Wall clock time and date at job start Wed Apr 1 2020 04:02:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.47259 * 2 1 4 4 C 1.52999 * 109.47392 * 120.00255 * 2 1 3 5 5 C 1.52997 * 109.47271 * 240.00314 * 2 1 3 6 6 N 1.46903 * 109.47460 * 66.09266 * 5 2 1 7 7 C 1.46955 * 111.00168 * 150.62817 * 6 5 2 8 8 C 1.53387 * 109.68930 * 52.96013 * 7 6 5 9 9 N 1.46632 * 108.22237 * 49.87459 * 8 7 6 10 10 C 1.34594 * 128.39427 * 163.57370 * 9 8 7 11 11 C 1.36656 * 106.74251 * 180.21616 * 10 9 8 12 12 C 1.47325 * 126.20075 * 179.91585 * 11 10 9 13 13 O 1.21618 * 119.99821 * 0.02562 * 12 11 10 14 14 N 1.34777 * 120.00074 * 179.97438 * 12 11 10 15 15 C 1.47071 * 136.05083 * 359.63402 * 14 12 11 16 16 C 1.53245 * 88.07794 * 207.19880 * 15 14 12 17 17 C 1.50691 * 114.32878 * 220.46937 * 16 15 14 18 18 H 1.08002 * 120.00043 * 93.76132 * 17 16 15 19 19 C 1.37880 * 120.00255 * 273.75709 * 17 16 15 20 20 N 1.31516 * 119.99732 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 120.00430 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.46763 * 0.02562 * 21 19 17 23 23 H 1.48502 * 109.47149 * 120.00109 * 21 19 17 24 24 H 1.48494 * 109.47639 * 240.00798 * 21 19 17 25 25 C 1.47057 * 136.05982 * 180.02562 * 14 12 11 26 26 N 1.35967 * 107.59782 * 359.94033 * 11 10 9 27 27 C 1.29590 * 108.83536 * 359.95059 * 26 11 10 28 28 C 1.47319 * 110.99757 * 274.83042 * 6 5 2 29 29 H 1.08997 * 109.46868 * 44.28186 * 1 2 3 30 30 H 1.08998 * 109.46736 * 164.28484 * 1 2 3 31 31 H 1.08998 * 109.46865 * 284.28252 * 1 2 3 32 32 H 1.09001 * 109.46770 * 59.99934 * 3 2 1 33 33 H 1.09000 * 109.47669 * 179.97438 * 3 2 1 34 34 H 1.09001 * 109.47004 * 300.00458 * 3 2 1 35 35 H 1.09000 * 109.46857 * 59.99863 * 4 2 1 36 36 H 1.09000 * 109.47221 * 180.02562 * 4 2 1 37 37 H 1.09001 * 109.46901 * 300.00227 * 4 2 1 38 38 H 1.09001 * 109.47352 * 186.09511 * 5 2 1 39 39 H 1.09000 * 109.47132 * 306.09636 * 5 2 1 40 40 H 1.09004 * 109.43621 * 173.02582 * 7 6 5 41 41 H 1.08997 * 109.43795 * 292.89008 * 7 6 5 42 42 H 1.08991 * 109.71529 * 169.56017 * 8 7 6 43 43 H 1.08997 * 109.70995 * 290.15371 * 8 7 6 44 44 H 1.07997 * 126.62669 * 0.25182 * 10 9 8 45 45 H 1.09000 * 113.47118 * 321.92743 * 15 14 12 46 46 H 1.08996 * 113.46906 * 92.37944 * 15 14 12 47 47 H 1.09005 * 114.19585 * 87.72902 * 16 15 14 48 48 H 0.96996 * 119.99948 * 179.97438 * 20 19 17 49 49 H 1.09008 * 113.46515 * 267.62542 * 25 14 12 50 50 H 1.08998 * 113.46803 * 38.05973 * 25 14 12 51 51 H 1.09004 * 109.74359 * 45.86224 * 28 6 5 52 52 H 1.08997 * 109.74542 * 166.57637 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 2.0400 -0.7212 -1.2492 6 7 1.6741 0.0510 -2.4442 7 6 2.6510 -0.1534 -3.5229 8 6 2.8324 -1.6550 -3.7780 9 7 1.5044 -2.2589 -3.9254 10 6 1.1844 -3.4577 -4.4468 11 6 -0.1754 -3.5702 -4.3698 12 6 -0.9806 -4.7175 -4.8235 13 8 -0.4355 -5.6840 -5.3213 14 7 -2.3212 -4.6963 -4.6860 15 6 -3.3158 -3.7554 -4.1490 16 6 -4.2176 -4.9584 -3.8523 17 6 -5.6764 -4.7297 -4.1527 18 1 -6.0818 -5.0169 -5.1117 19 6 -6.4938 -4.1537 -3.2034 20 7 -6.0001 -3.8035 -2.0358 21 14 -8.3020 -3.8695 -3.5761 22 1 -8.6054 -4.3472 -4.9491 23 1 -9.1325 -4.6168 -2.5977 24 1 -8.6059 -2.4193 -3.4777 25 6 -3.4324 -5.6068 -5.0005 26 7 -0.6504 -2.4313 -3.7991 27 6 0.3479 -1.6494 -3.5318 28 6 0.3103 -0.2819 -2.8907 29 1 -0.3633 0.7357 -0.7175 30 1 -0.3633 -0.9893 -0.2783 31 1 -0.3633 0.2535 0.9959 32 1 1.6767 1.9563 0.8900 33 1 3.1301 1.4426 0.0005 34 1 1.6767 1.9564 -0.8900 35 1 1.6767 -1.7489 1.2491 36 1 3.1301 -0.7209 1.2494 37 1 1.6767 -0.2075 2.1392 38 1 3.1246 -0.8166 -1.1964 39 1 1.5904 -1.7125 -1.3056 40 1 2.2928 0.3283 -4.4327 41 1 3.6069 0.2835 -3.2342 42 1 3.4083 -1.8059 -4.6910 43 1 3.3528 -2.1107 -2.9357 44 1 1.8698 -4.1895 -4.8480 45 1 -2.9806 -3.2344 -3.2521 46 1 -3.7254 -3.0809 -4.9008 47 1 -4.0450 -5.4167 -2.8784 48 1 -6.5751 -3.3980 -1.3681 49 1 -3.8734 -5.4306 -5.9817 50 1 -3.1961 -6.6565 -4.8263 51 1 -0.3645 -0.2950 -2.0347 52 1 -0.0298 0.4561 -3.6171 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001278111516.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:02:06 Heat of formation + Delta-G solvation = 72.739267 kcal Electronic energy + Delta-G solvation = -31521.227241 eV Core-core repulsion = 27523.253334 eV Total energy + Delta-G solvation = -3997.973907 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.52460 -39.46335 -38.87373 -36.86080 -36.22545 -33.77472 -32.56345 -30.64892 -29.49711 -28.97790 -27.65983 -27.39759 -26.93515 -25.49311 -24.75016 -24.49057 -22.54406 -22.37261 -20.03351 -19.76823 -18.66298 -18.27468 -17.18214 -16.67254 -16.34361 -16.07008 -15.82896 -15.50328 -15.09100 -14.91603 -14.59423 -14.31090 -14.21287 -13.88669 -13.79269 -13.67032 -13.53323 -13.19148 -12.84481 -12.60379 -12.44019 -12.30383 -12.10568 -12.01978 -11.81422 -11.73798 -11.47005 -11.33288 -11.16342 -10.96433 -10.86639 -10.82999 -10.71592 -10.68454 -10.28035 -10.04667 -9.70021 -9.59404 -9.07685 -8.93394 -8.87413 -8.46313 -8.38342 -7.64467 -6.06825 -4.11699 1.76717 2.44051 2.60567 3.29779 3.38114 3.40806 3.41985 3.73709 4.04668 4.06517 4.18707 4.35471 4.42381 4.45134 4.60095 4.65584 4.74232 4.80476 4.97146 5.07608 5.20270 5.22206 5.25986 5.28563 5.30114 5.40768 5.44472 5.46661 5.57765 5.62001 5.66842 5.75524 5.83312 5.92160 6.02018 6.06736 6.19224 6.21802 6.22944 6.35400 6.39527 6.42294 6.53634 6.55643 6.62540 6.84641 6.89113 7.06924 7.17812 7.68676 7.91451 7.98522 8.31729 8.65590 8.91561 8.96348 9.53927 11.02999 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.010673 B = 0.003078 C = 0.002554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2622.909615 B = 9093.948456 C =10960.463902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.061 4.061 3 C -0.129 4.129 4 C -0.143 4.143 5 C 0.056 3.944 6 N -0.522 5.522 7 C 0.042 3.958 8 C 0.066 3.934 9 N -0.459 5.459 10 C 0.028 3.972 11 C -0.043 4.043 12 C 0.615 3.385 13 O -0.575 6.575 14 N -0.626 5.626 15 C 0.116 3.884 16 C 0.030 3.970 17 C -0.514 4.514 18 H 0.063 0.937 19 C 0.068 3.932 20 N -0.884 5.884 21 Si 0.894 3.106 22 H -0.272 1.272 23 H -0.284 1.284 24 H -0.283 1.283 25 C 0.101 3.899 26 N -0.430 5.430 27 C 0.166 3.834 28 C 0.124 3.876 29 H 0.067 0.933 30 H 0.058 0.942 31 H 0.056 0.944 32 H 0.046 0.954 33 H 0.046 0.954 34 H 0.070 0.930 35 H 0.054 0.946 36 H 0.052 0.948 37 H 0.059 0.941 38 H 0.071 0.929 39 H 0.047 0.953 40 H 0.089 0.911 41 H 0.102 0.898 42 H 0.096 0.904 43 H 0.087 0.913 44 H 0.185 0.815 45 H 0.070 0.930 46 H 0.068 0.932 47 H 0.066 0.934 48 H 0.262 0.738 49 H 0.073 0.927 50 H 0.056 0.944 51 H 0.125 0.875 52 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.016 12.205 3.040 24.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.062 4.062 3 C -0.187 4.187 4 C -0.201 4.201 5 C -0.071 4.071 6 N -0.242 5.242 7 C -0.087 4.087 8 C -0.058 4.058 9 N -0.143 5.143 10 C -0.110 4.110 11 C -0.173 4.173 12 C 0.404 3.596 13 O -0.456 6.456 14 N -0.357 5.357 15 C -0.007 4.007 16 C 0.011 3.989 17 C -0.553 4.553 18 H 0.081 0.919 19 C -0.135 4.135 20 N -0.521 5.521 21 Si 0.721 3.279 22 H -0.196 1.196 23 H -0.210 1.210 24 H -0.209 1.209 25 C -0.021 4.021 26 N -0.149 5.149 27 C -0.099 4.099 28 C -0.005 4.005 29 H 0.086 0.914 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.066 0.934 33 H 0.065 0.935 34 H 0.089 0.911 35 H 0.073 0.927 36 H 0.071 0.929 37 H 0.078 0.922 38 H 0.090 0.910 39 H 0.065 0.935 40 H 0.108 0.892 41 H 0.121 0.879 42 H 0.114 0.886 43 H 0.105 0.895 44 H 0.202 0.798 45 H 0.089 0.911 46 H 0.086 0.914 47 H 0.084 0.916 48 H 0.072 0.928 49 H 0.091 0.909 50 H 0.075 0.925 51 H 0.143 0.857 52 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 20.762 12.502 3.225 24.449 hybrid contribution 0.049 -0.925 -0.641 1.127 sum 20.810 11.577 2.584 23.953 Atomic orbital electron populations 1.22127 0.94273 1.02273 1.02100 1.20506 0.96065 0.96171 0.93436 1.21738 1.00064 0.94901 1.01977 1.21879 1.00610 1.00486 0.97081 1.22358 1.00125 0.95129 0.89521 1.62385 1.01596 1.55544 1.04721 1.22633 0.98254 0.91767 0.96055 1.22756 0.82601 0.96494 1.03973 1.45239 1.08305 1.14637 1.46144 1.22292 0.97057 0.88925 1.02729 1.20761 0.91095 0.95961 1.09463 1.16401 0.80406 0.84471 0.78279 1.90712 1.71593 1.34977 1.48339 1.49734 1.03042 1.24171 1.58758 1.23435 0.84541 0.95452 0.97225 1.20341 0.93422 0.91446 0.93705 1.20934 0.92517 1.41075 1.00729 0.91893 1.25018 0.98651 0.95051 0.94796 1.69980 1.35805 1.40946 1.05351 0.86510 0.84968 0.77878 0.78495 1.19624 1.20975 1.20932 1.23377 0.83695 0.94064 1.01005 1.70502 1.28833 1.01677 1.13910 1.24527 0.80750 0.99497 1.05131 1.21491 0.91440 0.86659 1.00932 0.91444 0.92321 0.92518 0.93444 0.93511 0.91110 0.92690 0.92891 0.92225 0.91032 0.93488 0.89224 0.87939 0.88585 0.89529 0.79800 0.91142 0.91373 0.91603 0.92828 0.90886 0.92532 0.85698 0.87909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 6.98 37.16 0.26 -1.16 16 2 C -0.06 -0.49 0.85 -154.51 -0.13 -0.62 16 3 C -0.13 -0.92 8.19 37.16 0.30 -0.62 16 4 C -0.14 -1.09 8.41 37.16 0.31 -0.77 16 5 C 0.06 0.46 2.89 -3.82 -0.01 0.45 16 6 N -0.52 -4.12 3.79 -235.18 -0.89 -5.01 16 7 C 0.04 0.25 5.79 -3.59 -0.02 0.23 16 8 C 0.07 0.47 6.43 -3.77 -0.02 0.45 16 9 N -0.46 -5.60 3.00 -113.35 -0.34 -5.94 16 10 C 0.03 0.43 11.36 -16.91 -0.19 0.23 16 11 C -0.04 -0.84 6.95 -82.91 -0.58 -1.41 16 12 C 0.62 13.89 8.06 -12.56 -0.10 13.79 16 13 O -0.57 -13.87 17.66 5.26 0.09 -13.78 16 14 N -0.63 -14.49 3.69 -186.71 -0.69 -15.18 16 15 C 0.12 2.75 7.32 -8.63 -0.06 2.69 16 16 C 0.03 0.76 3.77 -91.40 -0.34 0.41 16 17 C -0.51 -13.72 8.83 -34.44 -0.30 -14.02 16 18 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 19 C 0.07 1.84 5.46 -17.82 -0.10 1.74 16 20 N -0.88 -24.95 13.26 55.43 0.74 -24.22 16 21 Si 0.89 20.69 29.54 -169.99 -5.02 15.67 16 22 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 23 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 24 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 25 C 0.10 2.28 8.19 -8.52 -0.07 2.21 16 26 N -0.43 -8.00 9.78 -6.97 -0.07 -8.07 16 27 C 0.17 2.36 6.80 -154.61 -1.05 1.30 16 28 C 0.12 1.32 5.71 -4.56 -0.03 1.29 16 29 H 0.07 0.62 6.49 -51.93 -0.34 0.28 16 30 H 0.06 0.67 7.36 -51.93 -0.38 0.28 16 31 H 0.06 0.51 8.04 -51.93 -0.42 0.09 16 32 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.07 0.54 7.45 -51.93 -0.39 0.15 16 35 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 36 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.07 0.48 7.37 -51.93 -0.38 0.10 16 39 H 0.05 0.51 6.87 -51.93 -0.36 0.15 16 40 H 0.09 0.56 8.07 -51.93 -0.42 0.14 16 41 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.09 0.55 7.19 -51.93 -0.37 0.18 16 44 H 0.18 2.38 8.06 -52.49 -0.42 1.96 16 45 H 0.07 1.75 7.46 -51.93 -0.39 1.36 16 46 H 0.07 1.62 8.10 -51.93 -0.42 1.20 16 47 H 0.07 1.81 8.11 -51.93 -0.42 1.38 16 48 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 49 H 0.07 1.58 8.10 -51.92 -0.42 1.16 16 50 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 51 H 0.13 1.41 3.98 -51.93 -0.21 1.20 16 52 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 406.08 15.07 6.12 6.12 Total: -1.00 -32.59 406.08 -10.88 -43.47 By element: Atomic # 1 Polarization: 9.42 SS G_CDS: -8.68 Total: 0.73 kcal Atomic # 6 Polarization: 8.33 SS G_CDS: -2.14 Total: 6.20 kcal Atomic # 7 Polarization: -57.16 SS G_CDS: -1.25 Total: -58.42 kcal Atomic # 8 Polarization: -13.87 SS G_CDS: 0.09 Total: -13.78 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -32.59 -10.88 -43.47 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278111516.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.214 kcal (2) G-P(sol) polarization free energy of solvation -32.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.475 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds