Wall clock time and date at job start Wed Apr 1 2020 04:02:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.47259 * 2 1 4 4 C 1.52999 * 109.47392 * 120.00255 * 2 1 3 5 5 C 1.52997 * 109.47271 * 240.00314 * 2 1 3 6 6 N 1.46903 * 109.47460 * 66.09266 * 5 2 1 7 7 C 1.46955 * 111.00168 * 150.62817 * 6 5 2 8 8 C 1.53387 * 109.68930 * 52.96013 * 7 6 5 9 9 N 1.46632 * 108.22237 * 49.87459 * 8 7 6 10 10 C 1.34594 * 128.39427 * 163.57370 * 9 8 7 11 11 C 1.36656 * 106.74251 * 180.21616 * 10 9 8 12 12 C 1.47325 * 126.20075 * 179.91585 * 11 10 9 13 13 O 1.21618 * 119.99821 * 0.02562 * 12 11 10 14 14 N 1.34777 * 120.00074 * 179.97438 * 12 11 10 15 15 C 1.47071 * 136.05083 * 359.63402 * 14 12 11 16 16 C 1.53245 * 88.07794 * 207.19880 * 15 14 12 17 17 C 1.50691 * 114.32878 * 220.46937 * 16 15 14 18 18 H 1.08002 * 120.00043 * 93.76132 * 17 16 15 19 19 C 1.37880 * 120.00255 * 273.75709 * 17 16 15 20 20 N 1.31516 * 119.99732 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 120.00430 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.46763 * 0.02562 * 21 19 17 23 23 H 1.48502 * 109.47149 * 120.00109 * 21 19 17 24 24 H 1.48494 * 109.47639 * 240.00798 * 21 19 17 25 25 C 1.47057 * 136.05982 * 180.02562 * 14 12 11 26 26 N 1.35967 * 107.59782 * 359.94033 * 11 10 9 27 27 C 1.29590 * 108.83536 * 359.95059 * 26 11 10 28 28 C 1.47319 * 110.99757 * 274.83042 * 6 5 2 29 29 H 1.08997 * 109.46868 * 44.28186 * 1 2 3 30 30 H 1.08998 * 109.46736 * 164.28484 * 1 2 3 31 31 H 1.08998 * 109.46865 * 284.28252 * 1 2 3 32 32 H 1.09001 * 109.46770 * 59.99934 * 3 2 1 33 33 H 1.09000 * 109.47669 * 179.97438 * 3 2 1 34 34 H 1.09001 * 109.47004 * 300.00458 * 3 2 1 35 35 H 1.09000 * 109.46857 * 59.99863 * 4 2 1 36 36 H 1.09000 * 109.47221 * 180.02562 * 4 2 1 37 37 H 1.09001 * 109.46901 * 300.00227 * 4 2 1 38 38 H 1.09001 * 109.47352 * 186.09511 * 5 2 1 39 39 H 1.09000 * 109.47132 * 306.09636 * 5 2 1 40 40 H 1.09004 * 109.43621 * 173.02582 * 7 6 5 41 41 H 1.08997 * 109.43795 * 292.89008 * 7 6 5 42 42 H 1.08991 * 109.71529 * 169.56017 * 8 7 6 43 43 H 1.08997 * 109.70995 * 290.15371 * 8 7 6 44 44 H 1.07997 * 126.62669 * 0.25182 * 10 9 8 45 45 H 1.09000 * 113.47118 * 321.92743 * 15 14 12 46 46 H 1.08996 * 113.46906 * 92.37944 * 15 14 12 47 47 H 1.09005 * 114.19585 * 87.72902 * 16 15 14 48 48 H 0.96996 * 119.99948 * 179.97438 * 20 19 17 49 49 H 1.09008 * 113.46515 * 267.62542 * 25 14 12 50 50 H 1.08998 * 113.46803 * 38.05973 * 25 14 12 51 51 H 1.09004 * 109.74359 * 45.86224 * 28 6 5 52 52 H 1.08997 * 109.74542 * 166.57637 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 2.0400 -0.7212 -1.2492 6 7 1.6741 0.0510 -2.4442 7 6 2.6510 -0.1534 -3.5229 8 6 2.8324 -1.6550 -3.7780 9 7 1.5044 -2.2589 -3.9254 10 6 1.1844 -3.4577 -4.4468 11 6 -0.1754 -3.5702 -4.3698 12 6 -0.9806 -4.7175 -4.8235 13 8 -0.4355 -5.6840 -5.3213 14 7 -2.3212 -4.6963 -4.6860 15 6 -3.3158 -3.7554 -4.1490 16 6 -4.2176 -4.9584 -3.8523 17 6 -5.6764 -4.7297 -4.1527 18 1 -6.0818 -5.0169 -5.1117 19 6 -6.4938 -4.1537 -3.2034 20 7 -6.0001 -3.8035 -2.0358 21 14 -8.3020 -3.8695 -3.5761 22 1 -8.6054 -4.3472 -4.9491 23 1 -9.1325 -4.6168 -2.5977 24 1 -8.6059 -2.4193 -3.4777 25 6 -3.4324 -5.6068 -5.0005 26 7 -0.6504 -2.4313 -3.7991 27 6 0.3479 -1.6494 -3.5318 28 6 0.3103 -0.2819 -2.8907 29 1 -0.3633 0.7357 -0.7175 30 1 -0.3633 -0.9893 -0.2783 31 1 -0.3633 0.2535 0.9959 32 1 1.6767 1.9563 0.8900 33 1 3.1301 1.4426 0.0005 34 1 1.6767 1.9564 -0.8900 35 1 1.6767 -1.7489 1.2491 36 1 3.1301 -0.7209 1.2494 37 1 1.6767 -0.2075 2.1392 38 1 3.1246 -0.8166 -1.1964 39 1 1.5904 -1.7125 -1.3056 40 1 2.2928 0.3283 -4.4327 41 1 3.6069 0.2835 -3.2342 42 1 3.4083 -1.8059 -4.6910 43 1 3.3528 -2.1107 -2.9357 44 1 1.8698 -4.1895 -4.8480 45 1 -2.9806 -3.2344 -3.2521 46 1 -3.7254 -3.0809 -4.9008 47 1 -4.0450 -5.4167 -2.8784 48 1 -6.5751 -3.3980 -1.3681 49 1 -3.8734 -5.4306 -5.9817 50 1 -3.1961 -6.6565 -4.8263 51 1 -0.3645 -0.2950 -2.0347 52 1 -0.0298 0.4561 -3.6171 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278111516.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:02:04 Heat of formation + Delta-G solvation = 52.772370 kcal Electronic energy + Delta-G solvation = -31522.093071 eV Core-core repulsion = 27523.253334 eV Total energy + Delta-G solvation = -3998.839736 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -43.61792 -40.99873 -39.94468 -38.64027 -37.00329 -34.76733 -34.58424 -31.86404 -30.69052 -30.35818 -28.53807 -27.98331 -27.72906 -27.19163 -26.67067 -25.52161 -23.80677 -23.36142 -21.81465 -20.58389 -19.88550 -19.42221 -18.77822 -18.30257 -17.52705 -17.18804 -16.86002 -16.69827 -16.51908 -16.17289 -16.03662 -15.74244 -15.08265 -14.99201 -14.80237 -14.71840 -14.39892 -14.27285 -14.14911 -13.90735 -13.58800 -13.41461 -13.25309 -13.15802 -13.08771 -12.78114 -12.76406 -12.59810 -12.40894 -12.38711 -12.18807 -12.13978 -11.63891 -11.55035 -11.48286 -11.38495 -11.30263 -11.02943 -10.82109 -10.77838 -10.50852 -9.76595 -9.61967 -9.38363 -8.14576 -6.26822 0.48111 1.30359 1.46950 1.48024 1.49702 1.60960 2.07755 2.44251 2.49597 2.73703 3.07238 3.14984 3.42160 3.64563 3.71402 3.83525 3.88221 3.96727 4.11898 4.17634 4.23438 4.32419 4.37271 4.40860 4.43095 4.53900 4.61220 4.64922 4.66156 4.67264 4.72297 4.78819 4.86810 4.87711 4.90935 4.92897 4.96588 5.04687 5.13168 5.14052 5.18645 5.26976 5.39457 5.40005 5.48678 5.57777 5.63392 5.77329 5.81674 5.89215 6.01787 6.23916 6.75679 6.81466 6.84921 7.21968 7.42901 8.96058 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.010673 B = 0.003078 C = 0.002554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2622.909615 B = 9093.948456 C =10960.463902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.060 4.060 3 C -0.122 4.122 4 C -0.141 4.141 5 C 0.061 3.939 6 N -0.511 5.511 7 C 0.042 3.958 8 C 0.057 3.943 9 N -0.448 5.448 10 C 0.055 3.945 11 C -0.098 4.098 12 C 0.611 3.389 13 O -0.597 6.597 14 N -0.634 5.634 15 C 0.137 3.863 16 C 0.023 3.977 17 C -0.528 4.528 18 H 0.068 0.932 19 C 0.019 3.981 20 N -0.919 5.919 21 Si 0.964 3.036 22 H -0.263 1.263 23 H -0.281 1.281 24 H -0.279 1.279 25 C 0.108 3.892 26 N -0.479 5.479 27 C 0.174 3.826 28 C 0.127 3.873 29 H 0.068 0.932 30 H 0.029 0.971 31 H 0.055 0.945 32 H 0.046 0.954 33 H 0.060 0.940 34 H 0.067 0.933 35 H 0.038 0.962 36 H 0.069 0.931 37 H 0.060 0.940 38 H 0.097 0.903 39 H 0.017 0.983 40 H 0.093 0.907 41 H 0.139 0.861 42 H 0.124 0.876 43 H 0.103 0.897 44 H 0.208 0.792 45 H 0.052 0.948 46 H 0.066 0.934 47 H 0.034 0.966 48 H 0.264 0.736 49 H 0.086 0.914 50 H 0.061 0.939 51 H 0.113 0.887 52 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.414 14.119 2.494 27.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.060 4.060 3 C -0.179 4.179 4 C -0.199 4.199 5 C -0.067 4.067 6 N -0.231 5.231 7 C -0.086 4.086 8 C -0.064 4.064 9 N -0.129 5.129 10 C -0.086 4.086 11 C -0.226 4.226 12 C 0.402 3.598 13 O -0.481 6.481 14 N -0.365 5.365 15 C 0.015 3.985 16 C 0.004 3.996 17 C -0.566 4.566 18 H 0.087 0.913 19 C -0.181 4.181 20 N -0.557 5.557 21 Si 0.789 3.211 22 H -0.186 1.186 23 H -0.207 1.207 24 H -0.205 1.205 25 C -0.014 4.014 26 N -0.199 5.199 27 C -0.093 4.093 28 C -0.003 4.003 29 H 0.086 0.914 30 H 0.048 0.952 31 H 0.075 0.925 32 H 0.065 0.935 33 H 0.079 0.921 34 H 0.086 0.914 35 H 0.057 0.943 36 H 0.088 0.912 37 H 0.079 0.921 38 H 0.115 0.885 39 H 0.035 0.965 40 H 0.111 0.889 41 H 0.157 0.843 42 H 0.142 0.858 43 H 0.121 0.879 44 H 0.225 0.775 45 H 0.071 0.929 46 H 0.084 0.916 47 H 0.052 0.948 48 H 0.073 0.927 49 H 0.104 0.896 50 H 0.079 0.921 51 H 0.131 0.869 52 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 23.198 14.433 2.676 27.452 hybrid contribution -0.556 -1.485 -0.415 1.639 sum 22.642 12.948 2.261 26.181 Atomic orbital electron populations 1.22105 0.95959 1.00522 1.01965 1.20506 0.94608 0.97181 0.93724 1.21662 1.00825 0.93624 1.01821 1.21868 1.01593 0.99455 0.96992 1.22331 1.01277 0.93503 0.89561 1.62436 1.00621 1.54811 1.05280 1.22856 0.99188 0.91044 0.95561 1.23265 0.80099 0.96921 1.06148 1.45539 1.09888 1.13410 1.44101 1.22539 0.95692 0.89813 1.00584 1.20501 0.92554 0.96126 1.13379 1.16929 0.80068 0.85245 0.77515 1.90666 1.71762 1.36179 1.49509 1.49743 1.03588 1.23796 1.59389 1.23044 0.84410 0.94739 0.96353 1.20199 0.93754 0.92556 0.93135 1.21219 0.93229 1.41059 1.01062 0.91336 1.25839 1.03128 0.94679 0.94499 1.70108 1.37487 1.41767 1.06350 0.85422 0.79360 0.77767 0.78595 1.18648 1.20687 1.20507 1.23263 0.83404 0.94222 1.00526 1.70375 1.31410 1.02442 1.15640 1.25099 0.80651 0.99937 1.03564 1.21579 0.93253 0.84973 1.00460 0.91350 0.95163 0.92549 0.93490 0.92106 0.91433 0.94288 0.91239 0.92061 0.88462 0.96487 0.88904 0.84299 0.85786 0.87910 0.77511 0.92919 0.91574 0.94780 0.92685 0.89584 0.92079 0.86884 0.86892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.88 6.98 71.98 0.50 -2.37 16 2 C -0.06 -0.87 0.85 -52.18 -0.04 -0.91 16 3 C -0.12 -1.41 8.19 71.98 0.59 -0.82 16 4 C -0.14 -1.97 8.41 71.98 0.61 -1.37 16 5 C 0.06 0.86 2.89 86.30 0.25 1.11 16 6 N -0.51 -6.73 3.79 -897.97 -3.41 -10.14 16 7 C 0.04 0.32 5.79 86.42 0.50 0.82 16 8 C 0.06 0.59 6.43 86.48 0.56 1.15 16 9 N -0.45 -10.09 3.00 -512.54 -1.54 -11.62 16 10 C 0.06 1.61 11.36 83.90 0.95 2.57 16 11 C -0.10 -3.87 6.95 40.52 0.28 -3.59 16 12 C 0.61 28.53 8.06 86.63 0.70 29.23 16 13 O -0.60 -29.48 17.66 -4.09 -0.07 -29.55 16 14 N -0.63 -30.60 3.69 -862.88 -3.19 -33.79 16 15 C 0.14 6.88 7.32 83.10 0.61 7.49 16 16 C 0.02 1.21 3.77 -11.30 -0.04 1.17 16 17 C -0.53 -28.74 8.83 25.60 0.23 -28.51 16 18 H 0.07 3.58 7.81 -2.91 -0.02 3.56 16 19 C 0.02 1.02 5.46 84.66 0.46 1.48 16 20 N -0.92 -53.46 13.26 21.45 0.28 -53.18 16 21 Si 0.96 42.79 29.54 68.60 2.03 44.82 16 22 H -0.26 -11.17 7.11 99.48 0.71 -10.47 16 23 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 24 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 25 C 0.11 5.05 8.19 83.18 0.68 5.74 16 26 N -0.48 -18.50 9.78 -175.95 -1.72 -20.22 16 27 C 0.17 4.90 6.80 138.03 0.94 5.84 16 28 C 0.13 2.61 5.71 85.60 0.49 3.10 16 29 H 0.07 1.28 6.49 -2.39 -0.02 1.26 16 30 H 0.03 0.74 7.36 -2.39 -0.02 0.72 16 31 H 0.06 1.05 8.04 -2.39 -0.02 1.04 16 32 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 33 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 34 H 0.07 0.85 7.45 -2.39 -0.02 0.83 16 35 H 0.04 0.66 8.14 -2.39 -0.02 0.64 16 36 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 37 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 38 H 0.10 0.90 7.37 -2.39 -0.02 0.88 16 39 H 0.02 0.35 6.87 -2.39 -0.02 0.33 16 40 H 0.09 0.76 8.07 -2.38 -0.02 0.74 16 41 H 0.14 0.22 8.14 -2.39 -0.02 0.20 16 42 H 0.12 0.71 8.14 -2.39 -0.02 0.69 16 43 H 0.10 0.83 7.19 -2.39 -0.02 0.82 16 44 H 0.21 4.93 8.06 -2.91 -0.02 4.91 16 45 H 0.05 2.79 7.46 -2.39 -0.02 2.78 16 46 H 0.07 3.29 8.10 -2.39 -0.02 3.27 16 47 H 0.03 1.99 8.11 -2.38 -0.02 1.97 16 48 H 0.26 14.49 8.31 -92.71 -0.77 13.72 16 49 H 0.09 3.78 8.10 -2.38 -0.02 3.76 16 50 H 0.06 2.76 8.14 -2.39 -0.02 2.75 16 51 H 0.11 2.64 3.98 -2.39 -0.01 2.63 16 52 H 0.11 2.10 8.14 -2.39 -0.02 2.08 16 Total: -1.00 -74.44 406.08 1.54 -72.89 By element: Atomic # 1 Polarization: 17.78 SS G_CDS: 0.90 Total: 18.68 kcal Atomic # 6 Polarization: 13.86 SS G_CDS: 8.25 Total: 22.11 kcal Atomic # 7 Polarization: -119.38 SS G_CDS: -9.57 Total: -128.95 kcal Atomic # 8 Polarization: -29.48 SS G_CDS: -0.07 Total: -29.55 kcal Atomic # 14 Polarization: 42.79 SS G_CDS: 2.03 Total: 44.82 kcal Total: -74.44 1.54 -72.89 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278111516.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.664 kcal (2) G-P(sol) polarization free energy of solvation -74.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.892 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds