Wall clock time and date at job start Wed Apr 1 2020 03:55:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.47082 * 2 1 4 4 C 1.52998 * 109.47217 * 119.99989 * 2 1 3 5 5 C 1.52993 * 109.47083 * 174.99608 * 4 2 1 6 6 H 1.09001 * 109.46944 * 55.00320 * 5 4 2 7 7 C 1.50704 * 109.47130 * 175.00098 * 5 4 2 8 8 O 1.21279 * 120.00190 * 359.97438 * 7 5 4 9 9 N 1.34778 * 120.00098 * 180.02562 * 7 5 4 10 10 C 1.47352 * 125.52175 * 359.97438 * 9 7 5 11 11 C 1.54945 * 104.90129 * 156.77424 * 10 9 7 12 12 C 1.54790 * 101.45647 * 37.25277 * 11 10 9 13 13 H 1.08997 * 112.84920 * 86.23331 * 12 11 10 14 14 C 1.53513 * 109.68408 * 212.92440 * 12 11 10 15 15 N 1.46654 * 107.05261 * 84.82746 * 14 12 11 16 16 C 1.36932 * 125.29109 * 197.35701 * 15 14 12 17 17 H 1.08002 * 119.99921 * 0.02562 * 16 15 14 18 18 C 1.38811 * 119.99980 * 180.02562 * 16 15 14 19 19 N 1.31621 * 120.00173 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 120.00137 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.46996 * 59.99534 * 20 18 16 22 22 H 1.48497 * 109.47374 * 180.02562 * 20 18 16 23 23 H 1.48499 * 109.47074 * 300.00233 * 20 18 16 24 24 C 1.46495 * 109.42081 * 17.38307 * 15 14 12 25 25 C 1.48615 * 125.40146 * 180.71044 * 9 7 5 26 26 H 1.08991 * 113.54382 * 56.37268 * 25 9 7 27 27 N 1.46501 * 109.47371 * 294.99972 * 5 4 2 28 28 C 1.36886 * 126.39417 * 119.71439 * 27 5 4 29 29 C 1.34677 * 106.81503 * 179.84387 * 28 27 5 30 30 N 1.34128 * 108.01564 * 0.42137 * 29 28 27 31 31 C 1.30490 * 109.26161 * 359.73058 * 30 29 28 32 32 H 1.09002 * 109.46773 * 299.99726 * 1 2 3 33 33 H 1.08994 * 109.47086 * 60.00059 * 1 2 3 34 34 H 1.09005 * 109.47480 * 180.02562 * 1 2 3 35 35 H 1.08997 * 109.46547 * 239.99884 * 2 1 3 36 36 H 1.08996 * 109.46859 * 60.00135 * 3 2 1 37 37 H 1.09000 * 109.46876 * 180.02562 * 3 2 1 38 38 H 1.08999 * 109.46661 * 299.99862 * 3 2 1 39 39 H 1.09010 * 109.47113 * 54.99721 * 4 2 1 40 40 H 1.09000 * 109.47301 * 295.00463 * 4 2 1 41 41 H 1.08992 * 110.35713 * 37.91394 * 10 9 7 42 42 H 1.09005 * 110.44088 * 275.67505 * 10 9 7 43 43 H 1.09003 * 111.03075 * 279.20527 * 11 10 9 44 44 H 1.09005 * 111.06417 * 155.30749 * 11 10 9 45 45 H 1.08997 * 109.92402 * 325.47850 * 14 12 11 46 46 H 1.09000 * 109.91813 * 204.17793 * 14 12 11 47 47 H 0.96992 * 120.00074 * 179.97438 * 19 18 16 48 48 H 1.09002 * 109.71712 * 117.76499 * 24 15 14 49 49 H 1.09001 * 109.71175 * 238.36286 * 24 15 14 50 50 H 1.07999 * 126.59132 * 359.97438 * 28 27 5 51 51 H 1.07993 * 125.99118 * 180.11735 * 29 28 27 52 52 H 1.08006 * 125.65442 * 180.02562 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 3.5648 -0.8311 1.1879 6 1 3.9954 0.1611 1.0526 7 6 4.0774 -1.4303 2.4721 8 8 3.2997 -1.7387 3.3502 9 7 5.4001 -1.6226 2.6453 10 6 6.4488 -1.2934 1.6640 11 6 7.7406 -1.1245 2.5028 12 6 7.5594 -2.2289 3.5721 13 1 7.9241 -3.2016 3.2420 14 6 8.1897 -1.7750 4.8962 15 7 7.1850 -0.9683 5.5966 16 6 7.4416 -0.1087 6.6311 17 1 8.4519 0.0158 6.9918 18 6 6.4031 0.6026 7.2163 19 7 5.1718 0.4512 6.7765 20 14 6.7532 1.7758 8.6272 21 1 7.6977 2.8279 8.1733 22 1 5.4849 2.4070 9.0725 23 1 7.3553 1.0246 9.7578 24 6 5.8640 -1.2255 5.0177 25 6 6.0331 -2.2156 3.8521 26 1 5.6539 -3.2069 4.1001 27 7 3.9479 -1.6873 0.0625 28 6 4.7193 -1.3242 -1.0084 29 6 4.8250 -2.4099 -1.7983 30 7 4.1292 -3.4058 -1.2299 31 6 3.6012 -2.9803 -0.1150 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5138 -0.8899 34 1 -0.3634 -1.0277 0.0005 35 1 1.8933 -0.5139 -0.8900 36 1 1.6767 1.9563 0.8900 37 1 3.1300 1.4425 -0.0005 38 1 1.6767 1.9562 -0.8900 39 1 1.6054 -1.7199 1.2952 40 1 1.7517 -0.1584 2.1370 41 1 6.2073 -0.3640 1.1484 42 1 6.5664 -2.1050 0.9458 43 1 7.7818 -0.1373 2.9631 44 1 8.6279 -1.3085 1.8970 45 1 9.0767 -1.1733 4.6983 46 1 8.4540 -2.6440 5.4988 47 1 4.4461 0.9480 7.1856 48 1 5.2086 -1.6568 5.7744 49 1 5.4363 -0.2931 4.6491 50 1 5.1603 -0.3543 -1.1848 51 1 5.3700 -2.4671 -2.7289 52 1 2.9886 -3.5654 0.5550 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001188286577.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:55:17 Heat of formation + Delta-G solvation = 42.983135 kcal Electronic energy + Delta-G solvation = -32773.060286 eV Core-core repulsion = 28773.796057 eV Total energy + Delta-G solvation = -3999.264229 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -43.24243 -41.45270 -39.74050 -37.73191 -36.68136 -34.76132 -33.94507 -32.26861 -30.87620 -30.52975 -29.75628 -28.47108 -28.08924 -26.62479 -25.70063 -23.88483 -22.67207 -22.33273 -22.06889 -21.13097 -20.71468 -20.20618 -19.00370 -18.68420 -17.66658 -17.27055 -17.02957 -16.56589 -16.31499 -15.71482 -15.58084 -15.27898 -15.09282 -15.08122 -14.84583 -14.75666 -14.41331 -14.32283 -14.05171 -13.80331 -13.70053 -13.40218 -13.26880 -13.21585 -13.09105 -12.95393 -12.72909 -12.69284 -12.65295 -12.22611 -11.96546 -11.88827 -11.83970 -11.74428 -11.62469 -11.57939 -11.50175 -11.35995 -10.90280 -10.73945 -10.44010 -9.76106 -9.37104 -8.92404 -7.85771 -5.24762 1.06548 1.15081 1.42375 1.46144 1.52646 1.75813 2.03591 2.29111 2.46950 3.10836 3.30962 3.42316 3.51372 3.58282 3.70140 3.72447 3.84389 3.89398 3.95716 3.98433 4.07469 4.23142 4.26160 4.30098 4.42469 4.47208 4.61393 4.62894 4.65638 4.67970 4.78199 4.79493 4.81297 4.88964 4.92365 4.96929 5.00038 5.01817 5.10334 5.13077 5.21408 5.34279 5.37561 5.41715 5.42419 5.45222 5.53552 5.75346 5.89853 6.15473 6.16734 6.43887 6.96226 7.06801 7.17597 7.76244 8.37088 9.22025 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012451 B = 0.003710 C = 0.003112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2248.322570 B = 7544.500022 C = 8995.301893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.085 4.085 3 C -0.151 4.151 4 C -0.105 4.105 5 C 0.141 3.859 6 H 0.141 0.859 7 C 0.508 3.492 8 O -0.565 6.565 9 N -0.599 5.599 10 C 0.109 3.891 11 C -0.111 4.111 12 C -0.095 4.095 13 H 0.126 0.874 14 C 0.137 3.863 15 N -0.622 5.622 16 C -0.244 4.244 17 H 0.089 0.911 18 C -0.066 4.066 19 N -0.950 5.950 20 Si 0.978 3.022 21 H -0.271 1.271 22 H -0.299 1.299 23 H -0.277 1.277 24 C 0.205 3.795 25 C 0.117 3.883 26 H 0.075 0.925 27 N -0.438 5.438 28 C -0.039 4.039 29 C -0.042 4.042 30 N -0.519 5.519 31 C 0.175 3.825 32 H 0.053 0.947 33 H 0.069 0.931 34 H 0.052 0.948 35 H 0.072 0.928 36 H 0.051 0.949 37 H 0.059 0.941 38 H 0.071 0.929 39 H 0.068 0.932 40 H 0.075 0.925 41 H 0.088 0.912 42 H 0.085 0.915 43 H 0.057 0.943 44 H 0.121 0.879 45 H 0.055 0.945 46 H 0.020 0.980 47 H 0.243 0.757 48 H -0.017 1.017 49 H 0.016 0.984 50 H 0.206 0.794 51 H 0.189 0.811 52 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.149 -0.566 -21.064 21.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.103 4.103 3 C -0.208 4.208 4 C -0.144 4.144 5 C 0.034 3.966 6 H 0.158 0.842 7 C 0.295 3.705 8 O -0.442 6.442 9 N -0.331 5.331 10 C -0.013 4.013 11 C -0.149 4.149 12 C -0.114 4.114 13 H 0.144 0.856 14 C 0.012 3.988 15 N -0.349 5.349 16 C -0.373 4.373 17 H 0.106 0.894 18 C -0.259 4.259 19 N -0.599 5.599 20 Si 0.806 3.194 21 H -0.197 1.197 22 H -0.225 1.225 23 H -0.203 1.203 24 C 0.079 3.921 25 C 0.013 3.987 26 H 0.093 0.907 27 N -0.122 5.122 28 C -0.171 4.171 29 C -0.189 4.189 30 N -0.237 5.237 31 C -0.107 4.107 32 H 0.072 0.928 33 H 0.088 0.912 34 H 0.071 0.929 35 H 0.091 0.909 36 H 0.070 0.930 37 H 0.078 0.922 38 H 0.090 0.910 39 H 0.087 0.913 40 H 0.093 0.907 41 H 0.106 0.894 42 H 0.103 0.897 43 H 0.075 0.925 44 H 0.140 0.860 45 H 0.073 0.927 46 H 0.038 0.962 47 H 0.052 0.948 48 H 0.001 0.999 49 H 0.034 0.966 50 H 0.223 0.777 51 H 0.206 0.794 52 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -0.850 -1.279 -20.688 20.745 hybrid contribution -0.382 1.234 2.031 2.407 sum -1.231 -0.045 -18.657 18.698 Atomic orbital electron populations 1.21800 0.94197 1.01900 1.02350 1.21028 0.96630 0.96500 0.96187 1.21932 1.01179 0.95157 1.02542 1.21800 0.90033 1.02464 1.00103 1.21518 0.98514 0.95394 0.81158 0.84178 1.20826 0.81263 0.79136 0.89311 1.90767 1.56158 1.51927 1.45378 1.48999 1.05592 1.60354 1.18203 1.22537 0.86372 1.01475 0.90882 1.22743 0.98081 0.97992 0.96084 1.22972 0.91469 1.01014 0.95994 0.85626 1.21328 0.92546 0.93733 0.91185 1.44422 1.03368 1.48838 1.38248 1.19441 0.94139 1.15797 1.07952 0.89364 1.25715 0.95231 1.02372 1.02588 1.70274 0.99412 1.45611 1.44582 0.85156 0.76322 0.78797 0.79091 1.19660 1.22528 1.20270 1.20731 0.86392 0.94242 0.90718 1.22853 0.94058 0.95799 0.85948 0.90737 1.45387 1.38738 1.10759 1.17344 1.23232 1.01582 1.02983 0.89302 1.22677 1.04349 0.89264 1.02628 1.70323 1.13735 1.31953 1.07720 1.24846 1.04160 0.83852 0.97805 0.92825 0.91238 0.92916 0.90949 0.93005 0.92244 0.91028 0.91293 0.90686 0.89358 0.89675 0.92456 0.86033 0.92729 0.96174 0.94780 0.99884 0.96609 0.77717 0.79430 0.79166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.38 9.19 71.98 0.66 -1.72 16 2 C -0.08 -1.46 2.86 -10.79 -0.03 -1.49 16 3 C -0.15 -2.28 8.95 71.98 0.64 -1.64 16 4 C -0.11 -2.42 3.49 30.59 0.11 -2.32 16 5 C 0.14 3.26 1.87 44.24 0.08 3.34 16 6 H 0.14 2.73 5.99 -2.39 -0.01 2.72 16 7 C 0.51 17.30 6.82 87.66 0.60 17.90 16 8 O -0.56 -24.97 15.99 -3.03 -0.05 -25.02 16 9 N -0.60 -19.51 2.85 -781.14 -2.23 -21.74 16 10 C 0.11 2.48 5.34 86.88 0.46 2.94 16 11 C -0.11 -2.71 6.35 31.87 0.20 -2.51 16 12 C -0.10 -2.86 3.92 -9.26 -0.04 -2.89 16 13 H 0.13 2.93 8.14 -2.39 -0.02 2.91 16 14 C 0.14 5.25 6.51 86.52 0.56 5.81 16 15 N -0.62 -31.95 3.37 -698.93 -2.36 -34.30 16 16 C -0.24 -13.72 10.25 84.03 0.86 -12.86 16 17 H 0.09 4.64 7.83 -2.91 -0.02 4.62 16 18 C -0.07 -3.83 5.48 84.86 0.47 -3.37 16 19 N -0.95 -59.81 10.23 21.65 0.22 -59.58 16 20 Si 0.98 46.37 29.55 68.60 2.03 48.40 16 21 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 22 H -0.30 -14.46 7.11 99.48 0.71 -13.75 16 23 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 24 C 0.21 10.70 4.63 86.67 0.40 11.10 16 25 C 0.12 4.55 3.91 45.62 0.18 4.73 16 26 H 0.07 3.00 8.14 -2.39 -0.02 2.98 16 27 N -0.44 -8.66 1.34 -510.46 -0.68 -9.35 16 28 C -0.04 -0.59 10.13 83.09 0.84 0.25 16 29 C -0.04 -0.77 11.87 83.53 0.99 0.22 16 30 N -0.52 -12.85 11.25 -200.31 -2.25 -15.10 16 31 C 0.18 4.17 11.59 180.27 2.09 6.26 16 32 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.05 0.89 8.14 -2.38 -0.02 0.87 16 35 H 0.07 1.27 7.62 -2.39 -0.02 1.25 16 36 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 37 H 0.06 0.81 6.46 -2.39 -0.02 0.79 16 38 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 39 H 0.07 1.71 7.80 -2.38 -0.02 1.69 16 40 H 0.07 2.05 7.95 -2.39 -0.02 2.03 16 41 H 0.09 1.64 7.17 -2.39 -0.02 1.62 16 42 H 0.09 1.70 7.85 -2.38 -0.02 1.68 16 43 H 0.06 1.78 7.93 -2.39 -0.02 1.76 16 44 H 0.12 1.98 8.14 -2.38 -0.02 1.96 16 45 H 0.05 1.94 7.94 -2.39 -0.02 1.92 16 46 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 47 H 0.24 15.10 8.31 -92.71 -0.77 14.33 16 48 H -0.02 -1.08 7.51 -2.39 -0.02 -1.09 16 49 H 0.02 0.93 6.86 -2.39 -0.02 0.92 16 50 H 0.21 1.63 8.06 -2.91 -0.02 1.61 16 51 H 0.19 2.45 8.06 -2.91 -0.02 2.43 16 52 H 0.19 4.56 8.06 -2.91 -0.02 4.54 16 Total: -1.00 -78.84 403.76 4.65 -74.18 By element: Atomic # 1 Polarization: 17.87 SS G_CDS: 0.89 Total: 18.76 kcal Atomic # 6 Polarization: 14.66 SS G_CDS: 9.08 Total: 23.74 kcal Atomic # 7 Polarization: -132.77 SS G_CDS: -7.30 Total: -140.07 kcal Atomic # 8 Polarization: -24.97 SS G_CDS: -0.05 Total: -25.02 kcal Atomic # 14 Polarization: 46.37 SS G_CDS: 2.03 Total: 48.40 kcal Total: -78.84 4.65 -74.18 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188286577.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.168 kcal (2) G-P(sol) polarization free energy of solvation -78.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.185 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds