Wall clock time and date at job start Wed Apr 1 2020 04:36:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.47076 * 2 1 4 4 C 1.53001 * 109.47256 * 120.00295 * 2 1 3 5 5 H 1.09002 * 109.47177 * 299.99806 * 4 2 1 6 6 C 1.53003 * 109.47166 * 59.99849 * 4 2 1 7 7 N 1.46503 * 109.47216 * 175.00027 * 6 4 2 8 8 C 1.34770 * 120.00095 * 180.02562 * 7 6 4 9 9 O 1.21599 * 120.00203 * 359.97438 * 8 7 6 10 10 C 1.47427 * 120.00194 * 180.02562 * 8 7 6 11 11 C 1.39981 * 120.60681 * 354.67015 * 10 8 7 12 12 C 1.38328 * 118.36869 * 180.02562 * 11 10 8 13 13 C 1.38375 * 119.51034 * 0.02562 * 12 11 10 14 14 N 1.31858 * 121.21644 * 359.97438 * 13 12 11 15 15 C 1.32432 * 121.77069 * 359.70296 * 14 13 12 16 16 N 1.38260 * 119.82331 * 180.31189 * 15 14 13 17 17 C 1.48533 * 111.00184 * 280.40482 * 16 15 14 18 18 C 1.54942 * 103.22956 * 159.71849 * 17 16 15 19 19 C 1.54597 * 102.92216 * 322.58993 * 18 17 16 20 20 C 1.47903 * 111.00446 * 37.80333 * 16 15 14 21 21 N 1.46496 * 109.47078 * 179.97438 * 4 2 1 22 22 C 1.36940 * 120.00241 * 85.00345 * 21 4 2 23 23 H 1.08002 * 119.99241 * 359.97438 * 22 21 4 24 24 C 1.38807 * 120.00094 * 179.97438 * 22 21 4 25 25 N 1.31617 * 120.00123 * 359.72170 * 24 22 21 26 26 Si 1.86801 * 119.99725 * 179.97438 * 24 22 21 27 27 H 1.48507 * 109.47097 * 269.72490 * 26 24 22 28 28 H 1.48493 * 109.47335 * 29.72177 * 26 24 22 29 29 H 1.48503 * 109.46993 * 149.72536 * 26 24 22 30 30 H 1.09002 * 109.46869 * 299.99710 * 1 2 3 31 31 H 1.08998 * 109.46969 * 59.99974 * 1 2 3 32 32 H 1.09000 * 109.47027 * 180.02562 * 1 2 3 33 33 H 1.09009 * 109.47228 * 240.00112 * 2 1 3 34 34 H 1.09004 * 109.47241 * 180.02562 * 3 2 1 35 35 H 1.08998 * 109.47243 * 299.99858 * 3 2 1 36 36 H 1.09002 * 109.47034 * 60.00391 * 3 2 1 37 37 H 1.09002 * 109.47248 * 295.00006 * 6 4 2 38 38 H 1.09003 * 109.47089 * 54.99929 * 6 4 2 39 39 H 0.97006 * 119.99616 * 359.97438 * 7 6 4 40 40 H 1.08000 * 120.81199 * 359.97438 * 11 10 8 41 41 H 1.08003 * 120.24866 * 180.02562 * 12 11 10 42 42 H 1.07998 * 119.39419 * 180.02562 * 13 12 11 43 43 H 1.08997 * 110.66935 * 278.16035 * 17 16 15 44 44 H 1.09004 * 110.66392 * 41.28877 * 17 16 15 45 45 H 1.08992 * 110.72642 * 204.22890 * 18 17 16 46 46 H 1.08998 * 110.71635 * 80.94563 * 18 17 16 47 47 H 1.09000 * 110.30730 * 263.04044 * 19 18 17 48 48 H 1.08996 * 110.30733 * 140.86793 * 19 18 17 49 49 H 1.09006 * 109.91327 * 333.51108 * 20 16 15 50 50 H 1.08995 * 109.91801 * 94.80120 * 20 16 15 51 51 H 0.97007 * 120.00297 * 264.99974 * 21 4 2 52 52 H 0.96991 * 120.00338 * 0.27675 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6767 -0.2075 2.1392 6 6 1.5300 -2.1638 1.2492 7 7 2.1142 -2.8884 2.3806 8 6 1.8061 -4.1849 2.5820 9 8 1.0429 -4.7531 1.8249 10 6 2.3935 -4.9139 3.7208 11 6 3.3566 -4.3068 4.5353 12 6 3.8773 -5.0335 5.5909 13 6 3.4374 -6.3269 5.8106 14 7 2.5291 -6.8814 5.0320 15 6 1.9931 -6.2289 4.0118 16 7 1.0390 -6.8472 3.2251 17 6 1.6716 -7.7655 2.2439 18 6 0.5138 -8.7177 1.8518 19 6 -0.2437 -8.9085 3.1859 20 6 0.1409 -7.6895 4.0446 21 7 3.5050 -0.7218 1.2489 22 6 4.1902 0.3528 1.7498 23 1 3.6505 1.2008 2.1448 24 6 5.5783 0.3520 1.7500 25 7 6.2359 -0.6838 1.2736 26 14 6.5130 1.8182 2.4327 27 1 6.7669 2.7945 1.3429 28 1 5.7077 2.4655 3.4993 29 1 7.8073 1.3602 2.9986 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.8934 -0.5139 -0.8901 34 1 3.1300 1.4425 -0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6767 1.9563 0.8900 37 1 0.4437 -2.1652 1.3388 38 1 1.8183 -2.6511 0.3177 39 1 2.7234 -2.4351 2.9843 40 1 3.6856 -3.2961 4.3437 41 1 4.6216 -4.5946 6.2388 42 1 3.8449 -6.8924 6.6356 43 1 2.0270 -7.2134 1.3739 44 1 2.4866 -8.3215 2.7074 45 1 0.9028 -9.6692 1.4897 46 1 -0.1307 -8.2539 1.1051 47 1 0.0744 -9.8301 3.6731 48 1 -1.3195 -8.9238 3.0111 49 1 0.6597 -8.0185 4.9451 50 1 -0.7534 -7.1271 4.3127 51 1 3.9897 -1.4834 0.8938 52 1 5.7507 -1.4450 0.9188 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001271862002.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:36:16 Heat of formation + Delta-G solvation = 27.292126 kcal Electronic energy + Delta-G solvation = -31439.165586 eV Core-core repulsion = 27439.220944 eV Total energy + Delta-G solvation = -3999.944643 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.99911 -39.00928 -38.21346 -37.22693 -33.99664 -33.46219 -32.89222 -32.48072 -30.25909 -29.31117 -28.95284 -27.81898 -26.09205 -24.57657 -23.82605 -23.24885 -21.97337 -21.16169 -20.89554 -20.28715 -19.39432 -17.97344 -17.47524 -17.05269 -16.91168 -15.73374 -15.40381 -15.13113 -14.95457 -14.80856 -14.51568 -14.23563 -13.97348 -13.72904 -13.68810 -13.43175 -13.26689 -13.14873 -12.79629 -12.61817 -12.25266 -12.21153 -12.07935 -11.93996 -11.66256 -11.46200 -11.25603 -11.19247 -10.94994 -10.80234 -10.66448 -10.42198 -10.18006 -10.07816 -9.99319 -9.96829 -9.93330 -9.56787 -9.24564 -9.13553 -8.94504 -8.61334 -8.33154 -7.12383 -6.15807 -3.17506 0.63949 1.05696 3.08583 3.46024 3.46786 3.50094 3.62996 3.63753 3.82599 4.27369 4.58324 4.59370 4.69333 4.75172 4.82094 4.87907 5.02381 5.17369 5.23749 5.27257 5.30546 5.40723 5.44020 5.50566 5.58774 5.67195 5.69808 5.71336 5.71981 5.83629 5.85209 5.90794 5.93689 5.97569 6.01843 6.09930 6.13522 6.17143 6.31216 6.31996 6.38543 6.48360 6.56843 6.63186 6.66925 6.90227 7.00683 7.21130 7.24878 7.70727 7.76003 7.94514 8.61203 8.67980 9.12997 9.99832 10.15183 11.31110 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.011605 B = 0.003173 C = 0.002652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2412.253525 B = 8821.139175 C =10557.485946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.108 4.108 3 C -0.138 4.138 4 C 0.175 3.825 5 H 0.054 0.946 6 C 0.116 3.884 7 N -0.715 5.715 8 C 0.555 3.445 9 O -0.511 6.511 10 C -0.161 4.161 11 C -0.033 4.033 12 C -0.186 4.186 13 C 0.131 3.869 14 N -0.523 5.523 15 C 0.339 3.661 16 N -0.444 5.444 17 C 0.053 3.947 18 C -0.119 4.119 19 C -0.127 4.127 20 C 0.031 3.969 21 N -0.733 5.733 22 C -0.327 4.327 23 H 0.068 0.932 24 C -0.042 4.042 25 N -0.942 5.942 26 Si 1.077 2.923 27 H -0.296 1.296 28 H -0.295 1.295 29 H -0.289 1.289 30 H 0.049 0.951 31 H 0.046 0.954 32 H 0.051 0.949 33 H 0.061 0.939 34 H 0.086 0.914 35 H 0.031 0.969 36 H 0.040 0.960 37 H 0.067 0.933 38 H 0.061 0.939 39 H 0.405 0.595 40 H 0.147 0.853 41 H 0.143 0.857 42 H 0.158 0.842 43 H 0.088 0.912 44 H 0.048 0.952 45 H 0.072 0.928 46 H 0.078 0.922 47 H 0.066 0.934 48 H 0.071 0.929 49 H 0.071 0.929 50 H 0.075 0.925 51 H 0.367 0.633 52 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.026 -11.823 6.540 16.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.130 4.130 3 C -0.196 4.196 4 C 0.065 3.935 5 H 0.072 0.928 6 C -0.008 4.008 7 N -0.368 5.368 8 C 0.340 3.660 9 O -0.386 6.386 10 C -0.168 4.168 11 C -0.060 4.060 12 C -0.206 4.206 13 C -0.028 4.028 14 N -0.235 5.235 15 C 0.108 3.892 16 N -0.165 5.165 17 C -0.073 4.073 18 C -0.157 4.157 19 C -0.165 4.165 20 C -0.096 4.096 21 N -0.376 5.376 22 C -0.457 4.457 23 H 0.086 0.914 24 C -0.241 4.241 25 N -0.587 5.587 26 Si 0.908 3.092 27 H -0.224 1.224 28 H -0.222 1.222 29 H -0.215 1.215 30 H 0.068 0.932 31 H 0.065 0.935 32 H 0.070 0.930 33 H 0.079 0.921 34 H 0.105 0.895 35 H 0.050 0.950 36 H 0.060 0.940 37 H 0.086 0.914 38 H 0.080 0.920 39 H 0.241 0.759 40 H 0.164 0.836 41 H 0.161 0.839 42 H 0.175 0.825 43 H 0.107 0.893 44 H 0.066 0.934 45 H 0.091 0.909 46 H 0.097 0.903 47 H 0.085 0.915 48 H 0.090 0.910 49 H 0.089 0.911 50 H 0.094 0.906 51 H 0.201 0.799 52 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -9.734 -11.853 6.268 16.569 hybrid contribution -0.301 -0.102 0.175 0.363 sum -10.035 -11.955 6.442 16.886 Atomic orbital electron populations 1.21938 0.96734 1.01029 1.00974 1.21707 0.93651 0.97828 0.99825 1.21812 1.04200 0.94561 0.98986 1.20488 0.85727 0.91189 0.96090 0.92813 1.21720 0.97455 0.92983 0.88646 1.45931 1.48948 1.10806 1.31137 1.17757 0.81862 0.81801 0.84612 1.90798 1.34595 1.67458 1.45778 1.20753 1.01311 0.95074 0.99616 1.21957 0.91914 1.00236 0.91848 1.22082 1.02655 0.96237 0.99638 1.22726 0.91246 0.92648 0.96149 1.67762 1.11125 1.37600 1.07056 1.19921 0.89534 0.89957 0.89742 1.62548 1.13367 1.28292 1.12324 1.23177 0.96068 0.92530 0.95483 1.22462 0.96927 0.98712 0.97647 1.22362 1.00827 0.97511 0.95792 1.22965 0.96803 0.93258 0.96564 1.42485 0.99475 1.20880 1.74716 1.20022 0.91538 0.97306 1.36873 0.91447 1.25666 0.93404 1.03668 1.01321 1.70851 1.37407 1.07049 1.43400 0.83267 0.75807 0.74362 0.75743 1.22380 1.22171 1.21520 0.93173 0.93505 0.92981 0.92086 0.89518 0.95009 0.94044 0.91443 0.92043 0.75867 0.83574 0.83948 0.82462 0.89328 0.93381 0.90929 0.90290 0.91484 0.91013 0.91094 0.90621 0.79906 0.93296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.11 8.84 37.16 0.33 -1.78 16 2 C -0.11 -1.84 2.69 -90.62 -0.24 -2.09 16 3 C -0.14 -2.49 8.26 37.15 0.31 -2.19 16 4 C 0.18 3.20 2.18 -67.93 -0.15 3.05 16 5 H 0.05 1.02 8.08 -51.93 -0.42 0.60 16 6 C 0.12 1.97 4.73 -4.04 -0.02 1.95 16 7 N -0.71 -11.99 5.34 -61.38 -0.33 -12.31 16 8 C 0.55 9.63 7.75 -12.52 -0.10 9.53 16 9 O -0.51 -9.93 14.82 5.28 0.08 -9.85 16 10 C -0.16 -2.49 5.91 -104.65 -0.62 -3.11 16 11 C -0.03 -0.44 9.63 -38.90 -0.37 -0.82 16 12 C -0.19 -2.06 10.09 -39.50 -0.40 -2.46 16 13 C 0.13 1.45 11.16 -17.49 -0.20 1.26 16 14 N -0.52 -7.06 8.68 -12.20 -0.11 -7.17 16 15 C 0.34 5.11 5.52 -155.19 -0.86 4.25 16 16 N -0.44 -6.53 3.30 -169.01 -0.56 -7.09 16 17 C 0.05 0.70 6.32 -1.89 -0.01 0.69 16 18 C -0.12 -1.26 7.06 -24.87 -0.18 -1.43 16 19 C -0.13 -1.25 6.93 -25.37 -0.18 -1.43 16 20 C 0.03 0.38 6.59 -2.75 -0.02 0.37 16 21 N -0.73 -16.17 4.44 -53.43 -0.24 -16.40 16 22 C -0.33 -8.12 7.57 -15.06 -0.11 -8.23 16 23 H 0.07 1.68 7.39 -52.49 -0.39 1.29 16 24 C -0.04 -1.13 5.50 -17.43 -0.10 -1.23 16 25 N -0.94 -27.17 13.70 55.49 0.76 -26.41 16 26 Si 1.08 24.45 29.92 -169.99 -5.09 19.36 16 27 H -0.30 -6.66 7.11 56.52 0.40 -6.26 16 28 H -0.29 -6.32 7.11 56.52 0.40 -5.91 16 29 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 30 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.05 0.70 6.54 -51.93 -0.34 0.36 16 33 H 0.06 1.10 8.14 -51.92 -0.42 0.67 16 34 H 0.09 1.85 6.01 -51.93 -0.31 1.54 16 35 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 36 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.07 1.09 6.71 -51.93 -0.35 0.74 16 38 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 39 H 0.40 6.78 6.26 -40.82 -0.26 6.52 16 40 H 0.15 1.91 6.55 -52.49 -0.34 1.57 16 41 H 0.14 1.20 8.06 -52.48 -0.42 0.78 16 42 H 0.16 1.20 8.06 -52.49 -0.42 0.78 16 43 H 0.09 1.30 8.02 -51.93 -0.42 0.88 16 44 H 0.05 0.63 7.99 -51.93 -0.42 0.21 16 45 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 46 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 47 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 48 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 49 H 0.07 0.89 6.57 -51.93 -0.34 0.54 16 50 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 51 H 0.37 8.70 6.63 -40.82 -0.27 8.43 16 52 H 0.26 7.32 6.77 -40.82 -0.28 7.04 16 LS Contribution 407.45 15.07 6.14 6.14 Total: -1.00 -30.21 407.45 -10.66 -40.87 By element: Atomic # 1 Polarization: 24.95 SS G_CDS: -8.42 Total: 16.53 kcal Atomic # 6 Polarization: -0.75 SS G_CDS: -2.91 Total: -3.66 kcal Atomic # 7 Polarization: -68.92 SS G_CDS: -0.47 Total: -69.38 kcal Atomic # 8 Polarization: -9.93 SS G_CDS: 0.08 Total: -9.85 kcal Atomic # 14 Polarization: 24.45 SS G_CDS: -5.09 Total: 19.36 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -30.21 -10.66 -40.87 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271862002.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.161 kcal (2) G-P(sol) polarization free energy of solvation -30.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.869 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds