Wall clock time and date at job start Wed Apr 1 2020 05:39:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52994 * 109.47463 * 2 1 4 4 C 1.52995 * 109.47648 * 179.97438 * 3 2 1 5 5 N 1.46498 * 109.47529 * 179.97438 * 4 3 2 6 6 C 1.36843 * 120.00039 * 51.71158 * 5 4 3 7 7 H 1.08004 * 119.99342 * 36.13161 * 6 5 4 8 8 C 1.39058 * 120.00341 * 216.12597 * 6 5 4 9 9 N 1.31356 * 119.99710 * 20.97837 * 8 6 5 10 10 Si 1.86798 * 120.00289 * 200.97692 * 8 6 5 11 11 H 1.48498 * 109.47098 * 64.99832 * 10 8 6 12 12 H 1.48502 * 109.47180 * 185.00587 * 10 8 6 13 13 H 1.48507 * 109.46898 * 305.00372 * 10 8 6 14 14 C 1.34777 * 119.99909 * 231.43978 * 5 4 3 15 15 O 1.21606 * 119.99859 * 183.22528 * 14 5 4 16 16 C 1.47601 * 120.00194 * 3.22945 * 14 5 4 17 17 C 1.40055 * 120.98160 * 48.00490 * 16 14 5 18 18 C 1.37892 * 119.08015 * 179.75272 * 17 16 14 19 19 N 1.31964 * 121.13626 * 0.54496 * 18 17 16 20 20 C 1.31589 * 122.19612 * 359.72926 * 19 18 17 21 21 C 1.39151 * 120.77200 * 359.97438 * 20 19 18 22 22 N 1.38907 * 120.61128 * 180.02562 * 21 20 19 23 23 C 1.46965 * 110.99846 * 63.78237 * 22 21 20 24 24 C 1.53053 * 109.36331 * 176.80736 * 23 22 21 25 25 N 1.46956 * 109.36021 * 58.40157 * 24 23 22 26 26 C 1.46902 * 110.99686 * 176.81088 * 25 24 23 27 27 C 1.46954 * 110.88343 * 300.67292 * 25 24 23 28 28 C 1.46954 * 111.00454 * 299.98271 * 22 21 20 29 29 H 1.08995 * 109.46703 * 299.99934 * 1 2 3 30 30 H 1.09000 * 109.47130 * 60.00183 * 1 2 3 31 31 H 1.09008 * 109.46910 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47039 * 239.99892 * 2 1 3 33 33 H 1.09008 * 109.46846 * 119.99987 * 2 1 3 34 34 H 1.09002 * 109.47081 * 59.99918 * 3 2 1 35 35 H 1.09003 * 109.46843 * 300.00546 * 3 2 1 36 36 H 1.09002 * 109.46870 * 59.99882 * 4 3 2 37 37 H 1.08998 * 109.47346 * 300.00660 * 4 3 2 38 38 H 0.96999 * 119.99963 * 184.92717 * 9 8 6 39 39 H 1.07998 * 120.46030 * 0.02791 * 17 16 14 40 40 H 1.08004 * 119.42909 * 180.29422 * 18 17 16 41 41 H 1.08009 * 119.61288 * 180.02562 * 20 19 18 42 42 H 1.08998 * 109.48311 * 296.77625 * 23 22 21 43 43 H 1.09000 * 109.48761 * 56.84071 * 23 22 21 44 44 H 1.08998 * 109.48815 * 298.43598 * 24 23 22 45 45 H 1.08998 * 109.48480 * 178.36589 * 24 23 22 46 46 H 1.09000 * 109.47586 * 183.80134 * 26 25 24 47 47 H 1.09007 * 109.47216 * 303.79890 * 26 25 24 48 48 H 1.09003 * 109.47519 * 63.79756 * 26 25 24 49 49 H 1.08995 * 109.49254 * 299.36153 * 27 25 24 50 50 H 1.08996 * 109.50936 * 179.29860 * 27 25 24 51 51 H 1.08998 * 109.48675 * 303.15175 * 28 22 21 52 52 H 1.08990 * 109.49010 * 63.19385 * 28 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4425 0.0006 5 7 4.0584 2.8236 0.0000 6 6 3.5938 3.7141 0.9295 7 1 3.3796 3.3826 1.9348 8 6 3.3977 5.0455 0.5796 9 7 3.2521 5.3783 -0.6827 10 14 3.3411 6.3609 1.9047 11 1 4.6670 6.4536 2.5670 12 1 3.0025 7.6693 1.2893 13 1 2.3088 6.0054 2.9114 14 6 4.9694 3.2159 -0.9125 15 8 5.4185 4.3454 -0.8767 16 6 5.4220 2.2745 -1.9554 17 6 4.5013 1.5271 -2.7006 18 6 4.9671 0.6629 -3.6689 19 7 6.2599 0.5234 -3.8942 20 6 7.1660 1.1973 -3.2188 21 6 6.7906 2.0973 -2.2261 22 7 7.7499 2.8074 -1.5156 23 6 8.5030 3.7065 -2.4013 24 6 9.4925 4.5263 -1.5698 25 7 10.3980 3.6168 -0.8540 26 6 11.4125 4.3678 -0.1025 27 6 9.6451 2.7178 0.0317 28 6 8.6556 1.8980 -0.7997 29 1 -0.3632 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0278 0.0005 32 1 1.8934 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8901 34 1 1.6768 1.9563 0.8900 35 1 1.6767 1.9563 -0.8900 36 1 3.9337 0.9285 -0.8891 37 1 3.9331 0.9287 0.8908 38 1 3.1869 6.3130 -0.9335 39 1 3.4411 1.6295 -2.5224 40 1 4.2619 0.0873 -4.2502 41 1 8.2134 1.0509 -3.4381 42 1 9.0481 3.1176 -3.1389 43 1 7.8118 4.3782 -2.9104 44 1 8.9456 5.1356 -0.8503 45 1 10.0723 5.1730 -2.2283 46 1 12.1098 3.6711 0.3629 47 1 11.9551 5.0254 -0.7818 48 1 10.9257 4.9644 0.6690 49 1 9.0999 3.3066 0.7693 50 1 10.3359 2.0460 0.5411 51 1 8.0757 1.2513 -0.1413 52 1 9.2021 1.2883 -1.5191 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001198146181.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:39:07 Heat of formation + Delta-G solvation = 39.976707 kcal Electronic energy + Delta-G solvation = -32587.609350 eV Core-core repulsion = 28588.214752 eV Total energy + Delta-G solvation = -3999.394598 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -40.51312 -38.76335 -37.89622 -35.63933 -35.18218 -33.29763 -32.43026 -31.14017 -30.81094 -30.27220 -28.12797 -27.43016 -25.35786 -24.03941 -23.69457 -23.46563 -22.51726 -21.96099 -20.46057 -19.71900 -19.58704 -17.37428 -16.77843 -16.13894 -15.89038 -15.17366 -15.13503 -14.86313 -14.84563 -14.78144 -14.55578 -14.39890 -13.95413 -13.84814 -13.47562 -13.30646 -13.26248 -12.80974 -12.50205 -12.44185 -12.30833 -12.04211 -11.94014 -11.80122 -11.67918 -11.30489 -11.13779 -10.96179 -10.85245 -10.84647 -10.69837 -10.65476 -10.59615 -10.42856 -10.14650 -10.04946 -9.64770 -9.01044 -8.83899 -8.58269 -8.35401 -8.13129 -7.81515 -7.06620 -6.09983 -3.79067 1.35104 1.48317 3.32137 3.38615 3.42423 3.91467 3.95234 4.03015 4.31278 4.54896 4.72218 4.81597 4.96847 5.07881 5.19183 5.28321 5.28841 5.34475 5.36338 5.41647 5.43714 5.45270 5.52906 5.59049 5.60190 5.62631 5.65863 5.78712 5.81526 5.84930 5.91312 5.93588 6.02890 6.09883 6.13864 6.15300 6.17626 6.25453 6.26298 6.34875 6.45441 6.49149 6.56534 6.85103 6.90945 6.99594 7.04316 7.08605 7.25274 7.57814 7.65318 8.22517 8.23625 9.03143 9.21580 9.66229 10.34703 10.95485 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.008783 B = 0.004816 C = 0.003538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3187.134694 B = 5812.729440 C = 7912.850214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.123 4.123 3 C -0.119 4.119 4 C 0.094 3.906 5 N -0.445 5.445 6 C -0.331 4.331 7 H 0.079 0.921 8 C 0.069 3.931 9 N -0.816 5.816 10 Si 0.904 3.096 11 H -0.277 1.277 12 H -0.288 1.288 13 H -0.278 1.278 14 C 0.507 3.493 15 O -0.501 6.501 16 C -0.021 4.021 17 C -0.149 4.149 18 C 0.082 3.918 19 N -0.485 5.485 20 C 0.065 3.935 21 C 0.065 3.935 22 N -0.481 5.481 23 C 0.073 3.927 24 C 0.058 3.942 25 N -0.546 5.546 26 C 0.026 3.974 27 C 0.058 3.942 28 C 0.065 3.935 29 H 0.053 0.947 30 H 0.052 0.948 31 H 0.046 0.954 32 H 0.055 0.945 33 H 0.056 0.944 34 H 0.073 0.927 35 H 0.062 0.938 36 H 0.068 0.932 37 H 0.041 0.959 38 H 0.264 0.736 39 H 0.141 0.859 40 H 0.153 0.847 41 H 0.147 0.853 42 H 0.039 0.961 43 H 0.084 0.916 44 H 0.051 0.949 45 H 0.077 0.923 46 H 0.065 0.935 47 H 0.066 0.934 48 H 0.027 0.973 49 H 0.048 0.952 50 H 0.077 0.923 51 H 0.078 0.922 52 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.636 -8.587 -1.837 11.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.162 4.162 3 C -0.158 4.158 4 C -0.030 4.030 5 N -0.167 5.167 6 C -0.458 4.458 7 H 0.097 0.903 8 C -0.142 4.142 9 N -0.450 5.450 10 Si 0.731 3.269 11 H -0.203 1.203 12 H -0.213 1.213 13 H -0.204 1.204 14 C 0.293 3.707 15 O -0.377 6.377 16 C -0.033 4.033 17 C -0.170 4.170 18 C -0.073 4.073 19 N -0.195 5.195 20 C -0.095 4.095 21 C -0.032 4.032 22 N -0.203 5.203 23 C -0.054 4.054 24 C -0.070 4.070 25 N -0.271 5.271 26 C -0.122 4.122 27 C -0.070 4.070 28 C -0.062 4.062 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.065 0.935 32 H 0.074 0.926 33 H 0.075 0.925 34 H 0.092 0.908 35 H 0.081 0.919 36 H 0.086 0.914 37 H 0.060 0.940 38 H 0.075 0.925 39 H 0.159 0.841 40 H 0.170 0.830 41 H 0.164 0.836 42 H 0.057 0.943 43 H 0.102 0.898 44 H 0.069 0.931 45 H 0.096 0.904 46 H 0.084 0.916 47 H 0.084 0.916 48 H 0.045 0.955 49 H 0.066 0.934 50 H 0.096 0.904 51 H 0.097 0.903 52 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 7.052 -8.386 -2.560 11.252 hybrid contribution -0.423 1.277 1.219 1.816 sum 6.629 -7.109 -1.340 9.812 Atomic orbital electron populations 1.21746 0.96330 1.00670 1.01901 1.21524 0.95518 0.97859 1.01250 1.21762 0.95695 0.94766 1.03537 1.21777 0.94268 0.86602 1.00327 1.43185 1.35143 1.08032 1.30329 1.18855 1.45450 0.90080 0.91407 0.90339 1.25016 0.95002 0.98526 0.95704 1.69878 1.40045 1.18163 1.16893 0.86401 0.78352 0.80693 0.81427 1.20305 1.21346 1.20379 1.17240 0.81992 0.87245 0.84180 1.90623 1.55440 1.19109 1.72510 1.21133 0.91999 0.94109 0.96092 1.22443 1.01194 0.96779 0.96575 1.22546 0.92026 0.96929 0.95815 1.67369 1.02398 1.23581 1.26149 1.23185 0.99121 0.94029 0.93169 1.19589 0.92125 0.96096 0.95410 1.59140 1.13644 1.19137 1.28360 1.22118 0.94548 0.95293 0.93397 1.22159 0.93165 0.94186 0.97533 1.62226 1.15379 1.20680 1.28820 1.22321 0.95136 0.97630 0.97161 1.22144 0.94840 0.95711 0.94352 1.22193 0.93021 0.93891 0.97126 0.92826 0.92860 0.93477 0.92609 0.92515 0.90837 0.91935 0.91423 0.94041 0.92536 0.84143 0.82994 0.83576 0.94266 0.89793 0.93057 0.90448 0.91578 0.91553 0.95476 0.93350 0.90423 0.90332 0.93959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.82 9.91 37.16 0.37 -1.45 16 2 C -0.12 -1.66 5.93 -26.73 -0.16 -1.82 16 3 C -0.12 -2.08 5.04 -26.74 -0.13 -2.22 16 4 C 0.09 1.81 5.17 -4.05 -0.02 1.79 16 5 N -0.44 -10.80 2.78 -115.98 -0.32 -11.12 16 6 C -0.33 -8.78 8.18 -15.01 -0.12 -8.90 16 7 H 0.08 2.02 7.92 -52.48 -0.42 1.60 16 8 C 0.07 1.88 4.30 -17.45 -0.08 1.81 16 9 N -0.82 -23.56 11.28 55.50 0.63 -22.94 16 10 Si 0.90 21.66 29.61 -169.99 -5.03 16.63 16 11 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 12 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 13 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 14 C 0.51 12.71 6.24 -12.44 -0.08 12.63 16 15 O -0.50 -14.48 13.78 5.27 0.07 -14.41 16 16 C -0.02 -0.43 5.07 -104.49 -0.53 -0.96 16 17 C -0.15 -2.63 7.44 -39.03 -0.29 -2.92 16 18 C 0.08 1.26 11.15 -17.62 -0.20 1.07 16 19 N -0.49 -7.96 10.32 -13.13 -0.14 -8.10 16 20 C 0.07 1.07 9.83 -17.32 -0.17 0.90 16 21 C 0.07 1.21 4.71 -83.41 -0.39 0.81 16 22 N -0.48 -8.64 3.74 -170.57 -0.64 -9.28 16 23 C 0.07 1.18 5.36 -3.76 -0.02 1.16 16 24 C 0.06 0.85 5.62 -3.77 -0.02 0.83 16 25 N -0.55 -7.36 4.97 -242.75 -1.21 -8.57 16 26 C 0.03 0.29 9.60 60.07 0.58 0.86 16 27 C 0.06 0.80 5.62 -3.77 -0.02 0.78 16 28 C 0.06 0.97 5.31 -3.77 -0.02 0.95 16 29 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.05 0.49 8.14 -51.92 -0.42 0.07 16 32 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.06 0.73 8.14 -51.92 -0.42 0.31 16 34 H 0.07 1.41 7.50 -51.93 -0.39 1.02 16 35 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 36 H 0.07 1.20 4.07 -51.93 -0.21 0.99 16 37 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 39 H 0.14 2.44 7.12 -52.49 -0.37 2.06 16 40 H 0.15 1.82 8.06 -52.48 -0.42 1.40 16 41 H 0.15 2.08 7.08 -52.48 -0.37 1.71 16 42 H 0.04 0.58 7.46 -51.93 -0.39 0.19 16 43 H 0.08 1.52 8.13 -51.93 -0.42 1.09 16 44 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 45 H 0.08 0.98 8.13 -51.93 -0.42 0.56 16 46 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 47 H 0.07 0.65 8.13 -51.92 -0.42 0.23 16 48 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 49 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 50 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 51 H 0.08 1.20 8.13 -51.93 -0.42 0.77 16 52 H 0.04 0.58 7.26 -51.93 -0.38 0.20 16 LS Contribution 407.31 15.07 6.14 6.14 Total: -1.00 -31.94 407.31 -10.65 -42.59 By element: Atomic # 1 Polarization: 12.59 SS G_CDS: -8.85 Total: 3.74 kcal Atomic # 6 Polarization: 6.62 SS G_CDS: -1.31 Total: 5.32 kcal Atomic # 7 Polarization: -58.33 SS G_CDS: -1.68 Total: -60.00 kcal Atomic # 8 Polarization: -14.48 SS G_CDS: 0.07 Total: -14.41 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.03 Total: 16.63 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -31.94 -10.65 -42.59 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001198146181.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.564 kcal (2) G-P(sol) polarization free energy of solvation -31.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.587 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds