Wall clock time and date at job start Wed Apr 1 2020 04:39:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52994 * 109.47071 * 2 1 4 4 C 1.53002 * 109.46850 * 119.99744 * 2 1 3 5 5 N 1.46898 * 109.46985 * 175.00051 * 4 2 1 6 6 C 1.47503 * 111.00038 * 290.58642 * 5 4 2 7 7 C 1.51864 * 107.00801 * 154.50925 * 6 5 4 8 8 C 1.34699 * 127.45672 * 244.85628 * 7 6 5 9 9 C 1.40182 * 107.59422 * 180.02562 * 8 7 6 10 10 N 1.31187 * 108.23761 * 359.97438 * 9 8 7 11 11 N 1.34440 * 124.47581 * 64.84883 * 7 6 5 12 12 C 1.47694 * 124.31454 * 359.95758 * 11 7 6 13 13 C 1.53685 * 106.96364 * 295.53823 * 12 11 7 14 14 C 1.44792 * 110.99860 * 164.33538 * 5 4 2 15 15 H 1.09002 * 108.02693 * 77.10167 * 14 5 4 16 16 C 1.50698 * 108.02385 * 320.65420 * 14 5 4 17 17 O 1.21274 * 120.00228 * 317.84324 * 16 14 5 18 18 N 1.34781 * 119.99808 * 137.84518 * 16 14 5 19 19 C 1.47586 * 134.49097 * 179.97438 * 18 16 14 20 20 C 1.53944 * 86.11332 * 155.35921 * 19 18 16 21 21 C 1.50707 * 113.73839 * 137.95736 * 20 19 18 22 22 H 1.07997 * 119.99901 * 1.91949 * 21 20 19 23 23 C 1.37876 * 119.99757 * 181.92812 * 21 20 19 24 24 N 1.31511 * 120.00048 * 359.97438 * 23 21 20 25 25 Si 1.86799 * 119.99600 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.47002 * 269.99321 * 25 23 21 27 27 H 1.48496 * 109.47352 * 29.99758 * 25 23 21 28 28 H 1.48505 * 109.46981 * 149.99707 * 25 23 21 29 29 C 1.47813 * 134.45988 * 359.86757 * 18 16 14 30 30 H 1.08988 * 109.47403 * 300.00209 * 1 2 3 31 31 H 1.09009 * 109.46499 * 60.00346 * 1 2 3 32 32 H 1.08998 * 109.47013 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.47042 * 239.99620 * 2 1 3 34 34 H 1.09002 * 109.46865 * 179.97438 * 3 2 1 35 35 H 1.08999 * 109.47153 * 299.99791 * 3 2 1 36 36 H 1.09000 * 109.47498 * 59.99899 * 3 2 1 37 37 H 1.09012 * 109.46699 * 55.00085 * 4 2 1 38 38 H 1.08993 * 109.47212 * 295.00365 * 4 2 1 39 39 H 1.09000 * 109.94617 * 273.88206 * 6 5 4 40 40 H 1.09001 * 109.94262 * 35.13483 * 6 5 4 41 41 H 1.08004 * 126.20368 * 359.97438 * 8 7 6 42 42 H 1.08001 * 125.88050 * 179.97438 * 9 8 7 43 43 H 1.09001 * 109.95195 * 54.91124 * 12 11 7 44 44 H 1.09008 * 109.95183 * 176.09311 * 12 11 7 45 45 H 1.08996 * 109.19311 * 319.15969 * 13 12 11 46 46 H 1.08997 * 109.19486 * 199.88145 * 13 12 11 47 47 H 1.09003 * 113.76407 * 41.06050 * 19 18 16 48 48 H 1.08994 * 113.87109 * 269.67809 * 19 18 16 49 49 H 1.08998 * 113.74336 * 269.15084 * 20 19 18 50 50 H 0.96993 * 120.00399 * 0.02562 * 24 23 21 51 51 H 1.09002 * 113.77054 * 90.37549 * 29 18 16 52 52 H 1.09003 * 113.83248 * 318.91923 * 29 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.5040 -0.8266 1.1905 6 6 3.9243 -1.7657 0.1335 7 6 5.3243 -1.3584 -0.2915 8 6 5.7119 -0.8906 -1.4936 9 6 7.0911 -0.6481 -1.4294 10 7 7.5075 -0.9623 -0.2257 11 7 6.4067 -1.4115 0.5041 12 6 6.3873 -1.8733 1.9068 13 6 5.5209 -0.8780 2.6946 14 6 4.0526 -1.1614 2.4880 15 1 3.8875 -2.2250 2.6598 16 6 3.2790 -0.3985 3.5323 17 8 2.9825 0.7616 3.3402 18 7 2.9167 -1.0055 4.6798 19 6 2.1784 -0.5821 5.8855 20 6 1.8411 -2.0721 6.0746 21 6 1.9440 -2.5410 7.5031 22 1 2.2027 -1.8411 8.2838 23 6 1.7081 -3.8636 7.8133 24 7 1.3928 -4.7158 6.8626 25 14 1.8364 -4.4448 9.5839 26 1 3.2271 -4.8861 9.8604 27 1 1.4798 -3.3302 10.4979 28 1 0.9044 -5.5804 9.8008 29 6 3.0980 -2.3636 5.2346 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8934 -0.5139 -0.8900 34 1 3.1300 1.4424 0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6767 1.9563 0.8900 37 1 1.6053 -1.7198 1.2952 38 1 1.7516 -0.1583 2.1369 39 1 3.9354 -2.7836 0.5233 40 1 3.2438 -1.6989 -0.7153 41 1 5.0756 -0.7319 -2.3518 42 1 7.7051 -0.2682 -2.2326 43 1 5.9528 -2.8714 1.9638 44 1 7.4006 -1.8856 2.3085 45 1 5.7414 0.1345 2.3569 46 1 5.7558 -0.9602 3.7558 47 1 1.3101 0.0414 5.6725 48 1 2.8139 -0.1724 6.6706 49 1 0.9113 -2.3760 5.5936 50 1 1.3265 -4.4140 5.9431 51 1 4.0056 -2.4785 5.8273 52 1 2.9626 -3.1600 4.5028 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001278120111.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:39:47 Heat of formation + Delta-G solvation = 86.667384 kcal Electronic energy + Delta-G solvation = -32370.579379 eV Core-core repulsion = 28373.209441 eV Total energy + Delta-G solvation = -3997.369938 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.61892 -40.24194 -38.38974 -36.77438 -35.73353 -33.65880 -32.98573 -31.84152 -30.12737 -29.06953 -27.01968 -26.87250 -26.62236 -25.47139 -24.71905 -23.93080 -21.95490 -21.20861 -20.37222 -20.19787 -19.35521 -18.43463 -17.64369 -17.12628 -16.61153 -16.03843 -15.62089 -15.29959 -15.22075 -14.73255 -14.45334 -14.32507 -14.15256 -13.89320 -13.78745 -13.54123 -13.44744 -12.98531 -12.85883 -12.47398 -12.41085 -12.23129 -12.10988 -12.04810 -11.94561 -11.68844 -11.61920 -11.55887 -11.34674 -11.07708 -10.88391 -10.80574 -10.75698 -10.66536 -10.36481 -10.25684 -9.79998 -9.52160 -9.24102 -8.72328 -8.64085 -8.60396 -8.41619 -8.10132 -6.61105 -4.35257 1.83808 2.42056 2.75417 2.88319 3.14385 3.31313 3.34902 3.50217 3.67955 4.31803 4.36493 4.40202 4.47876 4.69691 4.78839 4.83897 4.95992 4.97902 5.01047 5.07626 5.10985 5.17351 5.23563 5.27933 5.42235 5.53744 5.61202 5.66473 5.70300 5.71566 5.74043 5.84624 5.89545 5.92686 5.99162 6.01766 6.03567 6.10802 6.12277 6.16341 6.23126 6.28771 6.37630 6.45554 6.58175 6.63105 6.81983 6.87723 6.97857 7.16020 7.72535 7.86551 8.17981 8.20393 8.48900 8.60829 9.37606 10.78065 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012388 B = 0.003221 C = 0.002807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2259.678182 B = 8690.353272 C = 9973.367784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.085 4.085 3 C -0.132 4.132 4 C 0.045 3.955 5 N -0.520 5.520 6 C 0.117 3.883 7 C 0.102 3.898 8 C -0.266 4.266 9 C 0.039 3.961 10 N -0.299 5.299 11 N -0.362 5.362 12 C 0.135 3.865 13 C -0.123 4.123 14 C 0.083 3.917 15 H 0.051 0.949 16 C 0.526 3.474 17 O -0.540 6.540 18 N -0.639 5.639 19 C 0.114 3.886 20 C 0.015 3.985 21 C -0.597 4.597 22 H 0.057 0.943 23 C 0.026 3.974 24 N -0.903 5.903 25 Si 1.071 2.929 26 H -0.286 1.286 27 H -0.287 1.287 28 H -0.283 1.283 29 C 0.094 3.906 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.051 0.949 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.041 0.959 36 H 0.053 0.947 37 H 0.032 0.968 38 H 0.103 0.897 39 H 0.057 0.943 40 H 0.107 0.893 41 H 0.144 0.856 42 H 0.179 0.821 43 H 0.090 0.910 44 H 0.107 0.893 45 H 0.090 0.910 46 H 0.095 0.905 47 H 0.062 0.938 48 H 0.077 0.923 49 H 0.053 0.947 50 H 0.269 0.731 51 H 0.081 0.919 52 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.076 4.403 -14.707 16.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.104 4.104 3 C -0.190 4.190 4 C -0.081 4.081 5 N -0.245 5.245 6 C -0.012 4.012 7 C -0.027 4.027 8 C -0.296 4.296 9 C -0.146 4.146 10 N -0.120 5.120 11 N -0.145 5.145 12 C 0.014 3.986 13 C -0.162 4.162 14 C -0.029 4.029 15 H 0.069 0.931 16 C 0.314 3.686 17 O -0.418 6.418 18 N -0.373 5.373 19 C -0.008 4.008 20 C -0.004 4.004 21 C -0.635 4.635 22 H 0.076 0.924 23 C -0.180 4.180 24 N -0.537 5.537 25 Si 0.898 3.102 26 H -0.213 1.213 27 H -0.213 1.213 28 H -0.209 1.209 29 C -0.028 4.028 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.071 0.929 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.060 0.940 36 H 0.072 0.928 37 H 0.051 0.949 38 H 0.121 0.879 39 H 0.075 0.925 40 H 0.126 0.874 41 H 0.162 0.838 42 H 0.196 0.804 43 H 0.108 0.892 44 H 0.125 0.875 45 H 0.109 0.891 46 H 0.113 0.887 47 H 0.081 0.919 48 H 0.095 0.905 49 H 0.071 0.929 50 H 0.080 0.920 51 H 0.099 0.901 52 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 6.026 4.101 -13.166 15.049 hybrid contribution -0.651 0.577 -1.359 1.613 sum 5.375 4.678 -14.525 16.178 Atomic orbital electron populations 1.21820 0.95206 1.01537 1.01951 1.21057 0.94946 0.97467 0.96880 1.21645 1.02168 0.94607 1.00533 1.22598 0.84730 0.99354 1.01417 1.60385 1.10795 1.49750 1.03571 1.21182 0.90477 0.93582 0.95947 1.20956 0.89976 1.00261 0.91467 1.21005 0.95788 1.14165 0.98606 1.23915 0.95005 1.00480 0.95216 1.77343 1.09294 1.20177 1.05199 1.48798 1.05057 1.49755 1.10897 1.22233 1.02755 0.97472 0.76149 1.21674 0.91867 1.01392 1.01303 1.20725 0.95132 0.98308 0.88705 0.93094 1.20001 0.79373 0.86896 0.82285 1.90666 1.55798 1.16686 1.78690 1.50640 1.54824 1.16093 1.15781 1.23342 0.94018 0.99917 0.83513 1.20623 0.93080 0.89968 0.96713 1.21841 1.52889 0.97181 0.91576 0.92439 1.25880 0.92879 0.93236 1.06000 1.70802 1.43533 1.37270 1.02081 0.83501 0.76964 0.75845 0.73849 1.21291 1.21282 1.20883 1.23945 1.02581 0.81455 0.94844 0.92504 0.92536 0.92939 0.91646 0.91613 0.94014 0.92764 0.94940 0.87937 0.92549 0.87449 0.83793 0.80353 0.89184 0.87493 0.89110 0.88675 0.91948 0.90480 0.92903 0.92018 0.90058 0.92364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 9.19 37.16 0.34 -1.23 16 2 C -0.08 -0.99 2.90 -90.62 -0.26 -1.25 16 3 C -0.13 -1.69 9.08 37.15 0.34 -1.35 16 4 C 0.05 0.63 3.81 -3.82 -0.01 0.61 16 5 N -0.52 -6.98 3.56 -231.15 -0.82 -7.80 16 6 C 0.12 1.31 5.44 -4.07 -0.02 1.29 16 7 C 0.10 1.27 6.25 -82.13 -0.51 0.75 16 8 C -0.27 -3.06 10.77 -40.11 -0.43 -3.49 16 9 C 0.04 0.46 12.04 -17.10 -0.21 0.25 16 10 N -0.30 -4.17 12.64 30.75 0.39 -3.78 16 11 N -0.36 -4.74 3.67 -55.81 -0.20 -4.95 16 12 C 0.13 1.50 6.81 -3.03 -0.02 1.48 16 13 C -0.12 -1.59 5.10 -27.40 -0.14 -1.73 16 14 C 0.08 1.19 1.86 -71.02 -0.13 1.06 16 15 H 0.05 0.71 6.67 -51.93 -0.35 0.36 16 16 C 0.53 9.30 5.14 -10.98 -0.06 9.25 16 17 O -0.54 -11.06 15.80 5.56 0.09 -10.97 16 18 N -0.64 -11.76 3.61 -178.22 -0.64 -12.40 16 19 C 0.11 2.23 8.39 -2.96 -0.02 2.20 16 20 C 0.02 0.34 3.07 -90.84 -0.28 0.06 16 21 C -0.60 -14.68 8.77 -34.44 -0.30 -14.98 16 22 H 0.06 1.41 7.81 -52.49 -0.41 1.00 16 23 C 0.03 0.65 5.46 -17.82 -0.10 0.56 16 24 N -0.90 -24.30 13.65 55.43 0.76 -23.55 16 25 Si 1.07 22.77 29.90 -169.99 -5.08 17.69 16 26 H -0.29 -5.89 7.11 56.52 0.40 -5.49 16 27 H -0.29 -5.86 7.11 56.52 0.40 -5.46 16 28 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 29 C 0.09 1.79 7.72 -2.83 -0.02 1.77 16 30 H 0.06 0.66 8.14 -51.94 -0.42 0.24 16 31 H 0.06 0.53 8.14 -51.92 -0.42 0.10 16 32 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.07 0.68 6.30 -51.93 -0.33 0.35 16 34 H 0.06 0.94 7.75 -51.93 -0.40 0.54 16 35 H 0.04 0.46 8.14 -51.93 -0.42 0.03 16 36 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.03 0.43 8.09 -51.92 -0.42 0.01 16 38 H 0.10 1.75 4.78 -51.93 -0.25 1.50 16 39 H 0.06 0.60 7.77 -51.93 -0.40 0.20 16 40 H 0.11 1.03 6.05 -51.93 -0.31 0.72 16 41 H 0.14 1.34 8.06 -52.48 -0.42 0.91 16 42 H 0.18 1.49 8.06 -52.49 -0.42 1.06 16 43 H 0.09 0.88 7.88 -51.93 -0.41 0.47 16 44 H 0.11 1.06 8.14 -51.92 -0.42 0.63 16 45 H 0.09 1.37 8.09 -51.93 -0.42 0.95 16 46 H 0.09 1.17 7.99 -51.93 -0.41 0.75 16 47 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 48 H 0.08 1.48 8.09 -51.93 -0.42 1.06 16 49 H 0.05 1.24 7.70 -51.93 -0.40 0.84 16 50 H 0.27 7.12 7.01 -40.82 -0.29 6.83 16 51 H 0.08 1.54 8.09 -51.93 -0.42 1.12 16 52 H 0.06 1.06 7.80 -51.93 -0.40 0.66 16 LS Contribution 406.93 15.07 6.13 6.13 Total: -1.00 -29.53 406.93 -9.88 -39.41 By element: Atomic # 1 Polarization: 13.61 SS G_CDS: -8.65 Total: 4.96 kcal Atomic # 6 Polarization: -2.91 SS G_CDS: -1.85 Total: -4.76 kcal Atomic # 7 Polarization: -51.95 SS G_CDS: -0.53 Total: -52.48 kcal Atomic # 8 Polarization: -11.06 SS G_CDS: 0.09 Total: -10.97 kcal Atomic # 14 Polarization: 22.77 SS G_CDS: -5.08 Total: 17.69 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -29.53 -9.88 -39.41 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278120111.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.081 kcal (2) G-P(sol) polarization free energy of solvation -29.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.414 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds