Wall clock time and date at job start Wed Apr 1 2020 05:39:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52994 * 109.47463 * 2 1 4 4 C 1.52995 * 109.47648 * 179.97438 * 3 2 1 5 5 N 1.46498 * 109.47529 * 179.97438 * 4 3 2 6 6 C 1.36843 * 120.00039 * 51.71158 * 5 4 3 7 7 H 1.08004 * 119.99342 * 36.13161 * 6 5 4 8 8 C 1.39058 * 120.00341 * 216.12597 * 6 5 4 9 9 N 1.31356 * 119.99710 * 20.97837 * 8 6 5 10 10 Si 1.86798 * 120.00289 * 200.97692 * 8 6 5 11 11 H 1.48498 * 109.47098 * 64.99832 * 10 8 6 12 12 H 1.48502 * 109.47180 * 185.00587 * 10 8 6 13 13 H 1.48507 * 109.46898 * 305.00372 * 10 8 6 14 14 C 1.34777 * 119.99909 * 231.43978 * 5 4 3 15 15 O 1.21606 * 119.99859 * 183.22528 * 14 5 4 16 16 C 1.47601 * 120.00194 * 3.22945 * 14 5 4 17 17 C 1.40055 * 120.98160 * 48.00490 * 16 14 5 18 18 C 1.37892 * 119.08015 * 179.75272 * 17 16 14 19 19 N 1.31964 * 121.13626 * 0.54496 * 18 17 16 20 20 C 1.31589 * 122.19612 * 359.72926 * 19 18 17 21 21 C 1.39151 * 120.77200 * 359.97438 * 20 19 18 22 22 N 1.38907 * 120.61128 * 180.02562 * 21 20 19 23 23 C 1.46965 * 110.99846 * 63.78237 * 22 21 20 24 24 C 1.53053 * 109.36331 * 176.80736 * 23 22 21 25 25 N 1.46956 * 109.36021 * 58.40157 * 24 23 22 26 26 C 1.46902 * 110.99686 * 176.81088 * 25 24 23 27 27 C 1.46954 * 110.88343 * 300.67292 * 25 24 23 28 28 C 1.46954 * 111.00454 * 299.98271 * 22 21 20 29 29 H 1.08995 * 109.46703 * 299.99934 * 1 2 3 30 30 H 1.09000 * 109.47130 * 60.00183 * 1 2 3 31 31 H 1.09008 * 109.46910 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47039 * 239.99892 * 2 1 3 33 33 H 1.09008 * 109.46846 * 119.99987 * 2 1 3 34 34 H 1.09002 * 109.47081 * 59.99918 * 3 2 1 35 35 H 1.09003 * 109.46843 * 300.00546 * 3 2 1 36 36 H 1.09002 * 109.46870 * 59.99882 * 4 3 2 37 37 H 1.08998 * 109.47346 * 300.00660 * 4 3 2 38 38 H 0.96999 * 119.99963 * 184.92717 * 9 8 6 39 39 H 1.07998 * 120.46030 * 0.02791 * 17 16 14 40 40 H 1.08004 * 119.42909 * 180.29422 * 18 17 16 41 41 H 1.08009 * 119.61288 * 180.02562 * 20 19 18 42 42 H 1.08998 * 109.48311 * 296.77625 * 23 22 21 43 43 H 1.09000 * 109.48761 * 56.84071 * 23 22 21 44 44 H 1.08998 * 109.48815 * 298.43598 * 24 23 22 45 45 H 1.08998 * 109.48480 * 178.36589 * 24 23 22 46 46 H 1.09000 * 109.47586 * 183.80134 * 26 25 24 47 47 H 1.09007 * 109.47216 * 303.79890 * 26 25 24 48 48 H 1.09003 * 109.47519 * 63.79756 * 26 25 24 49 49 H 1.08995 * 109.49254 * 299.36153 * 27 25 24 50 50 H 1.08996 * 109.50936 * 179.29860 * 27 25 24 51 51 H 1.08998 * 109.48675 * 303.15175 * 28 22 21 52 52 H 1.08990 * 109.49010 * 63.19385 * 28 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4425 0.0006 5 7 4.0584 2.8236 0.0000 6 6 3.5938 3.7141 0.9295 7 1 3.3796 3.3826 1.9348 8 6 3.3977 5.0455 0.5796 9 7 3.2521 5.3783 -0.6827 10 14 3.3411 6.3609 1.9047 11 1 4.6670 6.4536 2.5670 12 1 3.0025 7.6693 1.2893 13 1 2.3088 6.0054 2.9114 14 6 4.9694 3.2159 -0.9125 15 8 5.4185 4.3454 -0.8767 16 6 5.4220 2.2745 -1.9554 17 6 4.5013 1.5271 -2.7006 18 6 4.9671 0.6629 -3.6689 19 7 6.2599 0.5234 -3.8942 20 6 7.1660 1.1973 -3.2188 21 6 6.7906 2.0973 -2.2261 22 7 7.7499 2.8074 -1.5156 23 6 8.5030 3.7065 -2.4013 24 6 9.4925 4.5263 -1.5698 25 7 10.3980 3.6168 -0.8540 26 6 11.4125 4.3678 -0.1025 27 6 9.6451 2.7178 0.0317 28 6 8.6556 1.8980 -0.7997 29 1 -0.3632 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0278 0.0005 32 1 1.8934 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8901 34 1 1.6768 1.9563 0.8900 35 1 1.6767 1.9563 -0.8900 36 1 3.9337 0.9285 -0.8891 37 1 3.9331 0.9287 0.8908 38 1 3.1869 6.3130 -0.9335 39 1 3.4411 1.6295 -2.5224 40 1 4.2619 0.0873 -4.2502 41 1 8.2134 1.0509 -3.4381 42 1 9.0481 3.1176 -3.1389 43 1 7.8118 4.3782 -2.9104 44 1 8.9456 5.1356 -0.8503 45 1 10.0723 5.1730 -2.2283 46 1 12.1098 3.6711 0.3629 47 1 11.9551 5.0254 -0.7818 48 1 10.9257 4.9644 0.6690 49 1 9.0999 3.3066 0.7693 50 1 10.3359 2.0460 0.5411 51 1 8.0757 1.2513 -0.1413 52 1 9.2021 1.2883 -1.5191 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001198146181.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:39:05 Heat of formation + Delta-G solvation = 18.963334 kcal Electronic energy + Delta-G solvation = -32588.520558 eV Core-core repulsion = 28588.214752 eV Total energy + Delta-G solvation = -4000.305806 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -41.90896 -40.15617 -39.50178 -37.08170 -36.53636 -35.00060 -34.08341 -32.83835 -32.01353 -31.52678 -29.57365 -28.64182 -27.20086 -25.31464 -25.06091 -24.67064 -23.92387 -23.32824 -21.78137 -21.40304 -20.84657 -19.08201 -18.10150 -17.69815 -17.51652 -16.81556 -16.47229 -16.30818 -16.05658 -16.01598 -15.95994 -15.70654 -15.62823 -15.18311 -14.95681 -14.62378 -14.48601 -14.27385 -14.04451 -13.78110 -13.55675 -13.55260 -13.15130 -13.04377 -13.00286 -12.82164 -12.75802 -12.57525 -12.37088 -12.33174 -12.06460 -11.99628 -11.94629 -11.86582 -11.75488 -11.39193 -11.05164 -10.82251 -10.51426 -9.96562 -9.89280 -9.49007 -9.24285 -9.02386 -8.17384 -5.88912 0.00147 0.04425 1.35587 1.43414 1.46187 2.32731 2.48673 2.69057 2.86876 2.90864 3.06458 3.31242 3.50228 3.77805 3.92089 3.98253 4.00291 4.05030 4.11880 4.12272 4.22558 4.23972 4.26433 4.38531 4.45538 4.47706 4.50647 4.57580 4.59989 4.63247 4.70585 4.72226 4.81130 4.83621 4.91340 4.94010 4.97345 5.01167 5.04651 5.08030 5.18570 5.20393 5.41212 5.46233 5.50182 5.56877 5.65475 5.83657 5.97476 6.04445 6.16237 6.34622 6.91153 7.02097 7.26740 7.70595 8.42182 8.87636 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.008783 B = 0.004816 C = 0.003538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3187.134694 B = 5812.729440 C = 7912.850214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.115 4.115 3 C -0.108 4.108 4 C 0.093 3.907 5 N -0.461 5.461 6 C -0.343 4.343 7 H 0.079 0.921 8 C 0.024 3.976 9 N -0.852 5.852 10 Si 0.957 3.043 11 H -0.289 1.289 12 H -0.289 1.289 13 H -0.256 1.256 14 C 0.504 3.496 15 O -0.553 6.553 16 C -0.055 4.055 17 C -0.149 4.149 18 C 0.098 3.902 19 N -0.482 5.482 20 C 0.077 3.923 21 C 0.064 3.936 22 N -0.512 5.512 23 C 0.078 3.922 24 C 0.064 3.936 25 N -0.540 5.540 26 C 0.025 3.975 27 C 0.061 3.939 28 C 0.067 3.933 29 H 0.046 0.954 30 H 0.049 0.951 31 H 0.071 0.929 32 H 0.073 0.927 33 H 0.067 0.933 34 H 0.049 0.951 35 H 0.041 0.959 36 H 0.086 0.914 37 H 0.048 0.952 38 H 0.256 0.744 39 H 0.140 0.860 40 H 0.195 0.805 41 H 0.173 0.827 42 H 0.062 0.938 43 H 0.054 0.946 44 H 0.013 0.987 45 H 0.101 0.899 46 H 0.087 0.913 47 H 0.081 0.919 48 H 0.014 0.986 49 H 0.015 0.985 50 H 0.108 0.892 51 H 0.070 0.930 52 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.810 -11.546 -2.749 14.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.153 4.153 3 C -0.146 4.146 4 C -0.029 4.029 5 N -0.182 5.182 6 C -0.470 4.470 7 H 0.097 0.903 8 C -0.183 4.183 9 N -0.488 5.488 10 Si 0.783 3.217 11 H -0.215 1.215 12 H -0.215 1.215 13 H -0.181 1.181 14 C 0.292 3.708 15 O -0.431 6.431 16 C -0.067 4.067 17 C -0.170 4.170 18 C -0.057 4.057 19 N -0.191 5.191 20 C -0.084 4.084 21 C -0.034 4.034 22 N -0.235 5.235 23 C -0.048 4.048 24 C -0.064 4.064 25 N -0.265 5.265 26 C -0.123 4.123 27 C -0.067 4.067 28 C -0.059 4.059 29 H 0.065 0.935 30 H 0.068 0.932 31 H 0.090 0.910 32 H 0.092 0.908 33 H 0.085 0.915 34 H 0.067 0.933 35 H 0.060 0.940 36 H 0.104 0.896 37 H 0.066 0.934 38 H 0.065 0.935 39 H 0.157 0.843 40 H 0.212 0.788 41 H 0.190 0.810 42 H 0.080 0.920 43 H 0.072 0.928 44 H 0.031 0.969 45 H 0.119 0.881 46 H 0.106 0.894 47 H 0.100 0.900 48 H 0.033 0.967 49 H 0.034 0.966 50 H 0.126 0.874 51 H 0.089 0.911 52 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 8.208 -11.386 -3.447 14.453 hybrid contribution -0.708 2.098 1.473 2.660 sum 7.501 -9.288 -1.973 12.100 Atomic orbital electron populations 1.21735 0.95222 1.02112 1.01451 1.21468 0.96424 0.94745 1.02624 1.21629 0.94329 0.97377 1.01278 1.21963 0.95389 0.84136 1.01438 1.43423 1.35364 1.09540 1.29878 1.19054 1.45121 0.90826 0.92003 0.90318 1.25737 0.94979 1.00427 0.97202 1.69984 1.42636 1.17570 1.18581 0.85571 0.78087 0.78445 0.79629 1.21519 1.21526 1.18074 1.17905 0.81082 0.87290 0.84553 1.90574 1.57058 1.21533 1.73971 1.20948 0.93934 0.95224 0.96637 1.22465 1.00674 0.96895 0.96965 1.23098 0.92360 0.95709 0.94560 1.67509 1.02751 1.23186 1.25693 1.23465 1.00378 0.92699 0.91822 1.19705 0.91377 0.96423 0.95887 1.59065 1.14783 1.20344 1.29290 1.22040 0.94095 0.94964 0.93714 1.22085 0.93193 0.94096 0.97063 1.62301 1.14842 1.20418 1.28929 1.22430 0.94650 0.98122 0.97101 1.22158 0.95078 0.95810 0.93680 1.22226 0.92754 0.93665 0.97260 0.93497 0.93215 0.91025 0.90820 0.91466 0.93262 0.94014 0.89608 0.93410 0.93488 0.84269 0.78791 0.80958 0.92002 0.92763 0.96907 0.88126 0.89436 0.90007 0.96713 0.96639 0.87405 0.91115 0.91762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.33 9.91 71.98 0.71 -2.62 16 2 C -0.11 -2.88 5.93 30.59 0.18 -2.70 16 3 C -0.11 -3.80 5.04 30.59 0.15 -3.65 16 4 C 0.09 3.63 5.17 86.38 0.45 4.08 16 5 N -0.46 -23.25 2.78 -639.10 -1.78 -25.03 16 6 C -0.34 -18.96 8.18 84.11 0.69 -18.27 16 7 H 0.08 4.21 7.92 -2.91 -0.02 4.19 16 8 C 0.02 1.35 4.30 84.96 0.37 1.72 16 9 N -0.85 -51.94 11.28 21.68 0.24 -51.70 16 10 Si 0.96 46.37 29.61 68.60 2.03 48.41 16 11 H -0.29 -14.37 7.11 99.48 0.71 -13.67 16 12 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 13 H -0.26 -11.38 7.11 99.48 0.71 -10.67 16 14 C 0.50 26.38 6.24 86.71 0.54 26.93 16 15 O -0.55 -33.89 13.78 -4.05 -0.06 -33.94 16 16 C -0.06 -2.31 5.07 -19.78 -0.10 -2.41 16 17 C -0.15 -5.11 7.44 22.63 0.17 -4.95 16 18 C 0.10 2.70 11.15 84.59 0.94 3.64 16 19 N -0.48 -14.14 10.32 -195.45 -2.02 -16.16 16 20 C 0.08 2.30 9.83 84.95 0.83 3.13 16 21 C 0.06 2.32 4.71 38.83 0.18 2.50 16 22 N -0.51 -18.58 3.74 -693.56 -2.59 -21.17 16 23 C 0.08 2.55 5.36 86.31 0.46 3.01 16 24 C 0.06 1.91 5.62 86.31 0.49 2.40 16 25 N -0.54 -13.85 4.97 -921.93 -4.58 -18.43 16 26 C 0.02 0.51 9.60 127.69 1.23 1.73 16 27 C 0.06 1.65 5.62 86.31 0.49 2.14 16 28 C 0.07 1.95 5.31 86.31 0.46 2.41 16 29 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 30 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.07 1.28 8.14 -2.38 -0.02 1.26 16 32 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 33 H 0.07 1.57 8.14 -2.38 -0.02 1.55 16 34 H 0.05 1.95 7.50 -2.39 -0.02 1.93 16 35 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 36 H 0.09 3.00 4.07 -2.39 -0.01 2.99 16 37 H 0.05 1.77 8.14 -2.39 -0.02 1.76 16 38 H 0.26 15.34 8.31 -92.71 -0.77 14.57 16 39 H 0.14 4.76 7.12 -2.91 -0.02 4.74 16 40 H 0.20 3.71 8.06 -2.91 -0.02 3.69 16 41 H 0.17 4.23 7.08 -2.91 -0.02 4.21 16 42 H 0.06 1.71 7.46 -2.39 -0.02 1.69 16 43 H 0.05 2.06 8.13 -2.39 -0.02 2.04 16 44 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 45 H 0.10 2.48 8.13 -2.39 -0.02 2.46 16 46 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 47 H 0.08 1.43 8.13 -2.38 -0.02 1.41 16 48 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 49 H 0.02 0.51 8.14 -2.39 -0.02 0.49 16 50 H 0.11 2.25 8.14 -2.39 -0.02 2.23 16 51 H 0.07 2.13 8.13 -2.39 -0.02 2.11 16 52 H 0.06 1.58 7.26 -2.39 -0.02 1.56 16 Total: -1.00 -74.44 407.31 0.38 -74.06 By element: Atomic # 1 Polarization: 23.98 SS G_CDS: 0.89 Total: 24.87 kcal Atomic # 6 Polarization: 10.85 SS G_CDS: 8.24 Total: 19.09 kcal Atomic # 7 Polarization: -121.76 SS G_CDS: -10.73 Total: -132.48 kcal Atomic # 8 Polarization: -33.89 SS G_CDS: -0.06 Total: -33.94 kcal Atomic # 14 Polarization: 46.37 SS G_CDS: 2.03 Total: 48.41 kcal Total: -74.44 0.38 -74.06 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001198146181.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.024 kcal (2) G-P(sol) polarization free energy of solvation -74.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.061 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds