Wall clock time and date at job start Wed Apr 1 2020 03:58:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47189 * 2 1 4 4 C 1.53007 * 109.46649 * 240.00618 * 2 1 3 5 5 C 1.52993 * 109.47671 * 120.00783 * 2 1 3 6 6 N 1.46902 * 109.47356 * 65.30840 * 5 2 1 7 7 C 1.46938 * 110.99979 * 149.24833 * 6 5 2 8 8 C 1.53629 * 109.64609 * 53.06911 * 7 6 5 9 9 C 1.50424 * 107.80003 * 48.48474 * 8 7 6 10 10 C 1.35819 * 123.65550 * 345.09563 * 9 8 7 11 11 N 1.34110 * 107.17323 * 179.31549 * 10 9 8 12 12 H 0.96998 * 124.97822 * 179.91547 * 11 10 9 13 13 N 1.28922 * 110.03597 * 359.88990 * 11 10 9 14 14 C 1.32289 * 110.16950 * 359.91416 * 13 11 10 15 15 C 1.47711 * 126.69855 * 179.97438 * 14 13 11 16 16 O 1.21570 * 119.99682 * 180.02562 * 15 14 13 17 17 N 1.34770 * 119.99875 * 0.03148 * 15 14 13 18 18 C 1.47073 * 136.05765 * 359.63051 * 17 15 14 19 19 C 1.53244 * 88.08084 * 207.20110 * 18 17 15 20 20 C 1.50702 * 114.32469 * 220.47004 * 19 18 17 21 21 H 1.07992 * 119.99930 * 93.75967 * 20 19 18 22 22 C 1.37876 * 119.99348 * 273.75696 * 20 19 18 23 23 N 1.31516 * 120.00905 * 0.02562 * 22 20 19 24 24 Si 1.86806 * 119.99411 * 179.97438 * 22 20 19 25 25 H 1.48496 * 109.47063 * 60.00398 * 24 22 20 26 26 H 1.48502 * 109.46747 * 179.97438 * 24 22 20 27 27 H 1.48495 * 109.47432 * 300.00091 * 24 22 20 28 28 C 1.47071 * 136.05868 * 179.97438 * 17 15 14 29 29 C 1.47333 * 110.99918 * 274.01545 * 6 5 2 30 30 H 1.09004 * 109.46610 * 290.33278 * 1 2 3 31 31 H 1.08999 * 109.47193 * 50.33552 * 1 2 3 32 32 H 1.09005 * 109.47083 * 170.33908 * 1 2 3 33 33 H 1.08999 * 109.47559 * 180.02562 * 3 2 1 34 34 H 1.08997 * 109.47615 * 300.00896 * 3 2 1 35 35 H 1.09005 * 109.46929 * 60.00566 * 3 2 1 36 36 H 1.08994 * 109.47378 * 299.99286 * 4 2 1 37 37 H 1.08998 * 109.47268 * 60.00260 * 4 2 1 38 38 H 1.09004 * 109.46393 * 179.97438 * 4 2 1 39 39 H 1.09011 * 109.46926 * 305.30844 * 5 2 1 40 40 H 1.09001 * 109.47574 * 185.31455 * 5 2 1 41 41 H 1.09002 * 109.44405 * 173.12498 * 7 6 5 42 42 H 1.09000 * 109.43881 * 293.01703 * 7 6 5 43 43 H 1.08996 * 109.80511 * 168.28118 * 8 7 6 44 44 H 1.09001 * 109.80320 * 289.10567 * 8 7 6 45 45 H 1.09001 * 113.46382 * 321.92879 * 18 17 15 46 46 H 1.08997 * 113.46733 * 92.37598 * 18 17 15 47 47 H 1.09001 * 114.01620 * 87.71616 * 19 18 17 48 48 H 0.96994 * 120.00159 * 179.97438 * 23 22 20 49 49 H 1.08991 * 113.47197 * 267.63105 * 28 17 15 50 50 H 1.09003 * 113.46235 * 38.06636 * 28 17 15 51 51 H 1.09000 * 109.71273 * 167.31780 * 29 6 5 52 52 H 1.09001 * 109.71174 * 46.67870 * 29 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2494 5 6 2.0401 -0.7214 1.2490 6 7 1.6580 -2.1384 1.1866 7 6 2.6472 -2.9813 1.8722 8 6 2.8739 -2.4558 3.2979 9 6 1.5253 -2.2374 3.9275 10 6 0.3641 -2.1967 3.2242 11 7 -0.6267 -2.0020 4.1068 12 1 -1.5672 -1.9308 3.8803 13 7 -0.1459 -1.9238 5.3005 14 6 1.1694 -2.0625 5.2724 15 6 2.0851 -2.0324 6.4310 16 8 3.2811 -2.1731 6.2643 17 7 1.5947 -1.8490 7.6729 18 6 0.2651 -1.6423 8.2666 19 6 0.9503 -0.8889 9.4116 20 6 0.3819 -1.1829 10.7760 21 1 0.8240 -1.9530 11.3906 22 6 -0.7025 -0.4686 11.2395 23 7 -1.2412 0.4689 10.4908 24 14 -1.4076 -0.8336 12.9304 25 1 -0.3628 -0.6088 13.9614 26 1 -2.5605 0.0655 13.1905 27 1 -1.8597 -2.2471 12.9837 28 6 2.1543 -1.7616 9.0302 29 6 0.3024 -2.3440 1.7259 30 1 -0.3633 0.3571 0.9637 31 1 -0.3633 0.6559 -0.7911 32 1 -0.3633 -1.0131 -0.1725 33 1 3.1300 1.4425 -0.0005 34 1 1.6766 1.9564 -0.8899 35 1 1.6767 1.9563 0.8901 36 1 1.6767 -1.7488 -1.2495 37 1 1.6766 -0.2072 -2.1393 38 1 3.1300 -0.7207 -1.2496 39 1 1.6012 -0.2654 2.1366 40 1 3.1260 -0.6397 1.2979 41 1 2.2808 -4.0069 1.9175 42 1 3.5881 -2.9566 1.3225 43 1 3.4403 -3.1866 3.8752 44 1 3.4182 -1.5121 3.2615 45 1 -0.3866 -1.0111 7.6624 46 1 -0.2175 -2.5670 8.5829 47 1 1.0910 0.1751 9.2211 48 1 -2.0043 0.9711 10.8168 49 1 2.1796 -2.7182 9.5518 50 1 3.1058 -1.2317 9.0740 51 1 -0.0479 -3.3436 1.4688 52 1 -0.3754 -1.5981 1.3107 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001278113621.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:58:53 Heat of formation + Delta-G solvation = 78.294292 kcal Electronic energy + Delta-G solvation = -31413.326947 eV Core-core repulsion = 27415.593924 eV Total energy + Delta-G solvation = -3997.733023 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.83043 -39.45924 -39.15363 -36.96913 -36.30155 -32.74059 -32.61137 -30.96522 -30.27862 -28.89896 -27.67188 -27.37638 -26.85603 -25.45767 -24.86604 -24.09814 -23.10992 -22.39920 -20.11430 -19.63547 -18.61905 -18.12310 -17.75361 -16.81531 -16.15190 -15.93994 -15.74513 -15.52821 -15.08793 -14.87212 -14.62201 -14.29489 -14.20675 -13.87749 -13.61894 -13.53965 -13.18387 -13.08627 -12.80195 -12.40897 -12.35471 -12.28240 -12.13057 -12.06583 -11.73657 -11.45981 -11.44752 -11.24481 -11.11394 -10.93616 -10.91005 -10.83885 -10.80699 -10.64699 -10.57805 -10.28381 -9.72741 -9.21500 -9.15833 -9.02101 -8.64514 -8.58582 -8.53871 -7.79331 -6.14284 -4.19799 1.82235 2.13701 2.86533 3.27229 3.32261 3.34388 3.58113 3.65773 3.88259 4.35715 4.47817 4.52616 4.61945 4.68429 4.77261 4.83148 4.87929 5.04968 5.15285 5.19654 5.28922 5.33372 5.34411 5.40685 5.46970 5.51140 5.57758 5.60909 5.72748 5.73804 5.77173 5.79705 5.89458 5.97110 6.02130 6.10863 6.12277 6.16935 6.24545 6.26159 6.30825 6.45938 6.50949 6.70580 6.74964 6.80371 6.82679 6.96841 7.08492 7.59548 7.83479 7.96992 8.22735 8.51543 8.82341 8.83766 9.46322 10.95453 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.018804 B = 0.002407 C = 0.002306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1488.692569 B =11628.584346 C =12140.166039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.063 4.063 3 C -0.143 4.143 4 C -0.129 4.129 5 C 0.059 3.941 6 N -0.516 5.516 7 C 0.053 3.947 8 C -0.073 4.073 9 C -0.151 4.151 10 C -0.033 4.033 11 N -0.372 5.372 12 H 0.443 0.557 13 N -0.246 5.246 14 C 0.013 3.987 15 C 0.615 3.385 16 O -0.557 6.557 17 N -0.629 5.629 18 C 0.109 3.891 19 C 0.032 3.968 20 C -0.516 4.516 21 H 0.063 0.937 22 C 0.068 3.932 23 N -0.885 5.885 24 Si 0.896 3.104 25 H -0.275 1.275 26 H -0.287 1.287 27 H -0.275 1.275 28 C 0.102 3.898 29 C 0.111 3.889 30 H 0.050 0.950 31 H 0.052 0.948 32 H 0.066 0.934 33 H 0.055 0.945 34 H 0.055 0.945 35 H 0.053 0.947 36 H 0.069 0.931 37 H 0.043 0.957 38 H 0.048 0.952 39 H 0.048 0.952 40 H 0.073 0.927 41 H 0.077 0.923 42 H 0.084 0.916 43 H 0.088 0.912 44 H 0.075 0.925 45 H 0.067 0.933 46 H 0.071 0.929 47 H 0.067 0.933 48 H 0.264 0.736 49 H 0.075 0.925 50 H 0.058 0.942 51 H 0.092 0.908 52 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.628 -3.342 -23.810 24.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.063 4.063 3 C -0.201 4.201 4 C -0.187 4.187 5 C -0.069 4.069 6 N -0.237 5.237 7 C -0.075 4.075 8 C -0.113 4.113 9 C -0.162 4.162 10 C -0.163 4.163 11 N -0.085 5.085 12 H 0.287 0.713 13 N -0.082 5.082 14 C -0.147 4.147 15 C 0.402 3.598 16 O -0.436 6.436 17 N -0.361 5.361 18 C -0.013 4.013 19 C 0.013 3.987 20 C -0.554 4.554 21 H 0.081 0.919 22 C -0.135 4.135 23 N -0.522 5.522 24 Si 0.723 3.277 25 H -0.200 1.200 26 H -0.213 1.213 27 H -0.201 1.201 28 C -0.020 4.020 29 C -0.019 4.019 30 H 0.069 0.931 31 H 0.071 0.929 32 H 0.085 0.915 33 H 0.074 0.926 34 H 0.075 0.925 35 H 0.072 0.928 36 H 0.088 0.912 37 H 0.062 0.938 38 H 0.067 0.933 39 H 0.067 0.933 40 H 0.092 0.908 41 H 0.095 0.905 42 H 0.102 0.898 43 H 0.106 0.894 44 H 0.093 0.907 45 H 0.085 0.915 46 H 0.089 0.911 47 H 0.085 0.915 48 H 0.074 0.926 49 H 0.093 0.907 50 H 0.077 0.923 51 H 0.110 0.890 52 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 1.342 -3.284 -23.851 24.113 hybrid contribution -0.548 -0.002 1.256 1.371 sum 0.794 -3.286 -22.594 22.846 Atomic orbital electron populations 1.22107 0.95202 1.01853 1.01243 1.20528 0.95436 0.94688 0.95686 1.21872 1.01070 0.95449 1.01718 1.21723 1.00422 1.01065 0.95458 1.22269 1.00581 0.87410 0.96673 1.62369 1.01165 1.07080 1.53072 1.22399 0.95913 0.97030 0.92123 1.20618 0.92571 1.02585 0.95494 1.19780 0.95801 1.09125 0.91487 1.22130 0.89024 1.09055 0.96062 1.43019 1.09906 1.52037 1.03510 0.71333 1.74188 1.11472 1.19059 1.03461 1.21625 0.90158 1.08544 0.94353 1.16393 0.85922 0.77132 0.80359 1.90708 1.14783 1.53194 1.84894 1.49837 1.14175 1.67611 1.04479 1.23522 0.84560 0.99600 0.93615 1.20329 0.89494 0.95234 0.93622 1.20856 1.14408 1.19954 1.00220 0.91870 1.25027 0.96617 0.94458 0.97423 1.69952 1.23022 1.22169 1.37065 0.86602 0.78597 0.78290 0.84207 1.20039 1.21262 1.20090 1.23392 0.99746 1.00411 0.78445 1.21351 0.93083 1.03604 0.83833 0.93093 0.92871 0.91489 0.92613 0.92546 0.92783 0.91188 0.93756 0.93296 0.93343 0.90831 0.90466 0.89784 0.89369 0.90665 0.91468 0.91116 0.91487 0.92646 0.90710 0.92308 0.88953 0.87761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 6.92 37.16 0.26 -0.79 16 2 C -0.06 -0.48 0.85 -154.51 -0.13 -0.61 16 3 C -0.14 -1.09 8.46 37.16 0.31 -0.78 16 4 C -0.13 -0.92 8.24 37.16 0.31 -0.62 16 5 C 0.06 0.54 2.93 -3.83 -0.01 0.53 16 6 N -0.52 -4.48 3.78 -235.26 -0.89 -5.37 16 7 C 0.05 0.50 5.77 -3.48 -0.02 0.48 16 8 C -0.07 -0.95 5.09 -27.69 -0.14 -1.09 16 9 C -0.15 -2.30 5.50 -104.88 -0.58 -2.87 16 10 C -0.03 -0.40 6.42 -82.47 -0.53 -0.93 16 11 N -0.37 -4.71 6.82 33.42 0.23 -4.48 16 12 H 0.44 3.87 8.96 -190.17 -1.70 2.16 16 13 N -0.25 -4.29 10.83 33.24 0.36 -3.93 16 14 C 0.01 0.25 7.09 -83.06 -0.59 -0.34 16 15 C 0.61 13.38 8.08 -12.39 -0.10 13.28 16 16 O -0.56 -12.89 16.73 5.30 0.09 -12.80 16 17 N -0.63 -13.96 3.69 -186.53 -0.69 -14.65 16 18 C 0.11 2.50 7.35 -8.63 -0.06 2.44 16 19 C 0.03 0.79 3.77 -91.38 -0.34 0.45 16 20 C -0.52 -13.47 8.82 -34.44 -0.30 -13.77 16 21 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 22 C 0.07 1.81 5.46 -17.82 -0.10 1.72 16 23 N -0.89 -24.67 13.26 55.43 0.74 -23.93 16 24 Si 0.90 20.40 29.54 -169.99 -5.02 15.38 16 25 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 26 H -0.29 -6.53 7.11 56.52 0.40 -6.12 16 27 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 28 C 0.10 2.23 8.19 -8.49 -0.07 2.16 16 29 C 0.11 0.94 5.61 -4.75 -0.03 0.91 16 30 H 0.05 0.40 7.74 -51.93 -0.40 -0.01 16 31 H 0.05 0.35 8.12 -51.93 -0.42 -0.07 16 32 H 0.07 0.44 6.13 -51.93 -0.32 0.12 16 33 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 34 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.07 0.53 7.46 -51.93 -0.39 0.14 16 37 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 38 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 39 H 0.05 0.56 6.72 -51.92 -0.35 0.21 16 40 H 0.07 0.69 7.30 -51.93 -0.38 0.31 16 41 H 0.08 0.71 8.08 -51.93 -0.42 0.29 16 42 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.09 1.27 7.80 -51.93 -0.41 0.87 16 44 H 0.07 1.02 7.22 -51.93 -0.37 0.64 16 45 H 0.07 1.59 7.52 -51.93 -0.39 1.20 16 46 H 0.07 1.61 8.10 -51.93 -0.42 1.19 16 47 H 0.07 1.79 8.11 -51.93 -0.42 1.37 16 48 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 49 H 0.07 1.56 8.10 -51.93 -0.42 1.14 16 50 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 51 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 52 H 0.10 0.73 4.11 -51.93 -0.21 0.52 16 LS Contribution 403.22 15.07 6.08 6.08 Total: -1.00 -31.02 403.22 -11.19 -42.21 By element: Atomic # 1 Polarization: 11.30 SS G_CDS: -9.95 Total: 1.34 kcal Atomic # 6 Polarization: 2.27 SS G_CDS: -2.13 Total: 0.15 kcal Atomic # 7 Polarization: -52.11 SS G_CDS: -0.25 Total: -52.36 kcal Atomic # 8 Polarization: -12.89 SS G_CDS: 0.09 Total: -12.80 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.38 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -31.02 -11.19 -42.21 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278113621.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.508 kcal (2) G-P(sol) polarization free energy of solvation -31.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.214 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds