Wall clock time and date at job start Wed Apr 1 2020 05:39:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47080 * 2 1 4 4 C 1.53002 * 109.47381 * 180.02562 * 3 2 1 5 5 N 1.46497 * 109.47474 * 185.45814 * 4 3 2 6 6 C 1.37097 * 119.99946 * 276.05668 * 5 4 3 7 7 H 1.08006 * 119.99816 * 46.09566 * 6 5 4 8 8 C 1.38947 * 120.00185 * 226.10063 * 6 5 4 9 9 N 1.31407 * 120.00107 * 28.79267 * 8 6 5 10 10 Si 1.86799 * 120.00087 * 208.79714 * 8 6 5 11 11 H 1.48493 * 109.47544 * 89.99657 * 10 8 6 12 12 H 1.48499 * 109.46994 * 209.99875 * 10 8 6 13 13 H 1.48505 * 109.46872 * 329.99592 * 10 8 6 14 14 C 1.34776 * 120.00224 * 96.05702 * 5 4 3 15 15 O 1.21289 * 120.00237 * 186.20474 * 14 5 4 16 16 C 1.50701 * 119.99730 * 6.20544 * 14 5 4 17 17 C 1.53120 * 109.52398 * 270.48265 * 16 14 5 18 18 C 1.53032 * 109.28039 * 182.44175 * 17 16 14 19 19 N 1.46850 * 109.52280 * 59.18178 * 18 17 16 20 20 C 1.38534 * 110.99754 * 174.16116 * 19 18 17 21 21 C 1.39676 * 120.52890 * 180.02562 * 20 19 18 22 22 C 1.38067 * 118.32965 * 180.02562 * 21 20 19 23 23 C 1.50708 * 120.39609 * 180.02562 * 22 21 20 24 24 N 1.32579 * 119.20826 * 359.97438 * 22 21 20 25 25 C 1.31760 * 121.00833 * 0.02562 * 24 22 21 26 26 N 1.31780 * 121.83254 * 359.70959 * 25 24 22 27 27 C 1.46849 * 111.19541 * 298.25798 * 19 18 17 28 28 C 1.53031 * 109.52403 * 61.74412 * 27 19 18 29 29 H 1.08997 * 109.47463 * 60.00021 * 1 2 3 30 30 H 1.09002 * 109.46944 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46943 * 299.99887 * 1 2 3 32 32 H 1.09001 * 109.46943 * 240.00113 * 2 1 3 33 33 H 1.09004 * 109.47172 * 120.00222 * 2 1 3 34 34 H 1.09001 * 109.47141 * 60.00234 * 3 2 1 35 35 H 1.09004 * 109.47300 * 300.00144 * 3 2 1 36 36 H 1.09000 * 109.47125 * 65.45540 * 4 3 2 37 37 H 1.09005 * 109.46886 * 305.45906 * 4 3 2 38 38 H 0.96996 * 120.00378 * 184.97240 * 9 8 6 39 39 H 1.08998 * 109.57533 * 30.64269 * 16 14 5 40 40 H 1.09003 * 109.49998 * 62.50219 * 17 16 14 41 41 H 1.09000 * 109.50615 * 302.38578 * 17 16 14 42 42 H 1.08997 * 109.46339 * 299.16503 * 18 17 16 43 43 H 1.09001 * 109.46369 * 179.19574 * 18 17 16 44 44 H 1.07996 * 120.83299 * 359.97438 * 21 20 19 45 45 H 1.08999 * 109.46860 * 90.00082 * 23 22 21 46 46 H 1.09002 * 109.47089 * 209.99742 * 23 22 21 47 47 H 1.08995 * 109.47111 * 329.99594 * 23 22 21 48 48 H 1.07994 * 119.08395 * 179.97438 * 25 24 22 49 49 H 1.08999 * 109.46008 * 181.76088 * 27 19 18 50 50 H 1.09004 * 109.45979 * 301.72427 * 27 19 18 51 51 H 1.09000 * 109.50802 * 60.76022 * 28 27 19 52 52 H 1.08997 * 109.50562 * 180.87717 * 28 27 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0584 2.8174 0.1307 6 6 4.1683 3.6148 -0.9791 7 1 3.3601 3.6594 -1.6942 8 6 5.3194 4.3656 -1.1840 9 7 6.4710 3.9449 -0.7111 10 14 5.2299 5.9729 -2.1315 11 1 4.9682 7.0896 -1.1885 12 1 6.5187 6.2075 -2.8311 13 1 4.1318 5.8992 -3.1285 14 6 4.3997 3.2985 1.3426 15 8 4.6961 4.4677 1.4695 16 6 4.4129 2.3836 2.5400 17 6 3.0317 2.3857 3.2009 18 6 3.0682 1.5031 4.4506 19 7 4.0783 2.0164 5.3847 20 6 4.0475 1.3195 6.5815 21 6 4.9281 1.6457 7.6155 22 6 4.8582 0.9211 8.7887 23 6 5.7858 1.2340 9.9345 24 7 3.9647 -0.0525 8.8955 25 6 3.1476 -0.3360 7.9015 26 7 3.1757 0.3326 6.7663 27 6 5.4200 1.9797 4.7887 28 6 5.4537 2.8766 3.5492 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6766 1.9564 -0.8900 36 1 3.9330 1.0158 -0.9357 37 1 3.9337 0.8462 0.8362 38 1 7.2608 4.5023 -0.7908 39 1 4.6636 1.3712 2.2233 40 1 2.2928 1.9952 2.5011 41 1 2.7645 3.4042 3.4825 42 1 3.3219 0.4818 4.1666 43 1 2.0901 1.5138 4.9315 44 1 5.6461 2.4440 7.4998 45 1 5.3237 1.9784 10.5831 46 1 5.9786 0.3251 10.5045 47 1 6.7257 1.6248 9.5448 48 1 2.4320 -1.1358 8.0221 49 1 6.1499 2.3366 5.5152 50 1 5.6626 0.9561 4.5031 51 1 5.2247 3.9029 3.8361 52 1 6.4452 2.8369 3.0981 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001177557031.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:39:00 Heat of formation + Delta-G solvation = -4.630871 kcal Electronic energy + Delta-G solvation = -31551.413684 eV Core-core repulsion = 27550.084756 eV Total energy + Delta-G solvation = -4001.328928 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -42.29718 -40.96098 -39.35304 -37.07008 -35.79408 -35.12043 -34.56758 -33.58281 -32.07948 -31.94165 -29.60588 -29.30691 -27.59386 -25.94272 -25.28329 -24.21712 -23.78562 -22.90900 -21.91956 -21.63143 -20.29424 -18.78634 -18.58941 -18.17234 -17.43045 -16.93875 -16.54166 -16.43148 -16.34375 -15.92473 -15.74407 -15.64938 -15.50289 -15.04848 -14.70605 -14.49575 -14.44565 -13.99996 -13.91106 -13.76877 -13.73780 -13.55106 -13.34243 -13.12608 -13.09597 -12.87495 -12.72354 -12.46423 -12.29363 -12.24761 -12.13772 -12.10631 -11.92824 -11.76391 -11.71201 -11.51022 -11.41103 -11.15195 -10.72738 -10.64577 -10.25250 -10.03814 -9.48839 -9.17812 -8.30260 -6.01620 0.01106 0.10402 1.33512 1.44643 1.46666 2.21170 2.28413 2.42216 2.81462 3.03275 3.20698 3.23714 3.25800 3.61886 3.76451 3.84351 3.90701 4.03747 4.09164 4.14903 4.21035 4.26953 4.30875 4.33749 4.36208 4.44248 4.51157 4.56099 4.61631 4.66918 4.76480 4.79333 4.80441 4.84445 4.87708 4.92792 4.97641 5.02736 5.07530 5.09961 5.17159 5.21539 5.32408 5.40526 5.43001 5.45637 5.50469 5.52018 5.62952 5.99434 6.18940 6.19789 7.02147 7.18787 7.19460 7.66925 8.31277 8.75787 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012181 B = 0.003058 C = 0.002531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2298.063568 B = 9155.385215 C =11058.222408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.115 4.115 3 C -0.124 4.124 4 C 0.102 3.898 5 N -0.466 5.466 6 C -0.364 4.364 7 H 0.073 0.927 8 C 0.039 3.961 9 N -0.871 5.871 10 Si 0.951 3.049 11 H -0.293 1.293 12 H -0.280 1.280 13 H -0.256 1.256 14 C 0.483 3.517 15 O -0.606 6.606 16 C -0.096 4.096 17 C -0.099 4.099 18 C 0.084 3.916 19 N -0.481 5.481 20 C 0.349 3.651 21 C -0.252 4.252 22 C 0.183 3.817 23 C -0.103 4.103 24 N -0.562 5.562 25 C 0.317 3.683 26 N -0.578 5.578 27 C 0.077 3.923 28 C -0.090 4.090 29 H 0.047 0.953 30 H 0.067 0.933 31 H 0.054 0.946 32 H 0.063 0.937 33 H 0.073 0.927 34 H 0.059 0.941 35 H 0.045 0.955 36 H 0.054 0.946 37 H 0.077 0.923 38 H 0.261 0.739 39 H 0.090 0.910 40 H 0.089 0.911 41 H 0.054 0.946 42 H 0.060 0.940 43 H 0.091 0.909 44 H 0.160 0.840 45 H 0.095 0.905 46 H 0.085 0.915 47 H 0.097 0.903 48 H 0.221 0.779 49 H 0.105 0.895 50 H 0.057 0.943 51 H 0.060 0.940 52 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.929 -11.872 16.387 20.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.153 4.153 3 C -0.162 4.162 4 C -0.021 4.021 5 N -0.187 5.187 6 C -0.491 4.491 7 H 0.091 0.909 8 C -0.167 4.167 9 N -0.506 5.506 10 Si 0.776 3.224 11 H -0.220 1.220 12 H -0.206 1.206 13 H -0.180 1.180 14 C 0.272 3.728 15 O -0.490 6.490 16 C -0.118 4.118 17 C -0.138 4.138 18 C -0.042 4.042 19 N -0.198 5.198 20 C 0.110 3.890 21 C -0.277 4.277 22 C 0.039 3.961 23 C -0.160 4.160 24 N -0.280 5.280 25 C 0.028 3.972 26 N -0.299 5.299 27 C -0.048 4.048 28 C -0.129 4.129 29 H 0.066 0.934 30 H 0.086 0.914 31 H 0.073 0.927 32 H 0.082 0.918 33 H 0.092 0.908 34 H 0.077 0.923 35 H 0.064 0.936 36 H 0.073 0.927 37 H 0.095 0.905 38 H 0.071 0.929 39 H 0.108 0.892 40 H 0.107 0.893 41 H 0.073 0.927 42 H 0.078 0.922 43 H 0.109 0.891 44 H 0.178 0.822 45 H 0.114 0.886 46 H 0.104 0.896 47 H 0.116 0.884 48 H 0.237 0.763 49 H 0.124 0.876 50 H 0.075 0.925 51 H 0.079 0.921 52 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -5.307 -11.482 16.473 20.769 hybrid contribution 0.874 1.268 -1.212 1.960 sum -4.433 -10.214 15.261 18.891 Atomic orbital electron populations 1.21742 0.95033 1.02152 1.01635 1.21442 0.96474 0.94792 1.02609 1.21978 0.94823 0.98075 1.01368 1.21782 0.94638 0.84260 1.01423 1.43556 1.59438 1.10763 1.04937 1.19075 1.00260 1.26663 1.03129 0.90937 1.25866 0.93619 1.00784 0.96475 1.70053 0.99158 1.35348 1.46062 0.85615 0.77983 0.80651 0.78121 1.22019 1.20569 1.17951 1.20738 0.79526 0.88051 0.84456 1.90454 1.52676 1.20354 1.85494 1.21282 0.97912 0.99046 0.93528 1.21617 0.95186 1.00605 0.96353 1.21900 0.95285 0.96460 0.90590 1.58756 1.08152 1.49143 1.03732 1.20314 0.89714 0.86718 0.92291 1.22400 1.04874 1.05707 0.94702 1.22060 0.91551 0.87971 0.94481 1.20871 0.97183 1.03771 0.94181 1.68360 1.07686 1.19243 1.32706 1.25316 0.93777 0.95517 0.82590 1.68411 1.26096 1.08413 1.27019 1.22229 0.86914 0.99534 0.96123 1.21297 0.98277 0.99638 0.93643 0.93378 0.91366 0.92722 0.91779 0.90840 0.92296 0.93590 0.92707 0.90523 0.92938 0.89154 0.89314 0.92708 0.92156 0.89068 0.82195 0.88630 0.89608 0.88431 0.76272 0.87646 0.92488 0.92127 0.91932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.96 9.91 71.98 0.71 -2.25 16 2 C -0.12 -2.65 5.93 30.59 0.18 -2.47 16 3 C -0.12 -3.87 5.29 30.59 0.16 -3.71 16 4 C 0.10 3.86 5.29 86.38 0.46 4.31 16 5 N -0.47 -23.05 2.49 -635.54 -1.58 -24.63 16 6 C -0.36 -20.36 9.01 84.04 0.76 -19.60 16 7 H 0.07 3.97 7.98 -2.91 -0.02 3.95 16 8 C 0.04 2.25 4.09 84.93 0.35 2.60 16 9 N -0.87 -52.13 12.91 21.66 0.28 -51.85 16 10 Si 0.95 46.45 29.64 68.60 2.03 48.48 16 11 H -0.29 -15.09 7.11 99.48 0.71 -14.38 16 12 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 13 H -0.26 -11.61 7.11 99.48 0.71 -10.90 16 14 C 0.48 23.94 6.05 87.66 0.53 24.47 16 15 O -0.61 -36.02 14.78 -3.06 -0.05 -36.07 16 16 C -0.10 -3.51 1.87 -11.46 -0.02 -3.53 16 17 C -0.10 -3.08 5.36 30.65 0.16 -2.91 16 18 C 0.08 2.17 4.67 86.32 0.40 2.57 16 19 N -0.48 -12.56 4.68 -701.41 -3.28 -15.85 16 20 C 0.35 8.51 6.41 133.19 0.85 9.36 16 21 C -0.25 -5.14 8.95 22.58 0.20 -4.94 16 22 C 0.18 3.43 6.81 42.41 0.29 3.72 16 23 C -0.10 -1.15 10.21 71.24 0.73 -0.42 16 24 N -0.56 -11.81 10.37 -188.35 -1.95 -13.76 16 25 C 0.32 6.40 12.28 180.90 2.22 8.62 16 26 N -0.58 -13.74 8.85 -197.60 -1.75 -15.49 16 27 C 0.08 1.95 5.25 86.32 0.45 2.41 16 28 C -0.09 -3.10 5.01 30.65 0.15 -2.94 16 29 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 33 H 0.07 1.50 8.14 -2.38 -0.02 1.48 16 34 H 0.06 1.86 5.76 -2.39 -0.01 1.85 16 35 H 0.05 1.59 8.14 -2.38 -0.02 1.57 16 36 H 0.05 2.16 8.09 -2.39 -0.02 2.14 16 37 H 0.08 2.54 5.54 -2.38 -0.01 2.52 16 38 H 0.26 15.09 8.32 -92.71 -0.77 14.32 16 39 H 0.09 3.05 6.03 -2.39 -0.01 3.03 16 40 H 0.09 2.58 5.37 -2.39 -0.01 2.56 16 41 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 42 H 0.06 1.48 8.13 -2.39 -0.02 1.46 16 43 H 0.09 2.31 7.72 -2.39 -0.02 2.29 16 44 H 0.16 2.69 7.23 -2.91 -0.02 2.67 16 45 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 46 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 47 H 0.10 0.76 8.09 -2.39 -0.02 0.74 16 48 H 0.22 2.87 8.06 -2.91 -0.02 2.85 16 49 H 0.11 2.21 6.75 -2.39 -0.02 2.20 16 50 H 0.06 1.36 8.14 -2.38 -0.02 1.34 16 51 H 0.06 2.36 7.78 -2.39 -0.02 2.34 16 52 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 Total: -1.00 -74.93 407.82 3.20 -71.74 By element: Atomic # 1 Polarization: 21.24 SS G_CDS: 0.90 Total: 22.14 kcal Atomic # 6 Polarization: 6.69 SS G_CDS: 8.59 Total: 15.29 kcal Atomic # 7 Polarization: -113.29 SS G_CDS: -8.29 Total: -121.58 kcal Atomic # 8 Polarization: -36.02 SS G_CDS: -0.05 Total: -36.07 kcal Atomic # 14 Polarization: 46.45 SS G_CDS: 2.03 Total: 48.48 kcal Total: -74.93 3.20 -71.74 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001177557031.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.104 kcal (2) G-P(sol) polarization free energy of solvation -74.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds