Wall clock time and date at job start Wed Apr 1 2020 03:55:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.46968 * 2 1 4 4 C 1.53001 * 109.47157 * 240.00057 * 2 1 3 5 5 C 1.52995 * 109.46984 * 294.99946 * 4 2 1 6 6 H 1.09002 * 109.47388 * 55.00093 * 5 4 2 7 7 C 1.50703 * 109.47098 * 175.00051 * 5 4 2 8 8 O 1.21277 * 120.00017 * 0.02562 * 7 5 4 9 9 N 1.34779 * 119.99838 * 179.97438 * 7 5 4 10 10 C 1.47291 * 136.54561 * 359.62929 * 9 7 5 11 11 C 1.54353 * 87.50599 * 151.47220 * 10 9 7 12 12 H 1.08997 * 115.79104 * 141.80434 * 11 10 9 13 13 C 1.53067 * 111.57723 * 274.17036 * 11 10 9 14 14 C 1.53140 * 109.21319 * 142.37313 * 13 11 10 15 15 N 1.46537 * 108.25655 * 301.59334 * 14 13 11 16 16 C 1.36936 * 119.73996 * 236.39608 * 15 14 13 17 17 H 1.08008 * 120.00044 * 25.20251 * 16 15 14 18 18 C 1.38805 * 120.00361 * 205.20097 * 16 15 14 19 19 N 1.31622 * 120.00110 * 14.48428 * 18 16 15 20 20 Si 1.86806 * 120.00330 * 194.48640 * 18 16 15 21 21 H 1.48498 * 109.47125 * 89.99856 * 20 18 16 22 22 H 1.48492 * 109.47144 * 209.99855 * 20 18 16 23 23 H 1.48502 * 109.46597 * 329.99755 * 20 18 16 24 24 C 1.45690 * 120.52229 * 56.42233 * 15 14 13 25 25 C 1.46466 * 136.54156 * 179.97438 * 9 7 5 26 26 H 1.08999 * 111.43887 * 97.06730 * 25 9 7 27 27 N 1.46499 * 109.47305 * 295.00281 * 5 4 2 28 28 C 1.36879 * 126.40176 * 120.00204 * 27 5 4 29 29 C 1.34672 * 106.81924 * 180.02562 * 28 27 5 30 30 N 1.34126 * 108.02255 * 359.97438 * 29 28 27 31 31 C 1.30503 * 109.25235 * 359.72500 * 30 29 28 32 32 H 1.09001 * 109.46999 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.47182 * 300.00256 * 1 2 3 34 34 H 1.09001 * 109.47313 * 59.99822 * 1 2 3 35 35 H 1.09002 * 109.47077 * 119.99685 * 2 1 3 36 36 H 1.09002 * 109.46965 * 299.99754 * 3 2 1 37 37 H 1.08997 * 109.47378 * 59.99864 * 3 2 1 38 38 H 1.08998 * 109.47139 * 180.02562 * 3 2 1 39 39 H 1.08994 * 109.46921 * 54.99683 * 4 2 1 40 40 H 1.08997 * 109.46861 * 174.99992 * 4 2 1 41 41 H 1.09004 * 113.52570 * 266.10141 * 10 9 7 42 42 H 1.09003 * 113.52818 * 36.73240 * 10 9 7 43 43 H 1.09004 * 109.51092 * 22.45845 * 13 11 10 44 44 H 1.08993 * 109.51380 * 262.30176 * 13 11 10 45 45 H 1.09002 * 109.70681 * 181.90286 * 14 13 11 46 46 H 1.08995 * 109.74332 * 61.30895 * 14 13 11 47 47 H 0.97000 * 120.00108 * 180.02562 * 19 18 16 48 48 H 1.08999 * 108.79389 * 199.10933 * 24 15 14 49 49 H 1.09000 * 108.79329 * 80.89703 * 24 15 14 50 50 H 1.07996 * 126.58943 * 0.03131 * 28 27 5 51 51 H 1.07999 * 125.98634 * 179.97438 * 29 28 27 52 52 H 1.08001 * 125.65049 * 180.29197 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 1.6353 -2.1954 -1.1880 6 1 0.5563 -2.2707 -1.0527 7 6 2.0294 -2.8784 -2.4722 8 8 2.5802 -2.2482 -3.3499 9 7 1.7707 -4.1897 -2.6450 10 6 1.1531 -5.2705 -1.8576 11 6 0.7450 -5.9212 -3.1965 12 1 0.8105 -7.0085 -3.2348 13 6 -0.5838 -5.3629 -3.7118 14 6 -0.5187 -5.2330 -5.2363 15 7 0.6019 -4.3514 -5.5744 16 6 0.3807 -3.2309 -6.3299 17 1 -0.5958 -2.7693 -6.3382 18 6 1.4112 -2.6885 -7.0852 19 7 2.5032 -3.3887 -7.3077 20 14 1.2483 -0.9645 -7.7860 21 1 1.7799 0.0193 -6.8088 22 1 2.0182 -0.8700 -9.0522 23 1 -0.1829 -0.6724 -8.0538 24 6 1.9496 -4.6577 -5.1136 25 6 1.9820 -5.1854 -3.6982 26 1 2.8823 -5.7724 -3.5167 27 7 2.3147 -2.8420 -0.0625 28 6 1.7154 -3.4531 1.0056 29 6 2.7037 -3.9091 1.7986 30 7 3.8746 -3.5858 1.2299 31 6 3.6494 -2.9519 0.1117 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5139 0.8899 34 1 -0.3634 0.5139 -0.8900 35 1 1.8934 -0.5138 0.8900 36 1 1.6767 1.9563 -0.8900 37 1 1.6767 1.9564 0.8899 38 1 3.1300 1.4426 -0.0005 39 1 1.6054 -0.2618 -2.1369 40 1 3.1263 -0.6443 -1.2951 41 1 1.8722 -5.8600 -1.2888 42 1 0.3059 -4.9411 -1.2560 43 1 -0.7625 -4.3824 -3.2702 44 1 -1.3935 -6.0393 -3.4382 45 1 -1.4490 -4.8043 -5.6088 46 1 -0.3617 -6.2148 -5.6830 47 1 3.2235 -3.0095 -7.8352 48 1 2.5526 -3.7511 -5.1642 49 1 2.3863 -5.4044 -5.7768 50 1 0.6539 -3.5508 1.1790 51 1 2.5758 -4.4418 2.7294 52 1 4.4052 -2.5748 -0.5614 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001221635866.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:55:39 Heat of formation + Delta-G solvation = 93.611453 kcal Electronic energy + Delta-G solvation = -33234.716315 eV Core-core repulsion = 29237.647494 eV Total energy + Delta-G solvation = -3997.068821 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -42.25510 -40.56711 -38.42657 -36.61226 -35.29527 -33.68933 -32.20004 -30.21027 -29.94173 -29.25995 -28.69752 -27.37315 -27.02373 -24.76605 -23.89803 -22.83187 -21.64647 -21.31424 -21.07675 -20.13897 -19.65202 -18.09610 -17.58430 -16.69396 -16.16832 -15.95415 -15.71288 -15.33724 -14.57951 -14.50651 -14.25927 -14.11788 -13.99578 -13.80267 -13.55108 -13.51347 -13.31733 -13.05048 -12.89417 -12.58142 -12.51798 -12.35649 -12.27604 -11.97878 -11.88080 -11.53096 -11.21862 -11.05638 -10.92066 -10.80529 -10.73126 -10.70980 -10.53497 -10.24039 -10.13355 -9.97945 -9.90050 -9.83627 -9.51371 -9.01714 -8.52846 -8.35290 -8.25756 -6.64988 -5.70209 -3.12799 2.01485 2.33940 3.03524 3.17749 3.27511 3.44109 3.49560 3.51691 4.25537 4.46029 4.54201 4.59291 4.65508 4.72214 4.74795 4.81588 4.89638 5.05493 5.13839 5.35703 5.37098 5.39920 5.45412 5.46061 5.48225 5.54553 5.57617 5.62561 5.66219 5.67254 5.76309 5.79631 5.82363 5.94363 5.99847 6.07143 6.09659 6.20456 6.22071 6.28676 6.31043 6.43842 6.51818 6.69721 6.71885 6.92520 7.10972 7.42234 7.71158 7.88403 8.06419 8.14356 8.47398 8.52602 9.30707 9.94761 10.42288 11.37896 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.010365 B = 0.004682 C = 0.003757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2700.651351 B = 5978.667857 C = 7450.061029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.096 4.096 3 C -0.145 4.145 4 C -0.110 4.110 5 C 0.123 3.877 6 H 0.118 0.882 7 C 0.531 3.469 8 O -0.498 6.498 9 N -0.622 5.622 10 C 0.101 3.899 11 C -0.114 4.114 12 H 0.093 0.907 13 C -0.114 4.114 14 C 0.148 3.852 15 N -0.584 5.584 16 C -0.255 4.255 17 H 0.062 0.938 18 C 0.013 3.987 19 N -0.903 5.903 20 Si 0.900 3.100 21 H -0.286 1.286 22 H -0.292 1.292 23 H -0.281 1.281 24 C 0.168 3.832 25 C 0.120 3.880 26 H 0.073 0.927 27 N -0.440 5.440 28 C -0.055 4.055 29 C -0.031 4.031 30 N -0.495 5.495 31 C 0.193 3.807 32 H 0.051 0.949 33 H 0.056 0.944 34 H 0.059 0.941 35 H 0.070 0.930 36 H 0.057 0.943 37 H 0.054 0.946 38 H 0.055 0.945 39 H 0.096 0.904 40 H 0.078 0.922 41 H 0.077 0.923 42 H 0.067 0.933 43 H 0.058 0.942 44 H 0.055 0.945 45 H 0.056 0.944 46 H 0.020 0.980 47 H 0.252 0.748 48 H 0.104 0.896 49 H 0.030 0.970 50 H 0.170 0.830 51 H 0.166 0.834 52 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.618 -0.359 17.792 18.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.115 4.115 3 C -0.202 4.202 4 C -0.148 4.148 5 C 0.017 3.983 6 H 0.135 0.865 7 C 0.317 3.683 8 O -0.371 6.371 9 N -0.358 5.358 10 C -0.022 4.022 11 C -0.133 4.133 12 H 0.111 0.889 13 C -0.153 4.153 14 C 0.021 3.979 15 N -0.307 5.307 16 C -0.384 4.384 17 H 0.080 0.920 18 C -0.186 4.186 19 N -0.548 5.548 20 Si 0.730 3.270 21 H -0.213 1.213 22 H -0.218 1.218 23 H -0.207 1.207 24 C 0.042 3.958 25 C 0.016 3.984 26 H 0.091 0.909 27 N -0.124 5.124 28 C -0.188 4.188 29 C -0.179 4.179 30 N -0.213 5.213 31 C -0.089 4.089 32 H 0.070 0.930 33 H 0.075 0.925 34 H 0.079 0.921 35 H 0.089 0.911 36 H 0.077 0.923 37 H 0.073 0.927 38 H 0.074 0.926 39 H 0.114 0.886 40 H 0.097 0.903 41 H 0.095 0.905 42 H 0.086 0.914 43 H 0.076 0.924 44 H 0.074 0.926 45 H 0.074 0.926 46 H 0.038 0.962 47 H 0.062 0.938 48 H 0.122 0.878 49 H 0.048 0.952 50 H 0.187 0.813 51 H 0.183 0.817 52 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -3.409 0.186 17.399 17.731 hybrid contribution -0.817 0.955 -0.539 1.367 sum -4.226 1.141 16.860 17.419 Atomic orbital electron populations 1.21914 0.95103 1.01520 1.02173 1.21117 0.95959 0.96609 0.97779 1.21791 1.01122 0.95431 1.01859 1.21847 1.02902 0.90468 0.99605 1.21757 0.99313 0.93966 0.83282 0.86465 1.19655 0.80100 0.80606 0.87958 1.90847 1.40586 1.62891 1.42754 1.49435 1.59895 1.06003 1.20441 1.23338 0.96384 0.87184 0.95329 1.22821 0.96658 0.99078 0.94778 0.88908 1.21826 0.93776 0.99704 1.00022 1.20723 0.92257 0.93861 0.91050 1.43456 1.02553 1.25434 1.59250 1.19085 0.97393 1.02009 1.19920 0.91986 1.24917 0.97547 0.98510 0.97617 1.70004 1.07610 1.35469 1.41669 0.86333 0.77241 0.85317 0.78093 1.21310 1.21828 1.20691 1.20182 0.87893 1.01734 0.86039 1.22706 0.96349 0.86107 0.93240 0.90940 1.45473 1.07507 1.41890 1.17516 1.22667 0.99846 1.05262 0.91046 1.22223 0.88021 1.05986 1.01657 1.70336 1.27971 1.15815 1.07206 1.24895 0.84003 1.02533 0.97496 0.93018 0.92531 0.92145 0.91131 0.92340 0.92671 0.92581 0.88599 0.90295 0.90485 0.91440 0.92358 0.92618 0.92580 0.96238 0.93754 0.87829 0.95192 0.81315 0.81653 0.78596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 8.96 37.16 0.33 -1.04 16 2 C -0.10 -0.98 2.86 -90.62 -0.26 -1.24 16 3 C -0.14 -1.38 9.19 37.16 0.34 -1.04 16 4 C -0.11 -1.39 3.50 -26.73 -0.09 -1.48 16 5 C 0.12 1.61 2.49 -69.08 -0.17 1.44 16 6 H 0.12 1.38 6.28 -51.93 -0.33 1.05 16 7 C 0.53 9.49 7.23 -10.98 -0.08 9.41 16 8 O -0.50 -11.36 15.17 5.56 0.08 -11.28 16 9 N -0.62 -10.51 3.33 -187.52 -0.62 -11.14 16 10 C 0.10 1.31 7.72 -11.39 -0.09 1.22 16 11 C -0.11 -1.67 4.57 -90.17 -0.41 -2.08 16 12 H 0.09 1.17 8.14 -51.93 -0.42 0.74 16 13 C -0.11 -1.78 5.71 -26.62 -0.15 -1.94 16 14 C 0.15 2.94 6.46 -3.95 -0.03 2.91 16 15 N -0.58 -14.42 3.03 -174.92 -0.53 -14.95 16 16 C -0.25 -7.07 9.53 -15.06 -0.14 -7.21 16 17 H 0.06 1.70 7.83 -52.48 -0.41 1.29 16 18 C 0.01 0.37 4.94 -17.43 -0.09 0.28 16 19 N -0.90 -26.91 10.94 55.49 0.61 -26.30 16 20 Si 0.90 22.76 29.58 -169.99 -5.03 17.73 16 21 H -0.29 -7.39 7.11 56.52 0.40 -6.98 16 22 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 23 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 24 C 0.17 4.04 4.59 -5.44 -0.02 4.02 16 25 C 0.12 2.21 4.02 -77.70 -0.31 1.90 16 26 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 27 N -0.44 -5.25 1.91 -112.70 -0.21 -5.46 16 28 C -0.06 -0.57 11.54 -16.56 -0.19 -0.76 16 29 C -0.03 -0.36 11.87 -17.81 -0.21 -0.57 16 30 N -0.50 -7.03 11.25 -14.66 -0.16 -7.20 16 31 C 0.19 2.61 11.59 -90.37 -1.05 1.56 16 32 H 0.05 0.45 6.46 -51.93 -0.34 0.12 16 33 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.07 0.76 7.62 -51.93 -0.40 0.37 16 36 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 37 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 38 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.10 1.38 7.95 -51.93 -0.41 0.96 16 40 H 0.08 1.05 7.81 -51.93 -0.41 0.65 16 41 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 42 H 0.07 0.76 8.07 -51.93 -0.42 0.34 16 43 H 0.06 0.99 7.69 -51.93 -0.40 0.59 16 44 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 45 H 0.06 1.11 7.87 -51.93 -0.41 0.70 16 46 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 47 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 48 H 0.10 2.94 4.96 -51.93 -0.26 2.68 16 49 H 0.03 0.79 7.99 -51.93 -0.42 0.38 16 50 H 0.17 1.28 8.06 -52.49 -0.42 0.86 16 51 H 0.17 1.51 8.06 -52.49 -0.42 1.08 16 52 H 0.20 2.56 8.06 -52.49 -0.42 2.13 16 LS Contribution 407.74 15.07 6.14 6.14 Total: -1.00 -33.28 407.74 -11.17 -44.45 By element: Atomic # 1 Polarization: 11.45 SS G_CDS: -8.82 Total: 2.63 kcal Atomic # 6 Polarization: 8.00 SS G_CDS: -2.63 Total: 5.37 kcal Atomic # 7 Polarization: -64.12 SS G_CDS: -0.93 Total: -65.05 kcal Atomic # 8 Polarization: -11.36 SS G_CDS: 0.08 Total: -11.28 kcal Atomic # 14 Polarization: 22.76 SS G_CDS: -5.03 Total: 17.73 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -33.28 -11.17 -44.45 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001221635866.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.058 kcal (2) G-P(sol) polarization free energy of solvation -33.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.446 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds