0.923 40 H 0.081 0.919 41 H 0.075 0.925 42 H 0.052 0.948 43 H 0.086 0.914 44 H 0.146 0.854 45 H 0.084 0.916 46 H 0.081 0.919 47 H 0.079 0.921 48 H 0.194 0.806 49 H 0.083 0.917 50 H 0.048 0.952 51 H 0.084 0.916 52 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.162 -9.931 14.704 18.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.160 4.160 3 C -0.173 4.173 4 C -0.021 4.021 5 N -0.172 5.172 6 C -0.477 4.477 7 H 0.093 0.907 8 C -0.125 4.125 9 N -0.472 5.472 10 Si 0.726 3.274 11 H -0.201 1.201 12 H -0.216 1.216 13 H -0.198 1.198 14 C 0.281 3.719 15 O -0.433 6.433 16 C -0.129 4.129 17 C -0.149 4.149 18 C -0.055 4.055 19 N -0.187 5.187 20 C 0.126 3.874 21 C -0.272 4.272 22 C 0.043 3.957 23 C -0.162 4.162 24 N -0.268 5.268 25 C 0.033 3.967 26 N -0.284 5.284 27 C -0.060 4.060 28 C -0.135 4.135 29 H 0.071 0.929 30 H 0.067 0.933 31 H 0.071 0.929 32 H 0.078 0.922 33 H 0.076 0.924 34 H 0.079 0.921 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.073 0.927 38 H 0.074 0.926 39 H 0.095 0.905 40 H 0.099 0.901 41 H 0.094 0.906 42 H 0.070 0.930 43 H 0.104 0.896 44 H 0.164 0.836 45 H 0.102 0.898 46 H 0.100 0.900 47 H 0.098 0.902 48 H 0.210 0.790 49 H 0.102 0.898 50 H 0.066 0.934 51 H 0.103 0.897 52 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -4.513 -9.498 14.809 18.163 hybrid contribution 0.679 0.701 -0.746 1.228 sum -3.834 -8.798 14.063 17.026 Atomic orbital electron populations 1.21760 0.96368 1.00894 1.01718 1.21486 0.95380 0.97513 1.01627 1.22104 0.97306 0.95578 1.02359 1.21614 0.92677 0.86837 1.01020 1.43269 1.59560 1.08974 1.05440 1.18838 1.00625 1.25803 1.02468 0.90669 1.25138 0.93698 0.98359 0.95298 1.69997 0.98789 1.34547 1.43885 0.86437 0.77116 0.84694 0.79197 1.20107 1.21584 1.19826 1.19774 0.81137 0.87857 0.83106 1.90500 1.50552 1.17796 1.84417 1.21347 0.95784 1.00140 0.95589 1.21727 0.96856 1.01106 0.95245 1.22059 0.94777 0.96915 0.91724 1.58782 1.08316 1.48216 1.03341 1.20234 0.88678 0.86104 0.92417 1.22199 1.04866 1.05258 0.94914 1.21490 0.91680 0.88779 0.93796 1.20762 0.97140 1.03179 0.95167 1.68264 1.07292 1.18761 1.32529 1.24729 0.93528 0.95310 0.83154 1.68423 1.25844 1.08028 1.26103 1.22371 0.86156 1.00076 0.97440 1.21428 0.99721 1.00016 0.92302 0.92905 0.93306 0.92929 0.92193 0.92374 0.92110 0.91762 0.91786 0.92684 0.92608 0.90465 0.90099 0.90636 0.92974 0.89554 0.83614 0.89778 0.90040 0.90187 0.78973 0.89819 0.93415 0.89737 0.90292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.68 9.91 37.16 0.37 -1.32 16 2 C -0.12 -1.54 5.93 -26.73 -0.16 -1.70 16 3 C -0.13 -2.16 5.29 -26.73 -0.14 -2.30 16 4 C 0.10 1.96 5.29 -4.04 -0.02 1.94 16 5 N -0.45 -10.92 2.49 -114.81 -0.29 -11.20 16 6 C -0.35 -9.56 9.01 -14.93 -0.13 -9.70 16 7 H 0.08 2.01 7.98 -52.48 -0.42 1.59 16 8 C 0.09 2.39 4.09 -17.47 -0.07 2.32 16 9 N -0.84 -24.34 12.91 55.50 0.72 -23.62 16 10 Si 0.90 22.07 29.64 -169.99 -5.04 17.04 16 11 H -0.28 -7.03 7.11 56.52 0.40 -6.62 16 12 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 13 H -0.27 -6.44 7.11 56.52 0.40 -6.03 16 14 C 0.49 11.90 6.05 -10.98 -0.07 11.84 16 15 O -0.55 -15.72 14.78 5.55 0.08 -15.64 16 16 C -0.11 -1.95 1.87 -91.65 -0.17 -2.12 16 17 C -0.11 -1.75 5.36 -26.65 -0.14 -1.89 16 18 C 0.07 0.99 4.67 -3.83 -0.02 0.97 16 19 N -0.47 -6.50 4.68 -173.05 -0.81 -7.31 16 20 C 0.37 4.83 6.41 -154.79 -0.99 3.84 16 21 C -0.25 -2.81 8.95 -39.11 -0.35 -3.16 16 22 C 0.19 1.98 6.81 -82.33 -0.56 1.42 16 23 C -0.11 -0.74 10.21 36.01 0.37 -0.37 16 24 N -0.55 -6.44 10.37 -10.88 -0.11 -6.55 16 25 C 0.32 3.64 12.28 -92.20 -1.13 2.50 16 26 N -0.56 -7.32 8.85 -13.81 -0.12 -7.44 16 27 C 0.06 0.87 5.25 -3.84 -0.02 0.85 16 28 C -0.10 -1.64 5.01 -26.65 -0.13 -1.77 16 29 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.06 0.98 5.76 -51.93 -0.30 0.69 16 35 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 36 H 0.06 1.26 8.09 -51.93 -0.42 0.84 16 37 H 0.05 0.95 5.54 -51.93 -0.29 0.66 16 38 H 0.26 7.37 8.32 -40.82 -0.34 7.03 16 39 H 0.08 1.34 6.03 -51.93 -0.31 1.03 16 40 H 0.08 1.22 5.37 -51.93 -0.28 0.94 16 41 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 42 H 0.05 0.71 8.13 -51.93 -0.42 0.29 16 43 H 0.09 1.18 7.72 -51.93 -0.40 0.77 16 44 H 0.15 1.41 7.23 -52.49 -0.38 1.03 16 45 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 46 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 47 H 0.08 0.44 8.09 -51.93 -0.42 0.02 16 48 H 0.19 1.52 8.06 -52.49 -0.42 1.10 16 49 H 0.08 0.96 6.75 -51.93 -0.35 0.61 16 50 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 51 H 0.08 1.58 7.78 -51.93 -0.40 1.18 16 52 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 LS Contribution 407.82 15.07 6.15 6.15 Total: -1.00 -33.32 407.82 -11.41 -44.73 By element: Atomic # 1 Polarization: 11.12 SS G_CDS: -8.60 Total: 2.52 kcal Atomic # 6 Polarization: 4.71 SS G_CDS: -3.38 Total: 1.33 kcal Atomic # 7 Polarization: -55.51 SS G_CDS: -0.61 Total: -56.13 kcal Atomic # 8 Polarization: -15.72 SS G_CDS: 0.08 Total: -15.64 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.04 Total: 17.04 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -33.32 -11.41 -44.73 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001177557031.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.484 kcal (2) G-P(sol) polarization free energy of solvation -33.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.731 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds