Wall clock time and date at job start Wed Apr 1 2020 03:55:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.47082 * 2 1 4 4 C 1.52998 * 109.47217 * 119.99989 * 2 1 3 5 5 C 1.52993 * 109.47083 * 174.99608 * 4 2 1 6 6 H 1.09001 * 109.46944 * 55.00320 * 5 4 2 7 7 C 1.50704 * 109.47130 * 175.00098 * 5 4 2 8 8 O 1.21279 * 120.00190 * 359.97438 * 7 5 4 9 9 N 1.34778 * 120.00098 * 180.02562 * 7 5 4 10 10 C 1.47352 * 125.52175 * 359.97438 * 9 7 5 11 11 C 1.54945 * 104.90129 * 156.77424 * 10 9 7 12 12 C 1.54790 * 101.45647 * 37.25277 * 11 10 9 13 13 H 1.08997 * 112.84920 * 86.23331 * 12 11 10 14 14 C 1.53513 * 109.68408 * 212.92440 * 12 11 10 15 15 N 1.46654 * 107.05261 * 84.82746 * 14 12 11 16 16 C 1.36932 * 125.29109 * 197.35701 * 15 14 12 17 17 H 1.08002 * 119.99921 * 0.02562 * 16 15 14 18 18 C 1.38811 * 119.99980 * 180.02562 * 16 15 14 19 19 N 1.31621 * 120.00173 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 120.00137 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.46996 * 59.99534 * 20 18 16 22 22 H 1.48497 * 109.47374 * 180.02562 * 20 18 16 23 23 H 1.48499 * 109.47074 * 300.00233 * 20 18 16 24 24 C 1.46495 * 109.42081 * 17.38307 * 15 14 12 25 25 C 1.48615 * 125.40146 * 180.71044 * 9 7 5 26 26 H 1.08991 * 113.54382 * 56.37268 * 25 9 7 27 27 N 1.46501 * 109.47371 * 294.99972 * 5 4 2 28 28 C 1.36886 * 126.39417 * 119.71439 * 27 5 4 29 29 C 1.34677 * 106.81503 * 179.84387 * 28 27 5 30 30 N 1.34128 * 108.01564 * 0.42137 * 29 28 27 31 31 C 1.30490 * 109.26161 * 359.73058 * 30 29 28 32 32 H 1.09002 * 109.46773 * 299.99726 * 1 2 3 33 33 H 1.08994 * 109.47086 * 60.00059 * 1 2 3 34 34 H 1.09005 * 109.47480 * 180.02562 * 1 2 3 35 35 H 1.08997 * 109.46547 * 239.99884 * 2 1 3 36 36 H 1.08996 * 109.46859 * 60.00135 * 3 2 1 37 37 H 1.09000 * 109.46876 * 180.02562 * 3 2 1 38 38 H 1.08999 * 109.46661 * 299.99862 * 3 2 1 39 39 H 1.09010 * 109.47113 * 54.99721 * 4 2 1 40 40 H 1.09000 * 109.47301 * 295.00463 * 4 2 1 41 41 H 1.08992 * 110.35713 * 37.91394 * 10 9 7 42 42 H 1.09005 * 110.44088 * 275.67505 * 10 9 7 43 43 H 1.09003 * 111.03075 * 279.20527 * 11 10 9 44 44 H 1.09005 * 111.06417 * 155.30749 * 11 10 9 45 45 H 1.08997 * 109.92402 * 325.47850 * 14 12 11 46 46 H 1.09000 * 109.91813 * 204.17793 * 14 12 11 47 47 H 0.96992 * 120.00074 * 179.97438 * 19 18 16 48 48 H 1.09002 * 109.71712 * 117.76499 * 24 15 14 49 49 H 1.09001 * 109.71175 * 238.36286 * 24 15 14 50 50 H 1.07999 * 126.59132 * 359.97438 * 28 27 5 51 51 H 1.07993 * 125.99118 * 180.11735 * 29 28 27 52 52 H 1.08006 * 125.65442 * 180.02562 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 3.5648 -0.8311 1.1879 6 1 3.9954 0.1611 1.0526 7 6 4.0774 -1.4303 2.4721 8 8 3.2997 -1.7387 3.3502 9 7 5.4001 -1.6226 2.6453 10 6 6.4488 -1.2934 1.6640 11 6 7.7406 -1.1245 2.5028 12 6 7.5594 -2.2289 3.5721 13 1 7.9241 -3.2016 3.2420 14 6 8.1897 -1.7750 4.8962 15 7 7.1850 -0.9683 5.5966 16 6 7.4416 -0.1087 6.6311 17 1 8.4519 0.0158 6.9918 18 6 6.4031 0.6026 7.2163 19 7 5.1718 0.4512 6.7765 20 14 6.7532 1.7758 8.6272 21 1 7.6977 2.8279 8.1733 22 1 5.4849 2.4070 9.0725 23 1 7.3553 1.0246 9.7578 24 6 5.8640 -1.2255 5.0177 25 6 6.0331 -2.2156 3.8521 26 1 5.6539 -3.2069 4.1001 27 7 3.9479 -1.6873 0.0625 28 6 4.7193 -1.3242 -1.0084 29 6 4.8250 -2.4099 -1.7983 30 7 4.1292 -3.4058 -1.2299 31 6 3.6012 -2.9803 -0.1150 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5138 -0.8899 34 1 -0.3634 -1.0277 0.0005 35 1 1.8933 -0.5139 -0.8900 36 1 1.6767 1.9563 0.8900 37 1 3.1300 1.4425 -0.0005 38 1 1.6767 1.9562 -0.8900 39 1 1.6054 -1.7199 1.2952 40 1 1.7517 -0.1584 2.1370 41 1 6.2073 -0.3640 1.1484 42 1 6.5664 -2.1050 0.9458 43 1 7.7818 -0.1373 2.9631 44 1 8.6279 -1.3085 1.8970 45 1 9.0767 -1.1733 4.6983 46 1 8.4540 -2.6440 5.4988 47 1 4.4461 0.9480 7.1856 48 1 5.2086 -1.6568 5.7744 49 1 5.4363 -0.2931 4.6491 50 1 5.1603 -0.3543 -1.1848 51 1 5.3700 -2.4671 -2.7289 52 1 2.9886 -3.5654 0.5550 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001188286577.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:55:19 Heat of formation + Delta-G solvation = 60.918684 kcal Electronic energy + Delta-G solvation = -32772.282542 eV Core-core repulsion = 28773.796057 eV Total energy + Delta-G solvation = -3998.486486 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -42.33410 -40.10335 -38.38421 -36.73916 -35.02317 -33.72779 -32.22440 -30.72923 -29.92972 -29.13228 -28.61739 -27.40101 -26.92897 -24.97595 -24.33548 -22.68958 -21.58635 -21.40921 -20.58675 -19.99794 -19.61567 -18.87099 -17.70673 -16.94216 -16.46862 -16.05221 -15.65122 -15.40332 -14.63644 -14.62190 -14.41665 -14.16326 -14.00967 -13.93564 -13.71759 -13.51505 -13.44975 -12.90279 -12.75748 -12.68109 -12.44369 -12.33926 -12.22849 -11.93294 -11.78489 -11.55621 -11.24727 -11.14229 -11.03251 -10.95995 -10.83889 -10.79146 -10.58180 -10.28236 -10.21031 -10.08980 -10.00876 -9.93268 -9.74096 -9.32916 -8.62370 -8.56883 -8.32945 -6.85227 -5.71114 -3.07709 1.97364 2.23241 2.99903 3.13507 3.16271 3.38360 3.42866 3.44607 4.22090 4.38571 4.47434 4.60038 4.67173 4.69489 4.74525 4.77174 4.83572 4.93982 5.03114 5.18315 5.34213 5.40940 5.42478 5.44130 5.50013 5.50346 5.54059 5.60069 5.63633 5.65282 5.73179 5.74178 5.76203 5.85645 5.95312 6.00463 6.05350 6.10343 6.16748 6.21104 6.29890 6.42452 6.53340 6.57058 6.65978 6.79459 7.06297 7.48892 7.57652 7.78972 7.84834 8.02560 8.24885 8.29500 9.20204 9.80956 10.43573 11.38381 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012451 B = 0.003710 C = 0.003112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2248.322570 B = 7544.500022 C = 8995.301893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.096 4.096 3 C -0.151 4.151 4 C -0.109 4.109 5 C 0.121 3.879 6 H 0.121 0.879 7 C 0.517 3.483 8 O -0.512 6.512 9 N -0.596 5.596 10 C 0.107 3.893 11 C -0.120 4.120 12 C -0.111 4.111 13 H 0.087 0.913 14 C 0.145 3.855 15 N -0.602 5.602 16 C -0.235 4.235 17 H 0.078 0.922 18 C -0.005 4.005 19 N -0.916 5.916 20 Si 0.911 3.089 21 H -0.285 1.285 22 H -0.290 1.290 23 H -0.284 1.284 24 C 0.182 3.818 25 C 0.115 3.885 26 H 0.084 0.916 27 N -0.442 5.442 28 C -0.055 4.055 29 C -0.030 4.030 30 N -0.494 5.494 31 C 0.193 3.807 32 H 0.057 0.943 33 H 0.054 0.946 34 H 0.055 0.945 35 H 0.071 0.929 36 H 0.060 0.940 37 H 0.051 0.949 38 H 0.056 0.944 39 H 0.079 0.921 40 H 0.096 0.904 41 H 0.064 0.936 42 H 0.065 0.935 43 H 0.086 0.914 44 H 0.077 0.923 45 H 0.039 0.961 46 H 0.017 0.983 47 H 0.253 0.747 48 H 0.045 0.955 49 H 0.055 0.945 50 H 0.171 0.829 51 H 0.167 0.833 52 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.583 -1.345 -18.046 18.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.115 4.115 3 C -0.208 4.208 4 C -0.147 4.147 5 C 0.015 3.985 6 H 0.139 0.861 7 C 0.302 3.698 8 O -0.386 6.386 9 N -0.330 5.330 10 C -0.017 4.017 11 C -0.158 4.158 12 C -0.131 4.131 13 H 0.106 0.894 14 C 0.018 3.982 15 N -0.329 5.329 16 C -0.363 4.363 17 H 0.096 0.904 18 C -0.201 4.201 19 N -0.562 5.562 20 Si 0.741 3.259 21 H -0.212 1.212 22 H -0.216 1.216 23 H -0.211 1.211 24 C 0.056 3.944 25 C 0.013 3.987 26 H 0.102 0.898 27 N -0.126 5.126 28 C -0.187 4.187 29 C -0.178 4.178 30 N -0.212 5.212 31 C -0.090 4.090 32 H 0.077 0.923 33 H 0.073 0.927 34 H 0.074 0.926 35 H 0.089 0.911 36 H 0.079 0.921 37 H 0.070 0.930 38 H 0.075 0.925 39 H 0.097 0.903 40 H 0.114 0.886 41 H 0.083 0.917 42 H 0.084 0.916 43 H 0.105 0.895 44 H 0.096 0.904 45 H 0.057 0.943 46 H 0.035 0.965 47 H 0.064 0.936 48 H 0.063 0.937 49 H 0.073 0.927 50 H 0.188 0.812 51 H 0.184 0.816 52 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -3.351 -2.042 -17.617 18.048 hybrid contribution 0.340 1.538 1.069 1.904 sum -3.010 -0.504 -16.547 16.826 Atomic orbital electron populations 1.21792 0.94589 1.01920 1.01900 1.21118 0.96335 0.96269 0.97766 1.21923 1.00735 0.95925 1.02241 1.21846 0.90265 1.02958 0.99672 1.21758 0.98411 0.95230 0.83139 0.86127 1.19930 0.81574 0.80063 0.88260 1.90792 1.54799 1.49859 1.43185 1.48896 1.04784 1.60840 1.18503 1.22314 0.88091 0.99661 0.91591 1.22747 0.95860 1.00606 0.96550 1.22939 0.94851 0.98284 0.97032 0.89443 1.21075 0.93032 0.94263 0.89814 1.44128 1.01937 1.48662 1.38171 1.18965 0.93760 1.16052 1.07548 0.90402 1.24832 0.95418 1.00189 0.99708 1.69984 0.98593 1.44479 1.43162 0.86222 0.76793 0.80738 0.82114 1.21187 1.21593 1.21104 1.21234 0.87432 0.95206 0.90494 1.23163 0.91117 0.97891 0.86575 0.89807 1.45472 1.38437 1.11311 1.17403 1.22698 1.03239 1.01969 0.90817 1.22234 1.04303 0.89555 1.01686 1.70330 1.12970 1.30610 1.07310 1.24882 1.03340 0.83169 0.97564 0.92340 0.92652 0.92591 0.91082 0.92105 0.92957 0.92494 0.90269 0.88599 0.91715 0.91640 0.89539 0.90412 0.94272 0.96486 0.93624 0.93702 0.92667 0.81163 0.81595 0.78576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.24 9.19 37.16 0.34 -0.90 16 2 C -0.10 -0.89 2.86 -90.62 -0.26 -1.15 16 3 C -0.15 -1.30 8.95 37.16 0.33 -0.96 16 4 C -0.11 -1.23 3.49 -26.74 -0.09 -1.32 16 5 C 0.12 1.45 1.87 -69.08 -0.13 1.32 16 6 H 0.12 1.32 5.99 -51.93 -0.31 1.01 16 7 C 0.52 8.58 6.82 -10.98 -0.07 8.50 16 8 O -0.51 -10.51 15.99 5.56 0.09 -10.42 16 9 N -0.60 -9.83 2.85 -160.83 -0.46 -10.29 16 10 C 0.11 1.40 5.34 -2.55 -0.01 1.38 16 11 C -0.12 -1.68 6.35 -24.76 -0.16 -1.84 16 12 C -0.11 -1.81 3.92 -88.26 -0.35 -2.15 16 13 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 14 C 0.14 2.86 6.51 -3.69 -0.02 2.83 16 15 N -0.60 -15.08 3.37 -172.27 -0.58 -15.66 16 16 C -0.24 -6.47 10.25 -15.06 -0.15 -6.63 16 17 H 0.08 2.05 7.83 -52.49 -0.41 1.64 16 18 C 0.00 -0.13 5.48 -17.43 -0.10 -0.22 16 19 N -0.92 -27.20 10.23 55.49 0.57 -26.63 16 20 Si 0.91 22.03 29.55 -169.99 -5.02 17.01 16 21 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 22 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 23 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 24 C 0.18 4.47 4.63 -3.59 -0.02 4.45 16 25 C 0.12 2.19 3.91 -65.16 -0.26 1.94 16 26 H 0.08 1.62 8.14 -51.93 -0.42 1.20 16 27 N -0.44 -4.84 1.34 -112.69 -0.15 -4.99 16 28 C -0.05 -0.53 10.13 -16.56 -0.17 -0.69 16 29 C -0.03 -0.32 11.87 -17.81 -0.21 -0.54 16 30 N -0.49 -6.58 11.25 -14.67 -0.16 -6.74 16 31 C 0.19 2.39 11.59 -90.38 -1.05 1.34 16 32 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 34 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 35 H 0.07 0.70 7.62 -51.93 -0.40 0.31 16 36 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.05 0.43 6.46 -51.93 -0.34 0.10 16 38 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 39 H 0.08 0.92 7.80 -51.92 -0.41 0.52 16 40 H 0.10 1.22 7.95 -51.93 -0.41 0.81 16 41 H 0.06 0.75 7.17 -51.93 -0.37 0.37 16 42 H 0.07 0.82 7.85 -51.93 -0.41 0.41 16 43 H 0.09 1.45 7.93 -51.93 -0.41 1.03 16 44 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 45 H 0.04 0.74 7.94 -51.93 -0.41 0.33 16 46 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 47 H 0.25 7.40 8.31 -40.82 -0.34 7.06 16 48 H 0.04 1.29 7.51 -51.93 -0.39 0.90 16 49 H 0.06 1.53 6.86 -51.93 -0.36 1.17 16 50 H 0.17 1.19 8.06 -52.49 -0.42 0.77 16 51 H 0.17 1.42 8.06 -52.49 -0.42 1.00 16 52 H 0.20 2.27 8.06 -52.48 -0.42 1.84 16 LS Contribution 403.76 15.07 6.08 6.08 Total: -1.00 -32.97 403.76 -10.84 -43.81 By element: Atomic # 1 Polarization: 11.28 SS G_CDS: -8.83 Total: 2.45 kcal Atomic # 6 Polarization: 7.74 SS G_CDS: -2.37 Total: 5.37 kcal Atomic # 7 Polarization: -63.52 SS G_CDS: -0.79 Total: -64.31 kcal Atomic # 8 Polarization: -10.51 SS G_CDS: 0.09 Total: -10.42 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -32.97 -10.84 -43.81 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188286577.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.733 kcal (2) G-P(sol) polarization free energy of solvation -32.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.814 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds